Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028728.1

Orthogroup ID

OG0003017

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1827

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028728.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggaagctcttttggacatgctaaaaaaggatgggaaatttcctgatacctatattgtgattcaaactatgagatgctatttgaactgtggggatattgatcgtggttggcaaacggttgatgaatatctgaagtcaggaaggcctcctgtaccagaactctatacgacacttgcagagggcgccatgattggatatactcctacgggaatgcaaattgcccaaaaggcattggaagatatgaattccaggatctttttcttgctcccaagacaagggactgatcttctccttgcagctgccggtgaaaagactggaggttatactactgcaaactatatatgggacttgatgcaagctcgtaaagtaactcctcaacttcctgcagtagaagcatattacaatggcttgaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

138

Amino Acids

15.48

Weight (kDa)

5.11

Isoelectric Point (pI)

12.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35850
fragaria_vesca	FvH4_6g51990
malus_domestica	MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1
prunus_persica	Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1
pyrus_communis	pycom111g01770 pycom17g01800
rosa_chinensis	RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191
rosa_laevigata	RLG00000022192
rosa_multiflora	Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039
rosa_roxburghii	Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510
rosa_rugosa	Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700
rosa_samantha	Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100
rosa_wichuraiana	Rw2G053290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	260
AcsI	RAATTY	2 cut(s)	38, 244
AcuI	CTGAAG	1 cut(s)	152
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	65, 85, 412
AjnI	CCWGG	1 cut(s)	248
AluBI	AGCT	3 cut(s)	8, 299, 359
AluI	AGCT	3 cut(s)	8, 299, 359
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	296, 299
ApoI	RAATTY	2 cut(s)	38, 244
AspLEI	GCGC	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	317
BanI	GGYRCC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	286, 308
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	250
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	186
BglI	GCCNNNNNGGC	1 cut(s)	227
BisI	GCNGC	2 cut(s)	297, 300
BlsI	GCNGC	2 cut(s)	298, 301
Bme1390I	CCNGG	1 cut(s)	250
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	250
BmsI	GCATC	2 cut(s)	65, 342
BpmI	CTGGAG	1 cut(s)	336
BsaBI	GATNNNNATC	2 cut(s)	99, 126
BsaHI	GRCGYC	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	319
Bse8I	GATNNNNATC	2 cut(s)	99, 126
BseBI	CCWGG	1 cut(s)	250
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	2 cut(s)	99, 126
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	319
BseRI	GAGGAG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	286, 308
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	2 cut(s)	292, 359
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	2 cut(s)	292, 359
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	145
Bsp143I	GATC	3 cut(s)	100, 252, 283
BspANI	GGCC	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	184
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	182
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	302
BssMI	GATC	3 cut(s)	100, 252, 283
BssNI	GRCGYC	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	89, 118
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	37
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	3 cut(s)	103, 255, 286
BstMBI	GATC	3 cut(s)	100, 252, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 227, 392
BstNI	CCWGG	1 cut(s)	250
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	286, 308
BstX2I	RGATCY	1 cut(s)	252
BstYI	RGATCY	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	1 cut(s)	37
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	2 cut(s)	19, 187
CviJI	RGCY	5 cut(s)	8, 145, 299, 359, 408
CviKI_1	RGCY	5 cut(s)	8, 145, 299, 359, 408
CviQI	GTAC	1 cut(s)	152
DinI	GGCGCC	1 cut(s)	184
DpnI	GATC	3 cut(s)	102, 254, 285
DpnII	GATC	3 cut(s)	100, 252, 283
Eco147I	AGGCCT	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	1 cut(s)	248
EgeI	GGCGCC	1 cut(s)	184
EheI	GGCGCC	1 cut(s)	184
FaeI	CATG	2 cut(s)	22, 190
FaqI	GGGAC	2 cut(s)	292, 359
FatI	CATG	2 cut(s)	18, 186
Fnu4HI	GCNGC	2 cut(s)	297, 300
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	297, 300
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	297, 300
GsuI	CTGGAG	1 cut(s)	336
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	22, 190
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	1 cut(s)	317
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	2 cut(s)	44, 138
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	2 cut(s)	89, 118
HpyCH4V	TGCA	6 cut(s)	176, 214, 296, 332, 355, 386
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 227, 392
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	22, 190
HspAI	GCGC	1 cut(s)	183
KasI	GGCGCC	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	100, 252, 283
LmnI	GCTCC	1 cut(s)	270
LpnPI	CCDG	9 cut(s)	57, 123, 162, 168, 235, 262, 300, 316, 396
Lsp1109I	GCAGC	2 cut(s)	286, 308
LweI	GCATC	2 cut(s)	65, 342
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	3 cut(s)	102, 254, 285
MboI	GATC	3 cut(s)	100, 252, 283
MboII	GAAGA	2 cut(s)	248, 278
MflI	RGATCY	1 cut(s)	252
MluCI	AATT	3 cut(s)	38, 216, 244
Mly113I	GGCGCC	1 cut(s)	183
MnlI	CCTC	4 cut(s)	156, 172, 311, 384
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	250
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	250
MwoI	GCNNNNNNNGC	3 cut(s)	182, 227, 392
NarI	GGCGCC	1 cut(s)	183
NdeII	GATC	3 cut(s)	100, 252, 283
NlaIII	CATG	2 cut(s)	22, 190
NlaIV	GGNNCC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	145
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	61
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	2 cut(s)	298, 301
PluTI	GGCGCC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	184
PstI	CTGCAG	1 cut(s)	388
PsuI	RGATCY	1 cut(s)	252
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SatI	GCNGC	2 cut(s)	297, 300
Sau3AI	GATC	3 cut(s)	100, 252, 283
ScrFI	CCNGG	1 cut(s)	250
SetI	ASST	5 cut(s)	10, 53, 301, 322, 361
SfaNI	GCATC	2 cut(s)	65, 342
SfcI	CTRYAG	1 cut(s)	384
SfoI	GGCGCC	1 cut(s)	184
Sse9I	AATT	3 cut(s)	38, 216, 244
SseBI	AGGCCT	1 cut(s)	145
SspDI	GGCGCC	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	248
TaaI	ACNGT	2 cut(s)	89, 118
TasI	AATT	3 cut(s)	38, 216, 244
TfiI	GAWTC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	296, 299
TspDTI	ATGAA	2 cut(s)	138, 257
XapI	RAATTY	2 cut(s)	38, 244
XceI	RCATGY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.