RLG00000003717
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003935
Physical Location & Seq
Reverse (-)
51997739 .. 51998131
393 bp
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UTR
Exon/CDS
Intron
RLM00000003717

Sequence Viewer

Length: 393 bp
ATGGAATCTTGTTTGTCTCCGCCGAGGAAAACTCAACAAATAATAAGAGCAAGATCACAATCGCCAATAACAACAAAGGCAGGTTTATGCAAGGAGGAAATTGAGAAGATGGTCGATGAGGCAAAGAAGTACATGTCCAATGACGATGATTATAAGAAGAAAATGGAGGCTATGGTTGCATTAGAAAACTATGCAACCAACAAGATGGACACAGTTCATAATCGCTCAAACCTCAATCAAGAAGATAAGAAAAGAATTGTGGATGCGGTTGAAAAAGTCCTTGAGTGGCTCGATGAGAATGAGAATCATCTTGCTGAATGTGAAGAATATGATGATAAGCTGAGAAAGCTCGATAACTTGTGCAGTCCCATTCTGGATGACATGAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

131

Amino Acids

15.16

Weight (kDa)

4.94

Isoelectric Point (pI)

72.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 17 - 128 3.4e-09 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 71
AciI CCGC 2 cut(s) 20, 266
AfaI GTAC 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 1 cut(s) 272
AluBI AGCT 2 cut(s) 340, 349
AluI AGCT 2 cut(s) 340, 349
Alw26I GTCTC 1 cut(s) 21
BccI CCATC 2 cut(s) 103, 199
BcoDI GTCTC 1 cut(s) 21
BfuAI ACCTGC 1 cut(s) 71
BmsI GCATC 1 cut(s) 253
BplI GAGNNNNNCTC 2 cut(s) 16, 48
BpuEI CTTGAG 1 cut(s) 302
BsaBI GATNNNNATC 1 cut(s) 58
BsaJI CCNNGG 1 cut(s) 23
Bse8I GATNNNNATC 1 cut(s) 58
BseDI CCNNGG 1 cut(s) 23
BseGI GGATG 2 cut(s) 268, 382
BseJI GATNNNNATC 1 cut(s) 58
BseMII CTCAG 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 351
Bsp143I GATC 1 cut(s) 53
BspACI CCGC 2 cut(s) 20, 266
BspCNI CTCAG 1 cut(s) 333
BspMI ACCTGC 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 214
BstDEI CTNAG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 268, 382
BstKTI GATC 1 cut(s) 56
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 176, 346
BstNSI RCATGY 1 cut(s) 136
BstXI CCANNNNNNTGG 1 cut(s) 205
BtsCI GGATG 2 cut(s) 268, 382
BveI ACCTGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 133, 382
CviJI RGCY 4 cut(s) 170, 289, 340, 349
CviKI_1 RGCY 4 cut(s) 170, 289, 340, 349
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 1 cut(s) 341
DpnI GATC 1 cut(s) 55
DpnII GATC 1 cut(s) 53
EciI GGCGGA 1 cut(s) 9
FaeI CATG 2 cut(s) 136, 385
FaiI YATR 9 cut(s) 88, 134, 153, 173, 192, 219, 330, 383, 391
FaqI GGGAC 1 cut(s) 351
FatI CATG 2 cut(s) 132, 381
FokI GGATG 2 cut(s) 275, 389
Hin1II CATG 2 cut(s) 136, 385
HinfI GANTC 2 cut(s) 5, 304
Hpy188III TCNNGA 2 cut(s) 239, 374
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 4 cut(s) 90, 179, 194, 363
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 346
HpyF3I CTNAG 1 cut(s) 341
Hsp92II CATG 2 cut(s) 136, 385
Kzo9I GATC 1 cut(s) 53
LpnPI CCDG 2 cut(s) 66, 359
LweI GCATC 1 cut(s) 253
MalI GATC 1 cut(s) 55
MboI GATC 1 cut(s) 53
MboII GAAGA 4 cut(s) 118, 169, 254, 335
MluCI AATT 2 cut(s) 99, 255
MnlI CCTC 5 cut(s) 18, 88, 112, 160, 242
MwoI GCNNNNNNNGC 2 cut(s) 176, 346
NdeII GATC 1 cut(s) 53
NlaIII CATG 2 cut(s) 136, 385
NmeAIII GCCGAG 1 cut(s) 48
NspI RCATGY 1 cut(s) 136
PciI ACATGT 1 cut(s) 132
PfeI GAWTC 2 cut(s) 5, 304
PscI ACATGT 1 cut(s) 132
PsiI TTATAA 1 cut(s) 153
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
Sau3AI GATC 1 cut(s) 53
SetI ASST 4 cut(s) 85, 234, 342, 351
SfaNI GCATC 1 cut(s) 253
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 99, 255
SsiI CCGC 2 cut(s) 20, 266
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 3 cut(s) 114, 291, 351
TasI AATT 2 cut(s) 99, 255
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 2 cut(s) 5, 304
TspDTI ATGAA 1 cut(s) 206
XceI RCATGY 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.