Rh4BG223400
HSP70 Family

Heat shock cognate 70 kDa

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
38633482 .. 38633715
234 bp
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UTR
Exon/CDS
Intron
Rh4BG223400.1

Sequence Viewer

Length: 234 bp
ATGGAGGCTAAGTTTGCATTGGTCGACTATATGCATACAATTAAGGACATGGTTTCTTCTGATGAGCTCAAAGATTTCAGTCGAGGGCACAAGAAGAAAATTGAAGTTGCGGTTAGAAAGGTTCGTCATTGGCTTGAAGAGAATCAGGATCAACTTGCTGAATGTGAAGAATATGAGGATAAGAGGGAAAAGCTCGAAAACACTTTCAATCGAATAATTGCAGAGAATATGTAG
Functional Annotation

Protein Analysis

77

Amino Acids

9.29

Weight (kDa)

5.36

Isoelectric Point (pI)

50.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 156
AgsI TTSAA 3 cut(s) 104, 137, 208
AluBI AGCT 2 cut(s) 67, 193
AluI AGCT 2 cut(s) 67, 193
Alw21I GWGCWC 1 cut(s) 69
AlwI GGATC 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 69
BsaXI ACNNNNNCTCC 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 90
BsiHKAI GWGCWC 1 cut(s) 69
Bsp1286I GDGCHC 2 cut(s) 69, 90
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 1 cut(s) 110
BspPI GGATC 1 cut(s) 156
BssMI GATC 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 9
BstKTI GATC 1 cut(s) 151
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstSLI GKGCMC 1 cut(s) 90
CviAII CATG 1 cut(s) 49
CviJI RGCY 4 cut(s) 8, 67, 133, 193
CviKI_1 RGCY 4 cut(s) 8, 67, 133, 193
DdeI CTNAG 1 cut(s) 9
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco53kI GAGCTC 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 67
EcoT22I ATGCAT 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 1 cut(s) 52
FaiI YATR 6 cut(s) 30, 32, 36, 50, 174, 230
FatI CATG 1 cut(s) 48
FblI GTMKAC 1 cut(s) 24
FriOI GRGCYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 52
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4V TGCA 3 cut(s) 17, 34, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 1 cut(s) 9
Hsp92II CATG 1 cut(s) 52
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 1 cut(s) 131
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 4 cut(s) 48, 106, 149, 179
MhlI GDGCHC 2 cut(s) 69, 90
MluCI AATT 3 cut(s) 39, 99, 216
MnlI CCTC 3 cut(s) 77, 169, 177
Mph1103I ATGCAT 1 cut(s) 36
MseI TTAA 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeII GATC 1 cut(s) 148
NlaIII CATG 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 36
PfeI GAWTC 1 cut(s) 142
Psp124BI GAGCTC 1 cut(s) 69
SacI GAGCTC 1 cut(s) 69
SalI GTCGAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 42
Sau3AI GATC 1 cut(s) 148
SduI GDGCHC 2 cut(s) 69, 90
SetI ASST 3 cut(s) 69, 123, 195
SgeI CNNG 7 cut(s) 61, 95, 103, 146, 158, 167, 206
Sse9I AATT 3 cut(s) 39, 99, 216
SsiI CCGC 1 cut(s) 110
SstI GAGCTC 1 cut(s) 69
TaqI TCGA 4 cut(s) 24, 82, 195, 211
TasI AATT 3 cut(s) 39, 99, 216
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
XmiI GTMKAC 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.