Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003017

Physical Location & Seq

Genomic Coordinates Forward (+)

2431240 .. 2433842

Gene Structure 2603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG014600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGACTGGAGAGGACTACTGGCCTTCTCTGAATCCACTATATTTCACCGGCAACGCCTTGTCGTTCAGCCCAAACTGGTGGAGCCTGGACGACGATTGGCACGGAATAAATCTGTTGCTATACATCGAGGTCTTCGACAGTGACGATGAGAGGCTCGAGATTCCCCAGAACAAGTCGAAACGCAGATGGCTAGACTCAACCCCTGTCTCAACGCAAGAAGAATTAGGAATTAAGGTAACCGCCTCGGCGCCTCCGTCACGCTGCTGCTGCTTCTCAAGGTCAGGACGCTCGGATTTGGTATGGATTTCGAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

105

Amino Acids

12.1

Weight (kDa)

4.67

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35850
fragaria_vesca	FvH4_6g51990
malus_domestica	MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1
prunus_persica	Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1
pyrus_communis	pycom111g01770 pycom17g01800
rosa_chinensis	RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191
rosa_laevigata	RLG00000022192
rosa_multiflora	Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039
rosa_roxburghii	Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510
rosa_rugosa	Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700
rosa_samantha	Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100
rosa_wichuraiana	Rw2G053290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	247
AciI	CCGC	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	84
Alw26I	GTCTC	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	3 cut(s)	261, 264, 267
AspLEI	GCGC	1 cut(s)	250
AsuHPI	GGTGA	1 cut(s)	37
AsuII	TTCGAA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	155
BanI	GGYRCC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	124
BbvI	GCAGC	3 cut(s)	248, 251, 254
BccI	CCATC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	86
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	191
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	3 cut(s)	262, 265, 268
BlsI	GCNGC	3 cut(s)	263, 266, 269
Bme1390I	CCNGG	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	83, 249
BmrFI	CCNGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	27
Bpu14I	TTCGAA	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	259
BsaHI	GRCGYC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	243
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	3 cut(s)	10, 23, 80
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	1 cut(s)	243
BseNI	ACTGG	3 cut(s)	10, 23, 80
BseXI	GCAGC	3 cut(s)	248, 251, 254
BshFI	GGCC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	247
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	308
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	83, 249
BspT104I	TTCGAA	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	3 cut(s)	10, 23, 80
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	243
BssNI	GRCGYC	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	1 cut(s)	140
BstACI	GRCGYC	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	308
BstEII	GGTNACC	1 cut(s)	235
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstMAI	GTCTC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstNI	CCWGG	1 cut(s)	86
BstPI	GGTNACC	1 cut(s)	235
BstSCI	CCNGG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	248, 251, 254
BstV2I	GAAGAC	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	145
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	47
CseI	GACGC	1 cut(s)	294
CviJI	RGCY	5 cut(s)	22, 69, 84, 154, 190
CviKI_1	RGCY	5 cut(s)	22, 69, 84, 154, 190
DinI	GGCGCC	1 cut(s)	249
Eco88I	CYCGRG	1 cut(s)	155
Eco91I	GGTNACC	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	84
EgeI	GGCGCC	1 cut(s)	249
EheI	GGCGCC	1 cut(s)	249
FaiI	YATR	3 cut(s)	40, 121, 301
Fnu4HI	GCNGC	3 cut(s)	262, 265, 268
Fsp4HI	GCNGC	3 cut(s)	262, 265, 268
FspBI	CTAG	1 cut(s)	191
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	3 cut(s)	262, 265, 268
GsuI	CTGGAG	1 cut(s)	27
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	48
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	1 cut(s)	250
Hin1I	GRCGYC	1 cut(s)	248
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HinfI	GANTC	3 cut(s)	31, 160, 194
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	2 cut(s)	30, 292
Hpy188III	TCNNGA	2 cut(s)	157, 282
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	33
HpyCH4III	ACNGT	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
Hsp92I	GRCGYC	1 cut(s)	248
HspAI	GCGC	1 cut(s)	248
KasI	GGCGCC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	81
LpnPI	CCDG	8 cut(s)	4, 61, 61, 71, 98, 179, 216, 267
Lsp1109I	GCAGC	3 cut(s)	248, 251, 254
MaeI	CTAG	1 cut(s)	191
MaeIII	GTNAC	3 cut(s)	140, 235, 255
MboII	GAAGA	2 cut(s)	124, 230
MluCI	AATT	3 cut(s)	221, 228, 313
Mly113I	GGCGCC	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	5 cut(s)	4, 121, 144, 253, 261
MseI	TTAA	1 cut(s)	231
MspI	CCGG	1 cut(s)	48
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MwoI	GCNNNNNNNGC	1 cut(s)	267
NarI	GGCGCC	1 cut(s)	248
NlaIV	GGNNCC	2 cut(s)	83, 249
NmeAIII	GCCGAG	1 cut(s)	224
NmuCI	GTSAC	2 cut(s)	140, 255
NspV	TTCGAA	1 cut(s)	308
PaeR7I	CTCGAG	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 141, 251
PfeI	GAWTC	2 cut(s)	31, 160
PkrI	GCNGC	3 cut(s)	263, 266, 269
PleI	GAGTC	1 cut(s)	188
PluTI	GGCGCC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	84
PspEI	GGTNACC	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	2 cut(s)	83, 249
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	3 cut(s)	262, 265, 268
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	86
SetI	ASST	3 cut(s)	132, 237, 281
SfoI	GGCGCC	1 cut(s)	249
Sfr274I	CTCGAG	1 cut(s)	155
SfuI	TTCGAA	1 cut(s)	308
SlaI	CTCGAG	1 cut(s)	155
SmlI	CTYRAG	2 cut(s)	155, 274
SmoI	CTYRAG	2 cut(s)	155, 274
Sse9I	AATT	3 cut(s)	221, 228, 313
SsiI	CCGC	1 cut(s)	240
SspDI	GGCGCC	1 cut(s)	247
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	5 cut(s)	126, 135, 156, 176, 308
TasI	AATT	3 cut(s)	221, 228, 313
TfiI	GAWTC	2 cut(s)	31, 160
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	2 cut(s)	140, 255
TseI	GCWGC	3 cut(s)	261, 264, 267
Tsp45I	GTSAC	2 cut(s)	140, 255
TspGWI	ACGGA	2 cut(s)	117, 243
TspRI	CASTG	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	155
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.