Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003935

Physical Location & Seq

Genomic Coordinates Reverse (-)

27419599 .. 27419844

Gene Structure 246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1225800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGAGAAGGCCATTGACGAGGCAATCGAGTGGCTAGACCGGAACCAGTTGGCTGAGGTGGAGGAGTTTAAGGATAAGCAAAAGGAGTTGGAGGGATTGTGCAACACGATTATTACCAAAATGTATCAAGGTGCTGGTGGGGATGTGCCAATGGGCGGTGGTGCTCGGATGCCTGGAGGTGGAAACGCTAGCTGTGGTGGTGGATCAGGAGCCGGACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70

Protein Analysis

74

Amino Acids

7.54

Weight (kDa)

4.49

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003935)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02510 FvH4_3g13691 FvH4_3g13733 FvH4_5g38882
malus_domestica	MD07G1197000.v1.1 MD17G1225800.v1.1
pyrus_communis	pycom17g22950
rosa_chinensis	RchiOBHm_Chr4g0419761 RchiOBHm_Chr6g0263431 RchiOBHm_Chr7g0201421
rosa_laevigata	RLG00000003717 RLG00000014339 RLG00000027925 RLG00000027932
rosa_multiflora	Rmu_sc0000617.1_g000006 Rmu_sc0000617.1_g000007 Rmu_sc0003785.1_g000005 Rmu_ssc0000250.1_g000023
rosa_rugosa	Rorug05G0361200 Rorug07G0060800 Rorug07G0063600
rosa_samantha	Rh1BG300100 Rh1DG332000 Rh2BG009800 Rh4AG221400 Rh4BG223400 Rh4DG220400 Rh4DG220500 Rh6BG119600 Rh6CG117600 Rh7AG186500 Rh7BG189500 Rh7BG193300 Rh7BG193400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	1 cut(s)	211
AfiI	CCNNNNNNNGG	2 cut(s)	155, 179
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw21I	GWGCWC	1 cut(s)	166
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	215
AsuNHI	GCTAGC	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	166
BbvCI	CCTCAGC	1 cut(s)	54
BciT130I	CCWGG	1 cut(s)	174
BfaI	CTAG	2 cut(s)	35, 189
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	2 cut(s)	44, 211
BmrFI	CCNGG	1 cut(s)	174
BmsI	GCATC	1 cut(s)	159
BmtI	GCTAGC	1 cut(s)	192
BpmI	CTGGAG	1 cut(s)	195
Bpu10I	CCTNAGC	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 179
Bse1I	ACTGG	1 cut(s)	46
BseBI	CCWGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	148, 174
BseLI	CCNNNNNNNGG	2 cut(s)	155, 179
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	46
BseRI	GAGGAG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	40, 213
BslI	CCNNNNNNNGG	2 cut(s)	155, 179
BsnI	GGCC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	203
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	44, 211
BspOI	GCTAGC	1 cut(s)	192
BspPI	GGATC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	46
BssMI	GATC	1 cut(s)	203
Bst2UI	CCWGG	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	190
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	148, 174
BstKTI	GATC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	203
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	2 cut(s)	148, 174
Cac8I	GCNNGC	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	215
CviJI	RGCY	5 cut(s)	11, 34, 53, 192, 212
CviKI_1	RGCY	5 cut(s)	11, 34, 53, 192, 212
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	205
DpnII	GATC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	172
FokI	GGATG	2 cut(s)	155, 181
FspBI	CTAG	2 cut(s)	35, 189
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	2 cut(s)	40, 213
HpaII	CCGG	2 cut(s)	40, 213
Hpy188I	TCNGA	1 cut(s)	168
Hpy188III	TCNNGA	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	102
HpyF3I	CTNAG	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	203
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	6 cut(s)	53, 59, 120, 159, 186, 192
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	2 cut(s)	35, 189
MalI	GATC	1 cut(s)	205
MboI	GATC	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	5 cut(s)	13, 49, 55, 85, 170
MseI	TTAA	2 cut(s)	69, 220
MspI	CCGG	2 cut(s)	40, 213
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
NdeII	GATC	1 cut(s)	203
NheI	GCTAGC	1 cut(s)	188
NlaIV	GGNNCC	2 cut(s)	44, 211
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	44, 211
PspPI	GGNCC	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	69, 220
Sau3AI	GATC	1 cut(s)	203
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	5 cut(s)	60, 133, 181, 194, 220
SfaNI	GCATC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	215
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	2 cut(s)	35, 189
StyD4I	CCNGG	1 cut(s)	172
TaqI	TCGA	1 cut(s)	27
Tru1I	TTAA	2 cut(s)	69, 220
Tru9I	TTAA	2 cut(s)	69, 220
VpaK11BI	GGWCC	1 cut(s)	215
XspI	CTAG	2 cut(s)	35, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.