Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0003935

Physical Location & Seq

Genomic Coordinates Reverse (-)

16963928 .. 16964888

Gene Structure 961 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027932

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAATGGTATTCGTATTATTAACGAGCGAACAGCTGCTGCCATTGCCTACGGTCTCGATAGAAAAGGCAGCAAGGCACCAATATTGCAGGAAAAAAATGTTCTTATTTTTTATCTTGGTGGTGGTACTTTTGACGTTTCCCTTCTTCAAATTGAAGAAGGTGCTTTTGAGGTGAAAGCTACAGTTGGTGATACTCATCTTGGGGGTGAAATTTTTGATAATAGAGTTTGTACAAGAGTTCCGAAAGAATGTTTGAGAGATGATAGGATGGACAAGAGCATTGTTCATGATGTTGTTCTTGTTGGTGGATCTACGCGAATTCCCAAGGCACAACAGCTATTGCAAGACTTATTTGATGGCAAGGAGCTTTGCAAAAGTATCAATCCTGATGAAGCAGTTGCATATGGTGCCTCTTTGAACCGTGAAGAAAATATCGAGAAGGTTCAGGACTTGCTTTTGTTGGATGTCACTCCCTTTTCCTTATCTGAGCAAGAAATTGAGAAGATGGTCAAGGAAGCAGAGAAGTACAAGTTAAGGGATGAGGAGAACAGGAAGAAAATGGAGGCCAAGTATGCATTAAAAGATTATGCATCCAACACGATGGACACAGTTTCTAACATCCCAAATCTGAACGAAGCAGACAAGACAAAAATTGTAGATGCAGTTGAAACGGTTATGCGATGGCTTGATGATAATGAAAGCCAACTTGCTGAATGTGAAGTTGTGAACATTATGAGAATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016567 GO:0017076 GO:0019538 GO:0019899 GO:0030312 GO:0030554 GO:0031090 GO:0031625 GO:0032446 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046686 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

249

Amino Acids

27.94

Weight (kDa)

4.89

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	2 - 77	8.2e-29	Hsp70 protein
HSP70	PF00012	80 - 162	5.8e-23	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003935)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02510 FvH4_3g13691 FvH4_3g13733 FvH4_5g38882
malus_domestica	MD07G1197000.v1.1 MD17G1225800.v1.1
pyrus_communis	pycom17g22950
rosa_chinensis	RchiOBHm_Chr4g0419761 RchiOBHm_Chr6g0263431 RchiOBHm_Chr7g0201421
rosa_laevigata	RLG00000003717 RLG00000014339 RLG00000027925 RLG00000027932
rosa_multiflora	Rmu_sc0000617.1_g000006 Rmu_sc0000617.1_g000007 Rmu_sc0003785.1_g000005 Rmu_ssc0000250.1_g000023
rosa_rugosa	Rorug05G0361200 Rorug07G0060800 Rorug07G0063600
rosa_samantha	Rh1BG300100 Rh1DG332000 Rh2BG009800 Rh4AG221400 Rh4BG223400 Rh4DG220400 Rh4DG220500 Rh6BG119600 Rh6CG117600 Rh7AG186500 Rh7BG189500 Rh7BG193300 Rh7BG193400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	76, 407
AccII	CGCG	1 cut(s)	316
AclWI	GGATC	1 cut(s)	316
AcsI	RAATTY	2 cut(s)	210, 318
AfaI	GTAC	3 cut(s)	127, 232, 527
AgsI	TTSAA	4 cut(s)	149, 155, 418, 668
AluBI	AGCT	4 cut(s)	35, 179, 337, 367
AluI	AGCT	4 cut(s)	35, 179, 337, 367
Alw26I	GTCTC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	38
AoxI	GGCC	1 cut(s)	564
ApeKI	GCWGC	3 cut(s)	35, 38, 69
ApoI	RAATTY	2 cut(s)	210, 318
AsuHPI	GGTGA	3 cut(s)	184, 200, 218
BanI	GGYRCC	2 cut(s)	76, 407
BbvI	GCAGC	3 cut(s)	22, 25, 81
BccI	CCATC	5 cut(s)	262, 350, 499, 595, 675
BcoDI	GTCTC	1 cut(s)	59
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	3 cut(s)	36, 39, 70
BlsI	GCNGC	3 cut(s)	37, 40, 71
BmiI	GGNNCC	2 cut(s)	78, 409
BmsI	GCATC	2 cut(s)	599, 649
BsaBI	GATNNNNATC	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bse3DI	GCAATG	1 cut(s)	42
Bse8I	GATNNNNATC	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	324
BseGI	GGATG	5 cut(s)	273, 469, 544, 590, 618
BseJI	GATNNNNATC	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	477
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	3 cut(s)	22, 25, 81
Bsh1236I	CGCG	1 cut(s)	316
BshFI	GGCC	1 cut(s)	566
BshNI	GGYRCC	2 cut(s)	76, 407
BsmAI	GTCTC	1 cut(s)	59
BsnI	GGCC	1 cut(s)	566
Bso31I	GGTCTC	1 cut(s)	59
Bsp1407I	TGTACA	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	308
BspANI	GGCC	1 cut(s)	566
BspCNI	CTCAG	1 cut(s)	478
BspFNI	CGCG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	78, 409
BspPI	GGATC	1 cut(s)	316
BspT107I	GGYRCC	2 cut(s)	76, 407
BspTNI	GGTCTC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	324
BssMI	GATC	1 cut(s)	308
BssT1I	CCWWGG	1 cut(s)	324
Bst4CI	ACNGT	5 cut(s)	53, 184, 422, 610, 673
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstAUI	TGTACA	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	486
BstF5I	GGATG	5 cut(s)	273, 469, 544, 590, 618
BstFNI	CGCG	1 cut(s)	316
BstKTI	GATC	1 cut(s)	311
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 407, 572
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	316
BstV1I	GCAGC	3 cut(s)	22, 25, 81
BstX2I	RGATCY	1 cut(s)	308
BstXI	CCANNNNNNTGG	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	566
BtgZI	GCGATG	1 cut(s)	694
BtsCI	GGATG	5 cut(s)	273, 469, 544, 590, 618
CaiI	CAGNNNCTG	1 cut(s)	38
CciI	TCATGA	1 cut(s)	286
Csp6I	GTAC	3 cut(s)	126, 231, 526
CviAII	CATG	1 cut(s)	287
CviJI	RGCY	7 cut(s)	35, 179, 337, 367, 566, 685, 702
CviKI_1	RGCY	7 cut(s)	35, 179, 337, 367, 566, 685, 702
CviQI	GTAC	3 cut(s)	126, 231, 526
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	324
Eco31I	GGTCTC	1 cut(s)	59
EcoRI	GAATTC	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	324
EcoT22I	ATGCAT	2 cut(s)	577, 592
ErhI	CCWWGG	1 cut(s)	324
FaeI	CATG	1 cut(s)	290
FaiI	YATR	7 cut(s)	288, 403, 405, 573, 588, 677, 734
FatI	CATG	1 cut(s)	286
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	36, 39, 70
FokI	GGATG	5 cut(s)	280, 476, 551, 577, 605
Fsp4HI	GCNGC	3 cut(s)	36, 39, 70
GluI	GCNGC	3 cut(s)	36, 39, 70
HaeIII	GGCC	1 cut(s)	566
Hin1II	CATG	1 cut(s)	290
HphI	GGTGA	3 cut(s)	184, 200, 218
Hpy166II	GTNNAC	1 cut(s)	727
Hpy188I	TCNGA	3 cut(s)	243, 487, 630
Hpy188III	TCNNGA	5 cut(s)	56, 287, 386, 436, 446
Hpy8I	GTNNAC	1 cut(s)	727
HpyAV	CCTTC	3 cut(s)	152, 152, 433
HpyCH4III	ACNGT	5 cut(s)	53, 184, 422, 610, 673
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	7 cut(s)	88, 343, 372, 401, 575, 590, 662
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 407, 572
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	1 cut(s)	290
Kzo9I	GATC	1 cut(s)	308
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	4 cut(s)	74, 399, 431, 535
Lsp1109I	GCAGC	3 cut(s)	22, 25, 81
LweI	GCATC	2 cut(s)	599, 649
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	5 cut(s)	137, 167, 437, 514, 565
MflI	RGATCY	1 cut(s)	308
MluCI	AATT	5 cut(s)	150, 210, 318, 495, 651
MmeI	TCCRAC	2 cut(s)	441, 618
MnlI	CCTC	4 cut(s)	163, 421, 535, 556
Mph1103I	ATGCAT	2 cut(s)	577, 592
MseI	TTAA	3 cut(s)	21, 533, 578
MspA1I	CMGCKG	1 cut(s)	35
MvnI	CGCG	1 cut(s)	316
MwoI	GCNNNNNNNGC	3 cut(s)	44, 407, 572
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	1 cut(s)	308
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	2 cut(s)	78, 409
NmuCI	GTSAC	1 cut(s)	466
NsiI	ATGCAT	2 cut(s)	577, 592
PagI	TCATGA	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	37, 40, 71
PspN4I	GGNNCC	2 cut(s)	78, 409
PstNI	CAGNNNCTG	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	3 cut(s)	127, 232, 527
RsaNI	GTAC	3 cut(s)	126, 231, 526
SaqAI	TTAA	3 cut(s)	21, 533, 578
SatI	GCNGC	3 cut(s)	36, 39, 70
Sau3AI	GATC	1 cut(s)	308
SetI	ASST	8 cut(s)	37, 138, 163, 174, 181, 339, 369, 444
SfaNI	GCATC	2 cut(s)	599, 649
SfcI	CTRYAG	1 cut(s)	180
Sse9I	AATT	5 cut(s)	150, 210, 318, 495, 651
SspI	AATATT	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	324
TaaI	ACNGT	5 cut(s)	53, 184, 422, 610, 673
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	57, 435
TasI	AATT	5 cut(s)	150, 210, 318, 495, 651
TatI	WGTACW	2 cut(s)	230, 525
Tru1I	TTAA	3 cut(s)	21, 533, 578
Tru9I	TTAA	3 cut(s)	21, 533, 578
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	3 cut(s)	35, 38, 69
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	4 cut(s)	17, 275, 405, 711
XapI	RAATTY	2 cut(s)	210, 318
Zsp2I	ATGCAT	2 cut(s)	577, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.