Rmu_sc0003785.1_g000005
HSP70 Family

heat shock

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003785.1
OG0003935
Physical Location & Seq
Reverse (-)
26223 .. 26558
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003785.1_g000005.1.cds

Sequence Viewer

Length: 336 bp
atgatgacaatcacaagagataattgcaagtgggaaattgagaagatggtcaaggaggcagagaagtacaagttaaaggatgaggaattcaaaaataaagtggaggctaaaatggcattggaaaactatgcaaatgacatgaggaacacagtttctcatctcccaaagctcgagctcgtggacaagaagaaaattgggaatgcgattaaacaggcaaaacggtggctcaatgaagaccagcttgctaaagttgacgaatataaggatcagatgaaatggctagagaacatttgcaatcccattattgcaaaagccaggggtgatgggtgtggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169
Pfam Domains
Protein Families
HSP70

Protein Analysis

111

Amino Acids

13.03

Weight (kDa)

8.69

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 273
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 68
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 3 cut(s) 169, 175, 241
AluI AGCT 3 cut(s) 169, 175, 241
Alw21I GWGCWC 1 cut(s) 177
AlwI GGATC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 170
ApoI RAATTY 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 170
BanII GRGCYC 1 cut(s) 177
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 177
BccI CCATC 2 cut(s) 40, 317
BciT130I CCWGG 1 cut(s) 316
BfaI CTAG 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 170
BmrFI CCNGG 1 cut(s) 316
BpiI GAAGAC 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 316
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 85
BseJI GATNNNNATC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 170
BsmI GAATGC 1 cut(s) 205
BsoBI CYCGRG 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 265
BspPI GGATC 1 cut(s) 273
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 1 cut(s) 265
BssSI CACGAG 1 cut(s) 176
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 151, 222
BstC8I GCNNGC 1 cut(s) 243
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 314
BstV2I GAAGAC 1 cut(s) 240
BtsCI GGATG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 139
CviJI RGCY 8 cut(s) 107, 169, 175, 226, 241, 280, 314, 333
CviKI_1 RGCY 8 cut(s) 107, 169, 175, 226, 241, 280, 314, 333
CviQI GTAC 1 cut(s) 67
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 1 cut(s) 177
Eco53kI GAGCTC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 175
EcoRI GAATTC 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 1 cut(s) 142
FaiI YATR 3 cut(s) 129, 140, 261
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 1 cut(s) 138
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 177
FspBI CTAG 1 cut(s) 281
Hin1II CATG 1 cut(s) 142
HincII GTYRAC 1 cut(s) 253
HindII GTYRAC 1 cut(s) 253
HphI GGTGA 1 cut(s) 332
Hpy166II GTNNAC 2 cut(s) 181, 253
Hpy188I TCNGA 1 cut(s) 270
Hpy8I GTNNAC 2 cut(s) 181, 253
HpyCH4III ACNGT 2 cut(s) 151, 222
HpyCH4V TGCA 4 cut(s) 27, 131, 294, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
Hsp92II CATG 1 cut(s) 142
Kzo9I GATC 1 cut(s) 265
LpnPI CCDG 4 cut(s) 197, 251, 301, 328
MaeI CTAG 1 cut(s) 281
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 3 cut(s) 55, 199, 245
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 4 cut(s) 22, 36, 86, 192
MnlI CCTC 4 cut(s) 49, 76, 97, 135
MseI TTAA 2 cut(s) 74, 207
MspR9I CCNGG 1 cut(s) 316
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 1 cut(s) 113
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 170
PctI GAATGC 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 314
PspGI CCWGG 1 cut(s) 314
PspXI VCTCGAGB 1 cut(s) 170
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 2 cut(s) 74, 207
Sau3AI GATC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 1 cut(s) 177
SetI ASST 3 cut(s) 171, 177, 243
Sfr274I CTCGAG 1 cut(s) 170
SlaI CTCGAG 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 4 cut(s) 22, 36, 86, 192
SspMI CTAG 1 cut(s) 281
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 314
TaaI ACNGT 2 cut(s) 151, 222
TaqI TCGA 1 cut(s) 171
TasI AATT 4 cut(s) 22, 36, 86, 192
TatI WGTACW 1 cut(s) 66
Tru1I TTAA 2 cut(s) 74, 207
Tru9I TTAA 2 cut(s) 74, 207
TspDTI ATGAA 2 cut(s) 246, 287
XapI RAATTY 1 cut(s) 86
XhoI CTCGAG 1 cut(s) 170
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.