Rh6CG117600
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003935
Physical Location & Seq
Reverse (-)
13692499 .. 13692789
291 bp
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UTR
Exon/CDS
Intron
Rh6CG117600.1

Sequence Viewer

Length: 291 bp
ATGGTCAAGGAGGCAGAGAAGTACAAATTAGAGGATGAGGAATTCATAAATAAAGCGGAGGCTAAAATTGCATTGGAAAACTACGCAAATGACATGAGGAACACAGTTTCTCATCTCCCAAATCTCGAGCTCGCGGACAAGAAGAAAATTGGGAATGCGATTAAACAGGCAAAACGGTGGCTCAATGAAAACCATCTTGCTGAGTGTGACGAATATAGGGATCAGACGAAACGGCTAGAGAACATTGGCAATCCCATTATTGCCAAAGCCAGGGGTGATGGCAGTGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

96

Amino Acids

10.98

Weight (kDa)

6.13

Isoelectric Point (pI)

39.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 1 - 90 1.7e-07 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 134
AciI CCGC 2 cut(s) 56, 134
AclWI GGATC 1 cut(s) 228
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 270
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 132
AlwI GGATC 1 cut(s) 228
Ama87I CYCGRG 1 cut(s) 125
ApoI RAATTY 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 287
AvaI CYCGRG 1 cut(s) 125
BanII GRGCYC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 132
BccI CCATC 2 cut(s) 201, 272
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 271
BfaI CTAG 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 271
BmeT110I CYCGRG 1 cut(s) 125
BmrFI CCNGG 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 192
Bsh1236I CGCG 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 270
BsmI GAATGC 1 cut(s) 160
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 220
BspACI CCGC 2 cut(s) 56, 134
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 1 cut(s) 134
BspPI GGATC 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 220
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 2 cut(s) 106, 177
BstC8I GCNNGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 134
BstKTI GATC 1 cut(s) 223
BstMBI GATC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 269
BstUI CGCG 1 cut(s) 134
BtsCI GGATG 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 289
BtsIMutI CAGTG 1 cut(s) 289
Cac8I GCNNGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 22
CviAII CATG 1 cut(s) 94
CviJI RGCY 5 cut(s) 62, 130, 181, 235, 269
CviKI_1 RGCY 5 cut(s) 62, 130, 181, 235, 269
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 1 cut(s) 201
DpnI GATC 1 cut(s) 222
DpnII GATC 1 cut(s) 220
Ecl136II GAGCTC 1 cut(s) 130
Eco24I GRGCYC 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 125
EcoICRI GAGCTC 1 cut(s) 130
EcoRI GAATTC 1 cut(s) 41
EcoRII CCWGG 1 cut(s) 269
EcoT38I GRGCYC 1 cut(s) 132
FaeI CATG 1 cut(s) 97
FaiI YATR 3 cut(s) 47, 95, 216
FatI CATG 1 cut(s) 93
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 132
FspBI CTAG 1 cut(s) 236
Hin1II CATG 1 cut(s) 97
HphI GGTGA 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 106, 177
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 201
Hsp92II CATG 1 cut(s) 97
Kzo9I GATC 1 cut(s) 220
LpnPI CCDG 3 cut(s) 152, 256, 283
MaeI CTAG 1 cut(s) 236
MaeIII GTNAC 1 cut(s) 206
MalI GATC 1 cut(s) 222
MboI GATC 1 cut(s) 220
MboII GAAGA 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 4 cut(s) 26, 41, 66, 147
MnlI CCTC 5 cut(s) 4, 25, 31, 52, 90
MseI TTAA 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 271
Mva1269I GAATGC 1 cut(s) 160
MvaI CCWGG 1 cut(s) 271
MvnI CGCG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 1 cut(s) 220
NlaIII CATG 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 206
PaeR7I CTCGAG 1 cut(s) 125
PctI GAATGC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 162
Sau3AI GATC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 1 cut(s) 132
SetI ASST 1 cut(s) 132
Sfr274I CTCGAG 1 cut(s) 125
SlaI CTCGAG 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 4 cut(s) 26, 41, 66, 147
SsiI CCGC 2 cut(s) 56, 134
SspMI CTAG 1 cut(s) 236
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 1 cut(s) 269
TaaI ACNGT 2 cut(s) 106, 177
TaqI TCGA 1 cut(s) 126
TasI AATT 4 cut(s) 26, 41, 66, 147
TatI WGTACW 1 cut(s) 21
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 34, 201
TspRI CASTG 1 cut(s) 289
XapI RAATTY 1 cut(s) 41
XhoI CTCGAG 1 cut(s) 125
XspI CTAG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.