Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003017

Physical Location & Seq

Genomic Coordinates Forward (+)

21579540 .. 21581231

Gene Structure 1692 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG228100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGAGCATGCCGAACTACATATCAGTCACCAACCAATGGAATCTTTTCTGGTTTTCTGTTTTTGATTGGGTTCTGCAATTCTTAAAGGTGATGGAAGCTCTTTTGGACATGCTAAAGGATGGAAAATATCTTGATACCTATATTGTGATTCAAACTATGAGATGCTATTTGAACTGTGATGATATTGATCGTGGTGTGCAAACCCCTGATGACTATCTGAAGTTAGGGAAGCTTCCTGCACCAGAACTCATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

85

Amino Acids

10.05

Weight (kDa)

4.39

Isoelectric Point (pI)

17.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35850
fragaria_vesca	FvH4_6g51990
malus_domestica	MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1
prunus_persica	Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1
pyrus_communis	pycom111g01770 pycom17g01800
rosa_chinensis	RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191
rosa_laevigata	RLG00000022192
rosa_multiflora	Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039
rosa_roxburghii	Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510
rosa_rugosa	Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700
rosa_samantha	Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100
rosa_wichuraiana	Rw2G053290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	36
AcuI	CTGAAG	1 cut(s)	239
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	152, 172
AluBI	AGCT	2 cut(s)	98, 232
AluI	AGCT	2 cut(s)	98, 232
Asp700I	GAANNNNTTC	1 cut(s)	44
AsuHPI	GGTGA	2 cut(s)	19, 100
BccI	CCATC	2 cut(s)	85, 113
BmsI	GCATC	1 cut(s)	152
BsaBI	GATNNNNATC	2 cut(s)	186, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse8I	GATNNNNATC	2 cut(s)	186, 213
BseGI	GGATG	1 cut(s)	124
BseJI	GATNNNNATC	2 cut(s)	186, 213
BseLI	CCNNNNNNNGG	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	187
BssMI	GATC	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstNSI	RCATGY	2 cut(s)	10, 112
BtsCI	GGATG	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	8
CviAII	CATG	2 cut(s)	7, 109
CviJI	RGCY	2 cut(s)	98, 232
CviKI_1	RGCY	2 cut(s)	98, 232
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco57I	CTGAAG	1 cut(s)	239
FaeI	CATG	2 cut(s)	10, 112
FaiI	YATR	7 cut(s)	8, 20, 110, 141, 158, 251, 256
FatI	CATG	2 cut(s)	6, 108
FokI	GGATG	1 cut(s)	131
Hin1II	CATG	2 cut(s)	10, 112
HindIII	AAGCTT	1 cut(s)	230
HinfI	GANTC	2 cut(s)	40, 148
HphI	GGTGA	2 cut(s)	19, 100
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	176
HpyCH4V	TGCA	3 cut(s)	76, 199, 239
Hsp92II	CATG	2 cut(s)	10, 112
Kzo9I	GATC	1 cut(s)	187
LpnPI	CCDG	3 cut(s)	34, 219, 249
LweI	GCATC	1 cut(s)	152
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MluCI	AATT	1 cut(s)	77
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	1 cut(s)	83
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	10, 112
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	2 cut(s)	10, 112
PaeI	GCATGC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	40, 148
PflMI	CCANNNNNTGG	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	83
Sau3AI	GATC	1 cut(s)	187
SetI	ASST	4 cut(s)	90, 100, 140, 234
SfaNI	GCATC	1 cut(s)	152
SgeI	CNNG	8 cut(s)	19, 61, 121, 143, 203, 218, 248, 254
SphI	GCATGC	1 cut(s)	10
Sse9I	AATT	1 cut(s)	77
TaaI	ACNGT	1 cut(s)	176
TasI	AATT	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	40, 148
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	25
Tsp45I	GTSAC	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	36
XceI	RCATGY	2 cut(s)	10, 112
XmnI	GAANNNNTTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.