Pentatricopeptide repeat-containing protein At4g35850
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G35850 |
| fragaria_vesca | FvH4_6g51990 |
| malus_domestica | MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1 |
| prunus_persica | Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1 |
| pyrus_communis | pycom111g01770 pycom17g01800 |
| rosa_chinensis | RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191 |
| rosa_laevigata | RLG00000022192 |
| rosa_multiflora | Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039 |
| rosa_roxburghii | Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510 |
| rosa_rugosa | Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700 |
| rosa_samantha | Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100 |
| rosa_wichuraiana | Rw2G053290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 76, 86, 99 |
| AjnI | CCWGG | 1 cut(s) | 121 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 132, 164 |
| AluBI | AGCT | 1 cut(s) | 19 |
| AluI | AGCT | 1 cut(s) | 19 |
| Alw26I | GTCTC | 1 cut(s) | 17 |
| AlwI | GGATC | 3 cut(s) | 76, 86, 99 |
| ApeKI | GCWGC | 2 cut(s) | 16, 165 |
| AsuC2I | CCSGG | 1 cut(s) | 162 |
| AxyI | CCTNAGG | 1 cut(s) | 87 |
| BamHI | GGATCC | 1 cut(s) | 91 |
| BauI | CACGAG | 1 cut(s) | 32 |
| BbvI | GCAGC | 2 cut(s) | 28, 152 |
| BccI | CCATC | 1 cut(s) | 191 |
| BceAI | ACGGC | 1 cut(s) | 144 |
| BciT130I | CCWGG | 1 cut(s) | 123 |
| BcnI | CCSGG | 1 cut(s) | 162 |
| BcoDI | GTCTC | 1 cut(s) | 17 |
| BfmI | CTRYAG | 1 cut(s) | 46 |
| BglII | AGATCT | 1 cut(s) | 28 |
| BisI | GCNGC | 2 cut(s) | 17, 166 |
| BlsI | GCNGC | 2 cut(s) | 18, 167 |
| Bme1390I | CCNGG | 2 cut(s) | 123, 162 |
| BmiI | GGNNCC | 2 cut(s) | 93, 116 |
| BmrFI | CCNGG | 2 cut(s) | 123, 162 |
| BpmI | CTGGAG | 2 cut(s) | 41, 127 |
| BpuMI | CCSGG | 1 cut(s) | 162 |
| Bse21I | CCTNAGG | 1 cut(s) | 87 |
| BseBI | CCWGG | 1 cut(s) | 123 |
| BseGI | GGATG | 1 cut(s) | 183 |
| BseMII | CTCAG | 1 cut(s) | 78 |
| BseXI | GCAGC | 2 cut(s) | 28, 152 |
| BseYI | CCCAGC | 1 cut(s) | 199 |
| BsiSI | CCGG | 1 cut(s) | 162 |
| BsmAI | GTCTC | 1 cut(s) | 17 |
| Bsp143I | GATC | 4 cut(s) | 28, 81, 91, 102 |
| BspCNI | CTCAG | 1 cut(s) | 79 |
| BspLI | GGNNCC | 2 cut(s) | 93, 116 |
| BspPI | GGATC | 3 cut(s) | 76, 86, 99 |
| BssMI | GATC | 4 cut(s) | 28, 81, 91, 102 |
| BssSI | CACGAG | 1 cut(s) | 32 |
| Bst2BI | CACGAG | 1 cut(s) | 32 |
| Bst2UI | CCWGG | 1 cut(s) | 123 |
| Bst4CI | ACNGT | 1 cut(s) | 12 |
| BstDEI | CTNAG | 1 cut(s) | 87 |
| BstF5I | GGATG | 1 cut(s) | 183 |
| BstKTI | GATC | 4 cut(s) | 31, 84, 94, 105 |
| BstMAI | GTCTC | 1 cut(s) | 17 |
| BstMBI | GATC | 4 cut(s) | 28, 81, 91, 102 |
| BstNI | CCWGG | 1 cut(s) | 123 |
| BstSCI | CCNGG | 2 cut(s) | 121, 160 |
| BstSFI | CTRYAG | 1 cut(s) | 46 |
| BstV1I | GCAGC | 2 cut(s) | 28, 152 |
| BstX2I | RGATCY | 3 cut(s) | 28, 81, 91 |
| BstYI | RGATCY | 3 cut(s) | 28, 81, 91 |
| Bsu36I | CCTNAGG | 1 cut(s) | 87 |
| BtsCI | GGATG | 1 cut(s) | 183 |
| CviJI | RGCY | 3 cut(s) | 19, 131, 165 |
| CviKI_1 | RGCY | 3 cut(s) | 19, 131, 165 |
| DdeI | CTNAG | 1 cut(s) | 87 |
| DpnI | GATC | 4 cut(s) | 30, 83, 93, 104 |
| DpnII | GATC | 4 cut(s) | 28, 81, 91, 102 |
| Eco81I | CCTNAGG | 1 cut(s) | 87 |
| EcoRII | CCWGG | 1 cut(s) | 121 |
| FaiI | YATR | 1 cut(s) | 8 |
| Fnu4HI | GCNGC | 2 cut(s) | 17, 166 |
| FokI | GGATG | 1 cut(s) | 170 |
| Fsp4HI | GCNGC | 2 cut(s) | 17, 166 |
| GluI | GCNGC | 2 cut(s) | 17, 166 |
| GsaI | CCCAGC | 1 cut(s) | 203 |
| GsuI | CTGGAG | 2 cut(s) | 41, 127 |
| HapII | CCGG | 1 cut(s) | 162 |
| HinfI | GANTC | 1 cut(s) | 37 |
| HpaII | CCGG | 1 cut(s) | 162 |
| Hpy188III | TCNNGA | 2 cut(s) | 34, 106 |
| HpyCH4III | ACNGT | 1 cut(s) | 12 |
| HpyCH4V | TGCA | 1 cut(s) | 16 |
| HpyF3I | CTNAG | 1 cut(s) | 87 |
| Kzo9I | GATC | 4 cut(s) | 28, 81, 91, 102 |
| LpnPI | CCDG | 8 cut(s) | 5, 91, 99, 108, 135, 150, 175, 185 |
| Lsp1109I | GCAGC | 2 cut(s) | 28, 152 |
| MalI | GATC | 4 cut(s) | 30, 83, 93, 104 |
| MboI | GATC | 4 cut(s) | 28, 81, 91, 102 |
| MflI | RGATCY | 3 cut(s) | 28, 81, 91 |
| MnlI | CCTC | 3 cut(s) | 82, 190, 197 |
| MseI | TTAA | 1 cut(s) | 60 |
| MspA1I | CMGCKG | 1 cut(s) | 19 |
| MspI | CCGG | 1 cut(s) | 162 |
| MspR9I | CCNGG | 2 cut(s) | 123, 162 |
| MvaI | CCWGG | 1 cut(s) | 123 |
| NciI | CCSGG | 1 cut(s) | 162 |
| NdeII | GATC | 4 cut(s) | 28, 81, 91, 102 |
| NlaIV | GGNNCC | 2 cut(s) | 93, 116 |
| PfeI | GAWTC | 1 cut(s) | 37 |
| PkrI | GCNGC | 2 cut(s) | 18, 167 |
| Psp6I | CCWGG | 1 cut(s) | 121 |
| PspFI | CCCAGC | 1 cut(s) | 199 |
| PspGI | CCWGG | 1 cut(s) | 121 |
| PspN4I | GGNNCC | 2 cut(s) | 93, 116 |
| PsuI | RGATCY | 3 cut(s) | 28, 81, 91 |
| PvuII | CAGCTG | 1 cut(s) | 19 |
| SaqAI | TTAA | 1 cut(s) | 60 |
| SatI | GCNGC | 2 cut(s) | 17, 166 |
| Sau3AI | GATC | 4 cut(s) | 28, 81, 91, 102 |
| ScrFI | CCNGG | 2 cut(s) | 123, 162 |
| SetI | ASST | 2 cut(s) | 21, 124 |
| SfcI | CTRYAG | 1 cut(s) | 46 |
| StyD4I | CCNGG | 2 cut(s) | 121, 160 |
| TaaI | ACNGT | 1 cut(s) | 12 |
| TaqI | TCGA | 1 cut(s) | 189 |
| TfiI | GAWTC | 1 cut(s) | 37 |
| Tru1I | TTAA | 1 cut(s) | 60 |
| Tru9I | TTAA | 1 cut(s) | 60 |
| TseI | GCWGC | 2 cut(s) | 16, 165 |