Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003935

Physical Location & Seq

Genomic Coordinates Reverse (-)

43477897 .. 43478184

Gene Structure 288 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG300100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAGGAACACCATCAAGGATGACAAGATTGCTTCAAAGATTGACCCATCTGACAAAAAGAAGATTGAAGATGCAATTGATCAGGCCATTCAGTGGCTCGATAATAATCAGCTAGCAGAGGCTGATGAATTCGAGGACAAGATGAAGGAGCTCGAGAGTCTTTGCAACCCTATCATTGCCAAGATGTACCAGGGTGGTGCTGCTCCTGACATGGGTGGCGGCGGGGAAGCTGATGTTCCTCCTTCTGGTGGAAGTGGTGCTGGTCCAAAGATTGAAGAAGTCGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

95

Amino Acids

10.16

Weight (kDa)

4.32

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003935)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02510 FvH4_3g13691 FvH4_3g13733 FvH4_5g38882
malus_domestica	MD07G1197000.v1.1 MD17G1225800.v1.1
pyrus_communis	pycom17g22950
rosa_chinensis	RchiOBHm_Chr4g0419761 RchiOBHm_Chr6g0263431 RchiOBHm_Chr7g0201421
rosa_laevigata	RLG00000003717 RLG00000014339 RLG00000027925 RLG00000027932
rosa_multiflora	Rmu_sc0000617.1_g000006 Rmu_sc0000617.1_g000007 Rmu_sc0003785.1_g000005 Rmu_ssc0000250.1_g000023
rosa_rugosa	Rorug05G0361200 Rorug07G0060800 Rorug07G0063600
rosa_samantha	Rh1BG300100 Rh1DG332000 Rh2BG009800 Rh4AG221400 Rh4BG223400 Rh4DG220400 Rh4DG220500 Rh6BG119600 Rh6CG117600 Rh7AG186500 Rh7BG189500 Rh7BG193300 Rh7BG193400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	2 cut(s)	219, 222
AcsI	RAATTY	1 cut(s)	128
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	4 cut(s)	93, 212, 245, 248
AgsI	TTSAA	3 cut(s)	36, 68, 275
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	112, 151, 230
AluI	AGCT	3 cut(s)	112, 151, 230
Alw21I	GWGCWC	1 cut(s)	153
AlwNI	CAGNNNCTG	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	263
AsuNHI	GCTAGC	1 cut(s)	112
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	153
Bbv12I	GWGCWC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	2 cut(s)	20, 55
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	1 cut(s)	79
BfaI	CTAG	1 cut(s)	113
BisI	GCNGC	2 cut(s)	201, 220
BlsI	GCNGC	2 cut(s)	202, 221
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	61
BmtI	GCTAGC	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 212, 245, 248
Bse3DI	GCAATG	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	105
BseLI	CCNNNNNNNGG	4 cut(s)	93, 212, 245, 248
BseMI	GCAATG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	152
BslI	CCNNNNNNNGG	4 cut(s)	93, 212, 245, 248
BsnI	GGCC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	2 cut(s)	219, 222
BspANI	GGCC	1 cut(s)	86
BspOI	GCTAGC	1 cut(s)	116
BsrDI	GCAATG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	1 cut(s)	211
CviJI	RGCY	6 cut(s)	86, 97, 112, 122, 151, 230
CviKI_1	RGCY	6 cut(s)	86, 97, 112, 122, 151, 230
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	152
EcoICRI	GAGCTC	1 cut(s)	151
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	1 cut(s)	214
FaiI	YATR	1 cut(s)	212
FatI	CATG	1 cut(s)	210
FauI	CCCGC	1 cut(s)	215
FbaI	TGATCA	1 cut(s)	79
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	201, 220
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	2 cut(s)	201, 220
FspBI	CTAG	1 cut(s)	113
GluI	GCNGC	2 cut(s)	201, 220
HaeIII	GGCC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	214
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	157
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	2 cut(s)	154, 206
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	2 cut(s)	139, 252
HpyCH4V	TGCA	2 cut(s)	74, 165
Hsp92II	CATG	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	2 cut(s)	148, 208
LpnPI	CCDG	6 cut(s)	68, 176, 203, 219, 231, 246
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	113
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	3 cut(s)	73, 80, 287
MfeI	CAATTG	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	2 cut(s)	75, 128
MlyI	GAGTC	1 cut(s)	166
MnlI	CCTC	3 cut(s)	112, 127, 249
MspR9I	CCNGG	1 cut(s)	191
MunI	CAATTG	1 cut(s)	75
MvaI	CCWGG	1 cut(s)	191
NdeII	GATC	1 cut(s)	79
NheI	GCTAGC	1 cut(s)	112
NlaIII	CATG	1 cut(s)	214
PaeR7I	CTCGAG	1 cut(s)	152
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	202, 221
PleI	GAGTC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SacI	GAGCTC	1 cut(s)	153
SalI	GTCGAC	1 cut(s)	281
SatI	GCNGC	2 cut(s)	201, 220
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	3 cut(s)	114, 153, 232
SfaNI	GCATC	1 cut(s)	61
Sfr274I	CTCGAG	1 cut(s)	152
SinI	GGWCC	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	152
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	2 cut(s)	75, 128
SsiI	CCGC	2 cut(s)	219, 222
SspMI	CTAG	1 cut(s)	113
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	189
TaqI	TCGA	4 cut(s)	99, 132, 153, 282
TasI	AATT	2 cut(s)	75, 128
TauI	GCSGC	1 cut(s)	222
TscAI	CASTG	1 cut(s)	98
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	141, 158
TspRI	CASTG	1 cut(s)	98
Van91I	CCANNNNNTGG	1 cut(s)	93
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	282
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.