Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003935

Physical Location & Seq

Genomic Coordinates Reverse (-)

18556594 .. 18557407

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG119600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGCATTGGCTGCAAGAGGTGAGGGTCCAGCTATCGGTATTGACCTTGGAACAACTTACTCATGCGTTGGTGTTTGGCAACATGATCGTGTTGAGATCATAGCCAATGATCAAGGAAACAGAACGACGCCGTCATGTGTTGCTTTTACCAACACCGGGCGTTTGATTGGTGATGCTGCCAAGAACCAGGCTTCTATGAACCCCATCAACACTATTTTTGATGCAAAGCGATTGATCGGCAGGAAATTCAGTGATGCTTCAGTTAAGAGTGACATGAAGCTATGGCCTTTCAAGATGGTCAAGGAGGCAGAGAAGTACAAATTAGAGGATGAGGAATTCATAAATAAAGCGGAGGCTAAAATTGCATTGGAAAACTACGCAAATGACATGAGGAACACAGTTTCTCATCTCCCAAATCTCGAGCTCGCGGACAAGAAGAAAATTGGGAATGCGATTAAACAGGCAAAACGGTGGCTCAATGAAAACCATCTTGCTGAGTGTGACGAATATAGGGATCAGACGAAACGGCTAGAGAACATTGGCAATCCCATTATTGCCAAAGCCAGGGGTGATGGCAGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016567 GO:0017076 GO:0019538 GO:0019899 GO:0030312 GO:0030554 GO:0031090 GO:0031625 GO:0032446 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046686 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

194

Amino Acids

21.57

Weight (kDa)

8.36

Isoelectric Point (pI)

29.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	11 - 101	8.5e-39	Hsp70 protein
HSP70	PF00012	98 - 187	8.4e-07	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003935)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02510 FvH4_3g13691 FvH4_3g13733 FvH4_5g38882
malus_domestica	MD07G1197000.v1.1 MD17G1225800.v1.1
pyrus_communis	pycom17g22950
rosa_chinensis	RchiOBHm_Chr4g0419761 RchiOBHm_Chr6g0263431 RchiOBHm_Chr7g0201421
rosa_laevigata	RLG00000003717 RLG00000014339 RLG00000027925 RLG00000027932
rosa_multiflora	Rmu_sc0000617.1_g000006 Rmu_sc0000617.1_g000007 Rmu_sc0003785.1_g000005 Rmu_ssc0000250.1_g000023
rosa_rugosa	Rorug05G0361200 Rorug07G0060800 Rorug07G0063600
rosa_samantha	Rh1BG300100 Rh1DG332000 Rh2BG009800 Rh4AG221400 Rh4BG223400 Rh4DG220400 Rh4DG220500 Rh6BG119600 Rh6CG117600 Rh7AG186500 Rh7BG189500 Rh7BG193300 Rh7BG193400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	428
AciI	CCGC	2 cut(s)	350, 428
AclWI	GGATC	1 cut(s)	522
AcsI	RAATTY	2 cut(s)	245, 335
AcuI	CTGAAG	1 cut(s)	243
AcyI	GRCGYC	1 cut(s)	128
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	3 cut(s)	35, 156, 564
AgsI	TTSAA	1 cut(s)	292
AjnI	CCWGG	2 cut(s)	186, 563
AluBI	AGCT	3 cut(s)	32, 280, 424
AluI	AGCT	3 cut(s)	32, 280, 424
Alw21I	GWGCWC	1 cut(s)	426
AlwI	GGATC	1 cut(s)	522
Ama87I	CYCGRG	1 cut(s)	419
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	2 cut(s)	11, 176
ApoI	RAATTY	2 cut(s)	245, 335
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	32, 182, 581
AvaI	CYCGRG	1 cut(s)	419
AvaII	GGWCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	1 cut(s)	163
BccI	CCATC	4 cut(s)	212, 289, 495, 566
BceAI	ACGGC	2 cut(s)	115, 542
BcgI	CGANNNNNNTGC	2 cut(s)	68, 102
BciT130I	CCWGG	2 cut(s)	188, 565
BclI	TGATCA	1 cut(s)	109
BcnI	CCSGG	1 cut(s)	157
BfaI	CTAG	1 cut(s)	530
BisI	GCNGC	2 cut(s)	12, 177
BlsI	GCNGC	2 cut(s)	13, 178
Bme1390I	CCNGG	3 cut(s)	157, 188, 565
Bme18I	GGWCC	1 cut(s)	26
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	3 cut(s)	157, 188, 565
BmsI	GCATC	3 cut(s)	163, 211, 244
BpuMI	CCSGG	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	46, 564
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 156, 564
BseBI	CCWGG	2 cut(s)	188, 565
BseDI	CCNNGG	2 cut(s)	46, 564
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	3 cut(s)	35, 156, 564
BseMII	CTCAG	1 cut(s)	486
BseXI	GCAGC	1 cut(s)	163
Bsh1236I	CGCG	1 cut(s)	428
BshFI	GGCC	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	156
BslI	CCNNNNNNNGG	3 cut(s)	35, 156, 564
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	1 cut(s)	286
BsoBI	CYCGRG	1 cut(s)	419
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	5 cut(s)	85, 96, 109, 234, 514
BspACI	CCGC	2 cut(s)	350, 428
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	1 cut(s)	27
BspPI	GGATC	1 cut(s)	522
BssECI	CCNNGG	2 cut(s)	46, 564
BssMI	GATC	5 cut(s)	85, 96, 109, 234, 514
BssNI	GRCGYC	1 cut(s)	128
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	2 cut(s)	188, 565
Bst4CI	ACNGT	2 cut(s)	400, 471
BstACI	GRCGYC	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	1 cut(s)	428
BstKTI	GATC	5 cut(s)	88, 99, 112, 237, 517
BstMBI	GATC	5 cut(s)	85, 96, 109, 234, 514
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 362
BstNI	CCWGG	2 cut(s)	188, 565
BstSCI	CCNGG	3 cut(s)	155, 186, 563
BstUI	CGCG	1 cut(s)	428
BstV1I	GCAGC	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	583
BtsIMutI	CAGTG	2 cut(s)	256, 583
Cac8I	GCNNGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	26
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	5 cut(s)	63, 83, 135, 274, 388
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	5 cut(s)	87, 98, 111, 236, 516
DpnII	GATC	5 cut(s)	85, 96, 109, 234, 514
Ecl136II	GAGCTC	1 cut(s)	424
Eco130I	CCWWGG	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	26
Eco53kI	GAGCTC	1 cut(s)	424
Eco57I	CTGAAG	1 cut(s)	243
Eco88I	CYCGRG	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	424
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	186, 563
EcoT14I	CCWWGG	1 cut(s)	46
EcoT38I	GRGCYC	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	5 cut(s)	66, 86, 138, 277, 391
FatI	CATG	5 cut(s)	62, 82, 134, 273, 387
FbaI	TGATCA	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	12, 177
FokI	GGATG	1 cut(s)	341
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	2 cut(s)	12, 177
FspBI	CTAG	1 cut(s)	530
GluI	GCNGC	2 cut(s)	12, 177
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	1 cut(s)	136
Hin1I	GRCGYC	1 cut(s)	128
Hin1II	CATG	5 cut(s)	66, 86, 138, 277, 391
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	3 cut(s)	32, 182, 581
Hpy188I	TCNGA	1 cut(s)	519
Hpy188III	TCNNGA	2 cut(s)	292, 419
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4III	ACNGT	2 cut(s)	400, 471
HpyCH4V	TGCA	3 cut(s)	14, 224, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 362
HpyF3I	CTNAG	1 cut(s)	495
Hsp92I	GRCGYC	1 cut(s)	128
Hsp92II	CATG	5 cut(s)	66, 86, 138, 277, 391
Ksp22I	TGATCA	1 cut(s)	109
Kzo9I	GATC	5 cut(s)	85, 96, 109, 234, 514
LpnPI	CCDG	8 cut(s)	42, 169, 173, 200, 226, 446, 550, 577
Lsp1109I	GCAGC	1 cut(s)	163
LweI	GCATC	3 cut(s)	163, 211, 244
MaeI	CTAG	1 cut(s)	530
MaeIII	GTNAC	2 cut(s)	269, 500
MalI	GATC	5 cut(s)	87, 98, 111, 236, 516
MboI	GATC	5 cut(s)	85, 96, 109, 234, 514
MboII	GAAGA	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	426
MluCI	AATT	5 cut(s)	245, 320, 335, 360, 441
MnlI	CCTC	7 cut(s)	11, 16, 298, 319, 325, 346, 384
MseI	TTAA	2 cut(s)	264, 456
MslI	CAYNNNNRTG	1 cut(s)	87
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	3 cut(s)	157, 188, 565
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	188, 565
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	11, 362
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	5 cut(s)	85, 96, 109, 234, 514
NlaIII	CATG	5 cut(s)	66, 86, 138, 277, 391
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	269, 500
PaeR7I	CTCGAG	1 cut(s)	419
PctI	GAATGC	1 cut(s)	454
PflFI	GACNNNGTC	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	13, 178
Psp124BI	GAGCTC	1 cut(s)	426
Psp6I	CCWGG	2 cut(s)	186, 563
PspGI	CCWGG	2 cut(s)	186, 563
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	26
PsyI	GACNNNGTC	1 cut(s)	130
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	2 cut(s)	264, 456
SatI	GCNGC	2 cut(s)	12, 177
Sau3AI	GATC	5 cut(s)	85, 96, 109, 234, 514
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	3 cut(s)	157, 188, 565
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	5 cut(s)	22, 34, 48, 282, 426
SfaNI	GCATC	3 cut(s)	163, 211, 244
Sfr274I	CTCGAG	1 cut(s)	419
SinI	GGWCC	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	5 cut(s)	245, 320, 335, 360, 441
SsiI	CCGC	2 cut(s)	350, 428
SspMI	CTAG	1 cut(s)	530
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	3 cut(s)	155, 186, 563
StyI	CCWWGG	1 cut(s)	46
TaaI	ACNGT	2 cut(s)	400, 471
TaqI	TCGA	1 cut(s)	420
TasI	AATT	5 cut(s)	245, 320, 335, 360, 441
TatI	WGTACW	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	264, 456
Tru9I	TTAA	2 cut(s)	264, 456
TscAI	CASTG	2 cut(s)	256, 583
TseFI	GTSAC	2 cut(s)	269, 500
TseI	GCWGC	2 cut(s)	11, 176
Tsp45I	GTSAC	2 cut(s)	269, 500
TspDTI	ATGAA	4 cut(s)	212, 290, 328, 495
TspRI	CASTG	2 cut(s)	256, 583
Tth111I	GACNNNGTC	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	2 cut(s)	245, 335
XhoI	CTCGAG	1 cut(s)	419
XspI	CTAG	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.