Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003935

Physical Location & Seq

Genomic Coordinates Reverse (-)

55646317 .. 55648890

Gene Structure 2574 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG332000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGCCGGAAAAGGAGAGGGACCCGCGATCGGAATCGATCTCGGAACCACTTACAGCTGCGTCGGAGTTTGGCAGCACGACCGTGTCGAGATCATCGCCAACGATCAGGGGAACAGAACGACGCCGTCTTATGTGGCGTTTACCGATACTGAGCGTTTGATCGGTGACGCGGCTAAGAACCAGGTCGCGATGAACCCTATCAACACTGTTTTCGAAGATGAGGAGCTCAAGAAGAAGGTGGAATCAAAGAATGCCTTGGAGAACTATGCTTATAACATGAGGAACACAATCAGAGATGAGAAGATTGCTTCCAAGCTTGACGCTGCAGACAAGAAGAAGATTGAAGATGCAATTGAGCAAGCCATTCAATGGCTGGATGGGAATCAGCTTGCCGAGGCTGAGGAATATGATGACAAGGTGAAGGAGCTTGAAGGCATTTGCAATCCCATCATTGCCAAGATGTATCAGGGGGGTGCTGCTCCCGACATGGGTATGGGTGGAGGCATGGATGAAGATGTTCCTCCTGCTGGTGGCAGTGGTGCTGGTCCCAAGATCGAGGAAGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000302 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0006950 GO:0006979 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016567 GO:0017076 GO:0019538 GO:0019899 GO:0030312 GO:0030554 GO:0031090 GO:0031625 GO:0032446 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046677 GO:0046686 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0070647 GO:0071704 GO:0071944 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

189

Amino Acids

20.44

Weight (kDa)

4.44

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	9 - 71	3.6e-27	Hsp70 protein
HSP70	PF00012	72 - 156	1.6e-07	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003935)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02510 FvH4_3g13691 FvH4_3g13733 FvH4_5g38882
malus_domestica	MD07G1197000.v1.1 MD17G1225800.v1.1
pyrus_communis	pycom17g22950
rosa_chinensis	RchiOBHm_Chr4g0419761 RchiOBHm_Chr6g0263431 RchiOBHm_Chr7g0201421
rosa_laevigata	RLG00000003717 RLG00000014339 RLG00000027925 RLG00000027932
rosa_multiflora	Rmu_sc0000617.1_g000006 Rmu_sc0000617.1_g000007 Rmu_sc0003785.1_g000005 Rmu_ssc0000250.1_g000023
rosa_rugosa	Rorug05G0361200 Rorug07G0060800 Rorug07G0063600
rosa_samantha	Rh1BG300100 Rh1DG332000 Rh2BG009800 Rh4AG221400 Rh4BG223400 Rh4DG220400 Rh4DG220500 Rh6BG119600 Rh6CG117600 Rh7AG186500 Rh7BG189500 Rh7BG193300 Rh7BG193400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AccB7I	CCANNNNNTGG	1 cut(s)	369
AccII	CGCG	3 cut(s)	26, 170, 188
AciI	CCGC	2 cut(s)	24, 170
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	122
AfiI	CCNNNNNNNGG	5 cut(s)	29, 369, 488, 527, 530
AgsI	TTSAA	3 cut(s)	344, 368, 431
AjnI	CCWGG	1 cut(s)	180
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	5 cut(s)	57, 226, 316, 388, 427
AluI	AGCT	5 cut(s)	57, 226, 316, 388, 427
Alw21I	GWGCWC	1 cut(s)	228
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	4 cut(s)	57, 73, 323, 476
Asp700I	GAANNNNTTC	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	20, 545
AsuHPI	GGTGA	2 cut(s)	176, 430
AsuII	TTCGAA	1 cut(s)	213
AvaII	GGWCC	2 cut(s)	20, 545
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	228
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	4 cut(s)	44, 85, 310, 463
BccI	CCATC	2 cut(s)	371, 455
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	324
BisI	GCNGC	5 cut(s)	58, 74, 171, 324, 477
BlsI	GCNGC	5 cut(s)	59, 75, 172, 325, 478
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	2 cut(s)	20, 545
BmgT120I	GGNCC	2 cut(s)	20, 545
BmiI	GGNNCC	4 cut(s)	21, 22, 46, 547
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	337
Bpu10I	CCTNAGC	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	36
BsaBI	GATNNNNATC	2 cut(s)	32, 381
BsaHI	GRCGYC	1 cut(s)	122
BsaJI	CCNNGG	2 cut(s)	255, 393
Bsc4I	CCNNNNNNNGG	5 cut(s)	29, 369, 488, 527, 530
Bse3DI	GCAATG	1 cut(s)	450
Bse8I	GATNNNNATC	2 cut(s)	32, 381
BseBI	CCWGG	1 cut(s)	182
BseCI	ATCGAT	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	255, 393
BseGI	GGATG	2 cut(s)	382, 514
BseJI	GATNNNNATC	2 cut(s)	32, 381
BseLI	CCNNNNNNNGG	5 cut(s)	29, 369, 488, 527, 530
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	2 cut(s)	141, 390
BseRI	GAGGAG	1 cut(s)	236
BseXI	GCAGC	4 cut(s)	44, 85, 310, 463
Bsh1236I	CGCG	3 cut(s)	26, 170, 188
Bsh1285I	CGRYCG	2 cut(s)	30, 82
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	36
BsiEI	CGRYCG	2 cut(s)	30, 82
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	2 cut(s)	33, 531
BslI	CCNNNNNNNGG	5 cut(s)	29, 369, 488, 527, 530
BsmFI	GGGAC	2 cut(s)	33, 531
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	5
Bsp119I	TTCGAA	1 cut(s)	213
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	6 cut(s)	27, 37, 90, 103, 159, 552
Bsp68I	TCGCGA	1 cut(s)	188
BspACI	CCGC	2 cut(s)	24, 170
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	142, 391
BspDI	ATCGAT	1 cut(s)	36
BspFNI	CGCG	3 cut(s)	26, 170, 188
BspLI	GGNNCC	4 cut(s)	21, 22, 46, 547
BspMAI	CTGCAG	1 cut(s)	328
BspT104I	TTCGAA	1 cut(s)	213
BsrDI	GCAATG	1 cut(s)	450
BssECI	CCNNGG	2 cut(s)	255, 393
BssMI	GATC	6 cut(s)	27, 37, 90, 103, 159, 552
BssNI	GRCGYC	1 cut(s)	122
BssT1I	CCWWGG	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	83, 208
BstACI	GRCGYC	1 cut(s)	122
BstBI	TTCGAA	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	360, 390
BstDEI	CTNAG	3 cut(s)	150, 174, 399
BstF5I	GGATG	2 cut(s)	382, 514
BstFNI	CGCG	3 cut(s)	26, 170, 188
BstKTI	GATC	6 cut(s)	30, 40, 93, 106, 162, 555
BstMBI	GATC	6 cut(s)	27, 37, 90, 103, 159, 552
BstMCI	CGRYCG	2 cut(s)	30, 82
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	1 cut(s)	180
BstSFI	CTRYAG	1 cut(s)	324
BstUI	CGCG	3 cut(s)	26, 170, 188
BstV1I	GCAGC	4 cut(s)	44, 85, 310, 463
Bsu15I	ATCGAT	1 cut(s)	36
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	36
BtgZI	GCGATG	2 cut(s)	79, 203
BtsCI	GGATG	2 cut(s)	382, 514
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	204, 541
BtuMI	TCGCGA	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	360, 390
Cfr13I	GGNCC	2 cut(s)	20, 545
ClaI	ATCGAT	1 cut(s)	36
CseI	GACGC	4 cut(s)	49, 130, 176, 329
CsiI	ACCWGGT	1 cut(s)	180
CviAII	CATG	3 cut(s)	277, 487, 505
DdeI	CTNAG	3 cut(s)	150, 174, 399
DpnI	GATC	6 cut(s)	29, 39, 92, 105, 161, 554
DpnII	GATC	6 cut(s)	27, 37, 90, 103, 159, 552
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	255
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	2 cut(s)	20, 545
Eco53kI	GAGCTC	1 cut(s)	226
EcoICRI	GAGCTC	1 cut(s)	226
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	255
FaeI	CATG	3 cut(s)	280, 490, 508
FaiI	YATR	8 cut(s)	132, 267, 273, 278, 408, 488, 494, 506
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	2 cut(s)	33, 531
FatI	CATG	3 cut(s)	276, 486, 504
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	5 cut(s)	58, 74, 171, 324, 477
FokI	GGATG	2 cut(s)	389, 521
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	5 cut(s)	58, 74, 171, 324, 477
GluI	GCNGC	5 cut(s)	58, 74, 171, 324, 477
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	4 cut(s)	49, 130, 176, 329
Hin1I	GRCGYC	1 cut(s)	122
Hin1II	CATG	3 cut(s)	280, 490, 508
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	3 cut(s)	33, 242, 382
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	2 cut(s)	176, 430
Hpy166II	GTNNAC	1 cut(s)	141
Hpy188I	TCNGA	4 cut(s)	32, 44, 65, 293
Hpy188III	TCNNGA	4 cut(s)	88, 187, 229, 482
Hpy8I	GTNNAC	1 cut(s)	141
Hpy99I	CGWCG	2 cut(s)	65, 124
HpyAV	CCTTC	3 cut(s)	229, 415, 425
HpyCH4III	ACNGT	2 cut(s)	83, 208
HpyCH4V	TGCA	3 cut(s)	326, 350, 441
HpyF3I	CTNAG	3 cut(s)	150, 174, 399
Hsp92I	GRCGYC	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	280, 490, 508
KflI	GGGWCCC	1 cut(s)	20
Kzo9I	GATC	6 cut(s)	27, 37, 90, 103, 159, 552
LmnI	GCTCC	3 cut(s)	223, 424, 484
LpnPI	CCDG	9 cut(s)	19, 92, 167, 194, 359, 452, 513, 528, 537
Lsp1109I	GCAGC	4 cut(s)	44, 85, 310, 463
LweI	GCATC	1 cut(s)	337
MabI	ACCWGGT	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	6 cut(s)	29, 39, 92, 105, 161, 554
MboI	GATC	6 cut(s)	27, 37, 90, 103, 159, 552
MboII	GAAGA	7 cut(s)	227, 244, 313, 346, 349, 356, 524
MfeI	CAATTG	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	8 cut(s)	10, 214, 273, 388, 394, 494, 531, 550
MroXI	GAANNNNTTC	1 cut(s)	516
MseI	TTAA	1 cut(s)	568
MslI	CAYNNNNRTG	2 cut(s)	81, 491
MspA1I	CMGCKG	1 cut(s)	57
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	3 cut(s)	26, 170, 188
NdeII	GATC	6 cut(s)	27, 37, 90, 103, 159, 552
NlaIII	CATG	3 cut(s)	280, 490, 508
NlaIV	GGNNCC	4 cut(s)	21, 22, 46, 547
NmeAIII	GCCGAG	1 cut(s)	418
NmuCI	GTSAC	1 cut(s)	164
NruI	TCGCGA	1 cut(s)	188
NspV	TTCGAA	1 cut(s)	213
OliI	CACNNNNGTG	1 cut(s)	81
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PctI	GAATGC	1 cut(s)	256
PdmI	GAANNNNTTC	1 cut(s)	516
PfeI	GAWTC	3 cut(s)	33, 242, 382
PflFI	GACNNNGTC	2 cut(s)	83, 124
PflMI	CCANNNNNTGG	1 cut(s)	369
PkrI	GCNGC	5 cut(s)	59, 75, 172, 325, 478
Ple19I	CGATCG	1 cut(s)	30
PpuMI	RGGWCCY	1 cut(s)	20
PsiI	TTATAA	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	4 cut(s)	21, 22, 46, 547
PspPI	GGNCC	2 cut(s)	20, 545
PspPPI	RGGWCCY	1 cut(s)	20
PstI	CTGCAG	1 cut(s)	328
PsyI	GACNNNGTC	2 cut(s)	83, 124
PvuI	CGATCG	1 cut(s)	30
PvuII	CAGCTG	1 cut(s)	57
RruI	TCGCGA	1 cut(s)	188
RseI	CAYNNNNRTG	2 cut(s)	81, 491
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	568
SatI	GCNGC	5 cut(s)	58, 74, 171, 324, 477
Sau3AI	GATC	6 cut(s)	27, 37, 90, 103, 159, 552
Sau96I	GGNCC	2 cut(s)	20, 545
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	8 cut(s)	59, 186, 228, 240, 318, 390, 420, 429
SexAI	ACCWGGT	1 cut(s)	180
SfaNI	GCATC	1 cut(s)	337
SfcI	CTRYAG	1 cut(s)	324
SfuI	TTCGAA	1 cut(s)	213
SinI	GGWCC	2 cut(s)	20, 545
SmiMI	CAYNNNNRTG	2 cut(s)	81, 491
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	2 cut(s)	24, 170
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	83, 208
TaqI	TCGA	4 cut(s)	36, 87, 213, 555
TasI	AATT	1 cut(s)	351
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	3 cut(s)	33, 242, 382
Tru1I	TTAA	1 cut(s)	568
Tru9I	TTAA	1 cut(s)	568
TscAI	CASTG	2 cut(s)	211, 541
TseFI	GTSAC	1 cut(s)	164
TseI	GCWGC	4 cut(s)	57, 73, 323, 476
Tsp45I	GTSAC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	206, 525
TspRI	CASTG	2 cut(s)	211, 541
Tth111I	GACNNNGTC	2 cut(s)	83, 124
Van91I	CCANNNNNTGG	1 cut(s)	369
VpaK11BI	GGWCC	2 cut(s)	20, 545
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.