Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000467.1

Orthogroup ID

OG0003017

Physical Location & Seq

Genomic Coordinates Forward (+)

136892 .. 139162

Gene Structure 2271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000467.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgttttctgctgtttctggacttgagttttctatgtccgaaaagtatcaaaaatgtggactgccgacttttattgatgttgggaatagctttggtgctcttgcaattgttgaagataatttgttacatcaggttgctctctctctctctcttgtgttctgtcttcacttgtatagatattttgtttttcaagctatagaaaggcaaggctatggaacggttgatgaatatctgaagtcaggaaggcctcctgtaccagaactctatacgacacttgcagagggcgccatgattggatatactcctaagggaatgcaaattgcccaaaagtcattggaagatatgaattccaggaacttttacttgctcccaagacaagggactgatcttctccttgcagctgccggtgaaaagactggaggttatactactgcaaactatatatgggacttgatgcaagctcgtaaagtaactcctcaacttcctgcagtagaagcatattacaatggcttgaaagaacgcgagattcctgctgatgatccacgactagtactcgagtcggtgttgtggatacttgtatgttttacatacatttcaaggccatcgtggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

203

Amino Acids

22.82

Weight (kDa)

5.24

Isoelectric Point (pI)

27.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35850
fragaria_vesca	FvH4_6g51990
malus_domestica	MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1
prunus_persica	Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1
pyrus_communis	pycom111g01770 pycom17g01800
rosa_chinensis	RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191
rosa_laevigata	RLG00000022192
rosa_multiflora	Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039
rosa_roxburghii	Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510
rosa_rugosa	Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700
rosa_samantha	Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100
rosa_wichuraiana	Rw2G053290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccII	CGCG	1 cut(s)	522
AclWI	GGATC	1 cut(s)	533
AcsI	RAATTY	1 cut(s)	346
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	2 cut(s)	255, 552
AfiI	CCNNNNNNNGG	1 cut(s)	377
AgsI	TTSAA	4 cut(s)	113, 191, 514, 597
AhlI	ACTAGT	1 cut(s)	547
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	4 cut(s)	90, 194, 401, 461
AluI	AGCT	4 cut(s)	90, 194, 401, 461
Alw21I	GWGCWC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	554
AoxI	GGCC	2 cut(s)	245, 599
ApeKI	GCWGC	2 cut(s)	398, 401
ApoI	RAATTY	1 cut(s)	346
AspLEI	GCGC	1 cut(s)	287
AsuHPI	GGTGA	1 cut(s)	419
AvaI	CYCGRG	1 cut(s)	554
AxyI	CCTNAGG	1 cut(s)	306
BanI	GGYRCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	2 cut(s)	388, 410
BccI	CCATC	1 cut(s)	610
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciT130I	CCWGG	1 cut(s)	352
BciVI	GTATCC	1 cut(s)	564
BcuI	ACTAGT	1 cut(s)	547
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	2 cut(s)	195, 486
BfoI	RGCGCY	1 cut(s)	288
BfuI	GTATCC	1 cut(s)	564
BisI	GCNGC	2 cut(s)	399, 402
BlsI	GCNGC	2 cut(s)	400, 403
BmcAI	AGTACT	1 cut(s)	552
Bme1390I	CCNGG	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	554
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	444
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	438
BpuEI	CTTGAG	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	1 cut(s)	421
Bse21I	CCTNAGG	1 cut(s)	306
Bse8I	GATNNNNATC	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	388, 410
Bsh1236I	CGCG	1 cut(s)	522
BshFI	GGCC	2 cut(s)	247, 601
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	554
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	2 cut(s)	394, 461
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmFI	GGGAC	2 cut(s)	394, 461
BsmI	GAATGC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	247, 601
BsoBI	CYCGRG	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp143I	GATC	2 cut(s)	385, 538
BspANI	GGCC	2 cut(s)	247, 601
BspFNI	CGCG	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	286
BspMAI	CTGCAG	1 cut(s)	490
BspPI	GGATC	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	404
BssMI	GATC	2 cut(s)	385, 538
BssNI	GRCGYC	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	220
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	1 cut(s)	306
BstFNI	CGCG	1 cut(s)	522
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	2 cut(s)	388, 541
BstMBI	GATC	2 cut(s)	385, 538
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 494
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstSFI	CTRYAG	2 cut(s)	195, 486
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	2 cut(s)	388, 410
BstV2I	GAAGAC	1 cut(s)	155
Bsu36I	CCTNAGG	1 cut(s)	306
BsuI	GTATCC	1 cut(s)	564
BsuRI	GGCC	2 cut(s)	247, 601
Cac8I	GCNNGC	1 cut(s)	459
CfoI	GCGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	254, 551
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	8 cut(s)	90, 194, 210, 247, 401, 461, 510, 601
CviKI_1	RGCY	8 cut(s)	90, 194, 210, 247, 401, 461, 510, 601
CviQI	GTAC	2 cut(s)	254, 551
DdeI	CTNAG	1 cut(s)	306
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	2 cut(s)	387, 540
DpnII	GATC	2 cut(s)	385, 538
Eco147I	AGGCCT	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	254
Eco81I	CCTNAGG	1 cut(s)	306
Eco88I	CYCGRG	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	350
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
FaeI	CATG	1 cut(s)	292
FaqI	GGGAC	2 cut(s)	394, 461
FatI	CATG	1 cut(s)	288
Fnu4HI	GCNGC	2 cut(s)	399, 402
Fsp4HI	GCNGC	2 cut(s)	399, 402
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	2 cut(s)	399, 402
GsuI	CTGGAG	1 cut(s)	438
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	2 cut(s)	247, 601
HapII	CCGG	1 cut(s)	405
HhaI	GCGC	1 cut(s)	287
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HinfI	GANTC	2 cut(s)	526, 557
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	419
Hpy166II	GTNNAC	1 cut(s)	59
Hpy188I	TCNGA	2 cut(s)	40, 234
Hpy188III	TCNNGA	2 cut(s)	18, 240
Hpy8I	GTNNAC	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	237
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4V	TGCA	7 cut(s)	104, 278, 316, 398, 434, 457, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 494
HpyF3I	CTNAG	1 cut(s)	306
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	1 cut(s)	292
HspAI	GCGC	1 cut(s)	285
KasI	GGCGCC	1 cut(s)	284
Kzo9I	GATC	2 cut(s)	385, 538
LmnI	GCTCC	1 cut(s)	372
Lsp1109I	GCAGC	2 cut(s)	388, 410
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	1 cut(s)	548
MaeIII	GTNAC	2 cut(s)	123, 469
MalI	GATC	2 cut(s)	387, 540
MboI	GATC	2 cut(s)	385, 538
MboII	GAAGA	4 cut(s)	125, 155, 350, 380
MfeI	CAATTG	1 cut(s)	105
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	4 cut(s)	105, 118, 318, 346
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	1 cut(s)	566
MnlI	CCTC	4 cut(s)	258, 274, 413, 486
MslI	CAYNNNNRTG	1 cut(s)	607
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	1 cut(s)	352
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	318
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	1 cut(s)	522
MwoI	GCNNNNNNNGC	2 cut(s)	284, 494
NarI	GGCGCC	1 cut(s)	285
NdeII	GATC	2 cut(s)	385, 538
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	554
PceI	AGGCCT	1 cut(s)	247
PctI	GAATGC	1 cut(s)	318
PfeI	GAWTC	1 cut(s)	526
PfoI	TCCNGGA	1 cut(s)	350
PkrI	GCNGC	2 cut(s)	400, 403
PleI	GAGTC	1 cut(s)	565
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	565
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	286
PspXI	VCTCGAGB	1 cut(s)	554
PstI	CTGCAG	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	401
RsaI	GTAC	2 cut(s)	255, 552
RsaNI	GTAC	2 cut(s)	254, 551
RseI	CAYNNNNRTG	1 cut(s)	607
SatI	GCNGC	2 cut(s)	399, 402
Sau3AI	GATC	2 cut(s)	385, 538
ScaI	AGTACT	1 cut(s)	552
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	6 cut(s)	92, 135, 196, 403, 424, 463
SfaNI	GCATC	1 cut(s)	444
SfcI	CTRYAG	2 cut(s)	195, 486
SfoI	GGCGCC	1 cut(s)	286
Sfr274I	CTCGAG	1 cut(s)	554
SlaI	CTCGAG	1 cut(s)	554
SmiMI	CAYNNNNRTG	1 cut(s)	607
SmlI	CTYRAG	2 cut(s)	23, 554
SmoI	CTYRAG	2 cut(s)	23, 554
SpeI	ACTAGT	1 cut(s)	547
Sse9I	AATT	4 cut(s)	105, 118, 318, 346
SseBI	AGGCCT	1 cut(s)	247
SspDI	GGCGCC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	548
StuI	AGGCCT	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	220
TaqI	TCGA	1 cut(s)	555
TasI	AATT	4 cut(s)	105, 118, 318, 346
TatI	WGTACW	1 cut(s)	550
TfiI	GAWTC	1 cut(s)	526
TseI	GCWGC	2 cut(s)	398, 401
TspDTI	ATGAA	2 cut(s)	240, 359
XapI	RAATTY	1 cut(s)	346
XhoI	CTCGAG	1 cut(s)	554
XspI	CTAG	1 cut(s)	548
ZrmI	AGTACT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.