Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003017

Physical Location & Seq

Genomic Coordinates Reverse (-)

1274940 .. 1276154

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1021100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGAAGCTCTTCAAGAGATGCTAGCGAAGGAAGGAAAAAGTCCCGATCTGTTTATTGTGTTGCAAATAATGAGGTGTTATCTACACTTAGGGGACATTGACCATGGTGTTCAAACTTTTGAAGACTATATGAAGTCAGGAAAGCCTCCTGTAGTAGAACTATATACGACGCTTGTGGAGGGAGCCATGATTGGATATGCTCCCAAGGGAATGAAAATTGCTGAAGAAACACTGGTGAATATGAATTCCCGGAGCTTTTCCTTAAGTCCAAAAATGGGGAGTGATCTTCTCCTTCAAGCTGCTGGTGACGAGACTGGAGGTTATAGTGTTGCCAACTATATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

115

Amino Acids

12.51

Weight (kDa)

4.74

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35850
fragaria_vesca	FvH4_6g51990
malus_domestica	MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1
prunus_persica	Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1
pyrus_communis	pycom111g01770 pycom17g01800
rosa_chinensis	RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191
rosa_laevigata	RLG00000022192
rosa_multiflora	Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039
rosa_roxburghii	Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510
rosa_rugosa	Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700
rosa_samantha	Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100
rosa_wichuraiana	Rw2G053290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	244
AcuI	CTGAAG	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	262
AgsI	TTSAA	4 cut(s)	14, 113, 122, 296
AluBI	AGCT	3 cut(s)	8, 255, 299
AluI	AGCT	3 cut(s)	8, 255, 299
Alw26I	GTCTC	1 cut(s)	305
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	244
Asp700I	GAANNNNTTC	1 cut(s)	9
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	2 cut(s)	247, 317
AsuNHI	GCTAGC	1 cut(s)	22
BbsI	GAAGAC	1 cut(s)	129
BbvI	GCAGC	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	23, 343
BfmI	CTRYAG	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	262
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	9
BmtI	GCTAGC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	129
BpmI	CTGGAG	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	250
BsaJI	CCNNGG	2 cut(s)	103, 204
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	2 cut(s)	237, 319
BseDI	CCNNGG	2 cut(s)	103, 204
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseNI	ACTGG	2 cut(s)	237, 319
BseXI	GCAGC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	250
BslFI	GGGAC	2 cut(s)	27, 107
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	1 cut(s)	305
BsmFI	GGGAC	2 cut(s)	27, 107
Bsp143I	GATC	2 cut(s)	46, 283
Bsp19I	CCATGG	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	26
BspQI	GCTCTTC	1 cut(s)	15
BspTI	CTTAAG	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	237, 319
BssECI	CCNNGG	2 cut(s)	103, 204
BssMI	GATC	2 cut(s)	46, 283
BssT1I	CCWWGG	2 cut(s)	103, 204
Bst6I	CTCTTC	1 cut(s)	15
BstAFI	CTTAAG	1 cut(s)	262
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	103
BstKTI	GATC	2 cut(s)	49, 286
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	2 cut(s)	46, 283
BstSCI	CCNGG	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	103
BtsIMutI	CAGTG	1 cut(s)	230
Cac8I	GCNNGC	1 cut(s)	24
CseI	GACGC	1 cut(s)	178
CviAII	CATG	2 cut(s)	104, 187
CviJI	RGCY	5 cut(s)	8, 145, 185, 255, 299
CviKI_1	RGCY	5 cut(s)	8, 145, 185, 255, 299
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	2 cut(s)	48, 285
DpnII	GATC	2 cut(s)	46, 283
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
Eco130I	CCWWGG	2 cut(s)	103, 204
Eco57I	CTGAAG	1 cut(s)	243
EcoRI	GAATTC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	103, 204
ErhI	CCWWGG	2 cut(s)	103, 204
FaeI	CATG	2 cut(s)	107, 190
FaqI	GGGAC	2 cut(s)	27, 107
FatI	CATG	2 cut(s)	103, 186
Fnu4HI	GCNGC	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	2 cut(s)	23, 343
GluI	GCNGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	336
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	107, 190
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	2 cut(s)	247, 317
Hpy188III	TCNNGA	3 cut(s)	14, 44, 138
Hpy99I	CGWCG	1 cut(s)	172
HpyAV	CCTTC	3 cut(s)	22, 26, 302
HpyCH4V	TGCA	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	88
Hsp92II	CATG	2 cut(s)	107, 190
Kzo9I	GATC	2 cut(s)	46, 283
LguI	GCTCTTC	1 cut(s)	15
LmnI	GCTCC	3 cut(s)	182, 205, 252
LpnPI	CCDG	6 cut(s)	123, 162, 218, 263, 288, 300
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	9
MaeI	CTAG	2 cut(s)	23, 343
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	2 cut(s)	48, 285
MboI	GATC	2 cut(s)	46, 283
MboII	GAAGA	3 cut(s)	134, 236, 278
MluCI	AATT	2 cut(s)	216, 244
MnlI	CCTC	4 cut(s)	66, 156, 172, 311
MroXI	GAANNNNTTC	1 cut(s)	9
MseI	TTAA	1 cut(s)	263
MspCI	CTTAAG	1 cut(s)	262
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	1 cut(s)	250
NciI	CCSGG	1 cut(s)	250
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	46, 283
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	2 cut(s)	107, 190
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	9
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	184
SapI	GCTCTTC	1 cut(s)	15
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	46, 283
ScrFI	CCNGG	1 cut(s)	250
SetI	ASST	5 cut(s)	10, 77, 257, 301, 322
SfaNI	GCATC	1 cut(s)	9
SfcI	CTRYAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
Sse9I	AATT	2 cut(s)	216, 244
SspMI	CTAG	2 cut(s)	23, 343
StyD4I	CCNGG	1 cut(s)	248
StyI	CCWWGG	2 cut(s)	103, 204
TasI	AATT	2 cut(s)	216, 244
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TscAI	CASTG	1 cut(s)	237
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	3 cut(s)	146, 227, 257
TspRI	CASTG	1 cut(s)	237
Vha464I	CTTAAG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	244
XmnI	GAANNNNTTC	1 cut(s)	9
XspI	CTAG	2 cut(s)	23, 343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.