Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000580.1

Orthogroup ID

OG0003017

Physical Location & Seq

Genomic Coordinates Reverse (-)

499982 .. 502247

Gene Structure 2266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000580.1_g000120.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atgttttctgctgtttctggacttgagttttctatgtccgaaaagtatcaaaaatgtggactgccgacttttattgatgttgggaatagctttggtgctcttgcaattgttgaagataatttgttacatcaggttgctctctctctctctcttgtgttctgtcttcacttgtatagatattttgtttttcaagctatagaaaggcaaggctatggaacggttgatgaatatctgaagtcaggaaggcctcctgtaccagaactctatacgacacttgcagagggcgccatgattggatatactcctaagggaatgcaaattgcccaaaagtcattggaagatatgaattccaggaacttttacttgctcccaagacaagggactgatcttctccttgcagctgccggtgaaaagactggaggttatactactgcaaactatatatgggacttgatgcaagctcgtaaagtaactcctcaacttcctgcagtagaagcatattacaatggcttgaaaggcagcagcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

176

Amino Acids

19.49

Weight (kDa)

6.11

Isoelectric Point (pI)

22.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35850
fragaria_vesca	FvH4_6g51990
malus_domestica	MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1
prunus_persica	Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1
pyrus_communis	pycom111g01770 pycom17g01800
rosa_chinensis	RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191
rosa_laevigata	RLG00000022192
rosa_multiflora	Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039
rosa_roxburghii	Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510
rosa_rugosa	Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700
rosa_samantha	Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100
rosa_wichuraiana	Rw2G053290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	3 cut(s)	113, 191, 514
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	4 cut(s)	90, 194, 401, 461
AluI	AGCT	4 cut(s)	90, 194, 401, 461
Alw21I	GWGCWC	1 cut(s)	100
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	4 cut(s)	398, 401, 519, 522
ApoI	RAATTY	1 cut(s)	346
AspLEI	GCGC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	388, 410
BciT130I	CCWGG	1 cut(s)	352
BfmI	CTRYAG	2 cut(s)	195, 486
BfoI	RGCGCY	1 cut(s)	288
BisI	GCNGC	4 cut(s)	399, 402, 520, 523
BlsI	GCNGC	4 cut(s)	400, 403, 521, 524
Bme1390I	CCNGG	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	421
Bse21I	CCTNAGG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	388, 410
BshFI	GGCC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	100
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	2 cut(s)	394, 461
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmFI	GGGAC	2 cut(s)	394, 461
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	1 cut(s)	385
BspANI	GGCC	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	404
BssMI	GATC	1 cut(s)	385
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	220
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	1 cut(s)	306
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	388
BstMBI	GATC	1 cut(s)	385
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 494, 516
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstSFI	CTRYAG	2 cut(s)	195, 486
BstV1I	GCAGC	2 cut(s)	388, 410
BstV2I	GAAGAC	1 cut(s)	155
Bsu36I	CCTNAGG	1 cut(s)	306
BsuRI	GGCC	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	459
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	404
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	7 cut(s)	90, 194, 210, 247, 401, 461, 510
CviKI_1	RGCY	7 cut(s)	90, 194, 210, 247, 401, 461, 510
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	1 cut(s)	306
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	1 cut(s)	387
DpnII	GATC	1 cut(s)	385
Eco147I	AGGCCT	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	254
Eco81I	CCTNAGG	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
FaeI	CATG	1 cut(s)	292
FaqI	GGGAC	2 cut(s)	394, 461
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	4 cut(s)	399, 402, 520, 523
Fsp4HI	GCNGC	4 cut(s)	399, 402, 520, 523
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	4 cut(s)	399, 402, 520, 523
GsuI	CTGGAG	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	247
HapII	CCGG	1 cut(s)	405
HhaI	GCGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	40, 234
Hpy188III	TCNNGA	2 cut(s)	18, 240
Hpy8I	GTNNAC	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	7 cut(s)	104, 278, 316, 398, 434, 457, 488
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 494, 516
HpyF3I	CTNAG	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	285
KasI	GGCGCC	1 cut(s)	284
Kzo9I	GATC	1 cut(s)	385
LmnI	GCTCC	1 cut(s)	372
Lsp1109I	GCAGC	2 cut(s)	388, 410
LweI	GCATC	1 cut(s)	444
MaeIII	GTNAC	2 cut(s)	123, 469
MalI	GATC	1 cut(s)	387
MboI	GATC	1 cut(s)	385
MboII	GAAGA	4 cut(s)	125, 155, 350, 380
MfeI	CAATTG	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	4 cut(s)	105, 118, 318, 346
Mly113I	GGCGCC	1 cut(s)	285
MnlI	CCTC	4 cut(s)	258, 274, 413, 486
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	352
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	352
MwoI	GCNNNNNNNGC	3 cut(s)	284, 494, 516
NarI	GGCGCC	1 cut(s)	285
NdeII	GATC	1 cut(s)	385
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	286
PceI	AGGCCT	1 cut(s)	247
PctI	GAATGC	1 cut(s)	318
PfoI	TCCNGGA	1 cut(s)	350
PkrI	GCNGC	4 cut(s)	400, 403, 521, 524
PluTI	GGCGCC	1 cut(s)	288
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	286
PstI	CTGCAG	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
SatI	GCNGC	4 cut(s)	399, 402, 520, 523
Sau3AI	GATC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	6 cut(s)	92, 135, 196, 403, 424, 463
SfaNI	GCATC	1 cut(s)	444
SfcI	CTRYAG	2 cut(s)	195, 486
SfoI	GGCGCC	1 cut(s)	286
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	4 cut(s)	105, 118, 318, 346
SseBI	AGGCCT	1 cut(s)	247
SspDI	GGCGCC	1 cut(s)	284
StuI	AGGCCT	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	220
TasI	AATT	4 cut(s)	105, 118, 318, 346
TseI	GCWGC	4 cut(s)	398, 401, 519, 522
TspDTI	ATGAA	2 cut(s)	240, 359
XapI	RAATTY	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.