Prupe.3G295200_v2.0.a1

Pentatricopeptide repeat-containing protein At4g35850

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
26294012 .. 26297631
3620 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G295200.1

Sequence Viewer

Length: 1335 bp
ATGAGGCTTCTCCAATCCATTACTGGTCAGTGTAGGCCGGTGCTGCTGCGAGCGCTGGGTCGGCGATACTTGGCTGCGGCGTCAACAGAAGAATACGCGAAGAGAAACTACGCGAGCAACGTGTCGGAGTACAATACGGTCTTGAATTCTCTGAATGCTCAGAGAAGGCATTTCTTACTGAGGGATGTGTATGATGATATGATGCTCGATGGGGTGCAGCCGGACCAGGACACCTTCAAATCCCTAATATTGGGCACCATGAAAGGCTCTAGCTTGCAGGACGCTTTCTACTTCGCTGATCAAATGAAAAACATGGGCTTGGCCCCTGATGTTAATTCGTATAACATTTTGATCACATTGTGTGGGAAGTGCAAGCACTCTGACAAAGCTATTCAGATTTTGGAAGATATGAAGAAGTTTGACGTGAAACCGAAGGTGCAAACTTACATGTGTCTACTCAACGCATGTGCAGCTACTGGCCATTTAGATCGAGTGTATGCAATTGTCCGTGACATGACCGCTGCTGGTCTTGGATTAAACAAGTTCTGCTATGCAGCACTTATAACCGCACTTAGGAACAAGACACCCTTACCAGATGATTTTGGCACCAAAATTATAGAGTTTGTTGAAAGGTCAAAAGAGTGGACATCGGTTGAAGAATCAAGTATGACTGCTGAAAATGTAATGATGGATATAACAGAAGAAGAGTTATATAATATGCCCACTGCTGAATATGCTCGTAGGCGTGGATTTTTGAATAGGCAACTAACCGTGTATCATGCTGCGCTTCATGCTTGTGCAGACCTCAGGAATGTAGAGGTGATGGAAGCTCTTTTGGGGATGCTAGAGAAAGATGGAAAAACTCCTGACCTCTTTATTGTGATGCAAAAGATGAGGTGCTATCTACAGTCTGGGGACATTGACCGTGGTCTTAAGACGTTTGACGACTATATGAAGTCAGGAAATCTTCCCGCAGTAGAATTATATACGATGCTTGTGGAGGGAGCCATGATTGGGCATACACCCAAGGGAATGCAAATTGCCCAAGAAACATTGGTAAATATGACTTCCCGGAACTTTTATTTGAGCCCAAAAATGGGGAGTGATCTTCTCCTTGCAGCTGCTGGTGATGAGACTGGAGGTTATACTGTTGCCAACTATATATGGGACTTGATGCAAGCTCGTAATATAATTCCCCAATTTCCTGCTGTAGAAGCATATTACAAGGGCTTAAAAAAACGTGAGATTCCCGGCGATGATCCACGACTGTTAGTGGTTACGCGGACTTATGATGACCTTCTCGCGAGAAGGGGACCCAGACGACCTTCCAGATAA

Protein Analysis

445

Amino Acids

50.18

Weight (kDa)

7.53

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 563
AccB1I GGYRCC 2 cut(s) 254, 605
AccI GTMKAC 1 cut(s) 454
AccII CGCG 4 cut(s) 98, 113, 1282, 1304
AciI CCGC 5 cut(s) 77, 519, 567, 972, 1282
AclWI GGATC 1 cut(s) 1253
AcoI YGGCCR 1 cut(s) 478
AcsI RAATTY 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 80
AdeI CACNNNGTG 1 cut(s) 360
AfaI GTAC 1 cut(s) 131
AfeI AGCGCT 1 cut(s) 54
AfiI CCNNNNNNNGG 5 cut(s) 250, 573, 1014, 1096, 1097
AflII CTTAAG 1 cut(s) 932
AflIII ACRYGT 2 cut(s) 120, 447
AgsI TTSAA 5 cut(s) 145, 238, 629, 656, 757
AjiI CACGTC 1 cut(s) 424
AjnI CCWGG 1 cut(s) 225
AluBI AGCT 6 cut(s) 273, 389, 473, 830, 1121, 1181
AluI AGCT 6 cut(s) 273, 389, 473, 830, 1121, 1181
Alw26I GTCTC 1 cut(s) 1127
AlwI GGATC 1 cut(s) 1253
AlwNI CAGNNNCTG 2 cut(s) 476, 1124
Aor51HI AGCGCT 1 cut(s) 54
AoxI GGCC 3 cut(s) 35, 321, 478
ApoI RAATTY 1 cut(s) 145
AspLEI GCGC 2 cut(s) 55, 787
AspS9I GGNCC 3 cut(s) 223, 322, 1313
AsuC2I CCSGG 2 cut(s) 1072, 1251
AsuHPI GGTGA 2 cut(s) 832, 1139
AvaII GGWCC 2 cut(s) 223, 1313
AxyI CCTNAGG 1 cut(s) 806
BaeGI GKGCMC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 480
BanI GGYRCC 2 cut(s) 254, 605
BanII GRGCYC 1 cut(s) 1091
BarI GAAGNNNNNNTAC 2 cut(s) 92, 124
BccI CCATC 4 cut(s) 203, 682, 817, 848
BciT130I CCWGG 1 cut(s) 227
BclI TGATCA 2 cut(s) 298, 351
BcnI CCSGG 2 cut(s) 1072, 1251
BcoDI GTCTC 1 cut(s) 1127
BfaI CTAG 2 cut(s) 270, 845
BfmI CTRYAG 2 cut(s) 905, 1209
BfoI RGCGCY 1 cut(s) 56
BfrI CTTAAG 1 cut(s) 932
Bme1390I CCNGG 3 cut(s) 227, 1072, 1251
Bme18I GGWCC 2 cut(s) 223, 1313
BmgBI CACGTC 1 cut(s) 424
BmgT120I GGNCC 3 cut(s) 223, 322, 1313
BmiI GGNNCC 6 cut(s) 256, 324, 607, 1006, 1314, 1315
BmrFI CCNGG 3 cut(s) 227, 1072, 1251
BmsI GCATC 5 cut(s) 192, 831, 873, 981, 1164
BoxI GACNNNNGTC 1 cut(s) 927
BpmI CTGGAG 1 cut(s) 1158
BpuMI CCSGG 2 cut(s) 1072, 1251
BsaHI GRCGYC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 925, 1026
Bsc4I CCNNNNNNNGG 5 cut(s) 250, 573, 1014, 1096, 1097
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 3 cut(s) 28, 481, 1141
Bse21I CCTNAGG 1 cut(s) 806
BseBI CCWGG 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 925, 1026
BseGI GGATG 2 cut(s) 190, 846
BseLI CCNNNNNNNGG 5 cut(s) 250, 573, 1014, 1096, 1097
BseMII CTCAG 3 cut(s) 170, 173, 820
BseNI ACTGG 3 cut(s) 28, 481, 1141
BseSI GKGCMC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 3 cut(s) 236, 489, 819
Bsh1236I CGCG 4 cut(s) 98, 113, 1282, 1304
BshFI GGCC 3 cut(s) 37, 323, 480
BshNI GGYRCC 2 cut(s) 254, 605
BsiSI CCGG 4 cut(s) 38, 221, 1072, 1251
BslFI GGGAC 3 cut(s) 929, 1181, 1326
BslI CCNNNNNNNGG 5 cut(s) 250, 573, 1014, 1096, 1097
BsmAI GTCTC 1 cut(s) 1127
BsmFI GGGAC 3 cut(s) 929, 1181, 1326
BsmI GAATGC 2 cut(s) 160, 1038
BsnI GGCC 3 cut(s) 37, 323, 480
Bsp1286I GDGCHC 2 cut(s) 257, 1091
Bsp143I GATC 5 cut(s) 298, 351, 487, 1105, 1258
Bsp68I TCGCGA 1 cut(s) 1304
BspACI CCGC 5 cut(s) 77, 519, 567, 972, 1282
BspANI GGCC 3 cut(s) 37, 323, 480
BspCNI CTCAG 3 cut(s) 171, 172, 819
BspFNI CGCG 4 cut(s) 98, 113, 1282, 1304
BspLI GGNNCC 6 cut(s) 256, 324, 607, 1006, 1314, 1315
BspPI GGATC 1 cut(s) 1253
BspT107I GGYRCC 2 cut(s) 254, 605
BspTI CTTAAG 1 cut(s) 932
BsrFI RCCGGY 1 cut(s) 37
BsrI ACTGG 3 cut(s) 28, 481, 1141
BssAI RCCGGY 1 cut(s) 37
BssECI CCNNGG 2 cut(s) 925, 1026
BssMI GATC 5 cut(s) 298, 351, 487, 1105, 1258
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 1 cut(s) 1026
Bst2UI CCWGG 1 cut(s) 227
Bst4CI ACNGT 6 cut(s) 139, 772, 909, 926, 1150, 1269
Bst6I CTCTTC 2 cut(s) 95, 699
BstACI GRCGYC 1 cut(s) 80
BstAFI CTTAAG 1 cut(s) 932
BstC8I GCNNGC 5 cut(s) 51, 115, 275, 374, 1179
BstDEI CTNAG 4 cut(s) 159, 179, 572, 806
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 2 cut(s) 190, 846
BstFNI CGCG 4 cut(s) 98, 113, 1282, 1304
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 55, 787
BstKTI GATC 5 cut(s) 301, 354, 490, 1108, 1261
BstMAI GTCTC 1 cut(s) 1127
BstMBI GATC 5 cut(s) 298, 351, 487, 1105, 1258
BstMWI GCNNNNNNNGC 7 cut(s) 43, 52, 61, 470, 734, 791, 1214
BstNI CCWGG 1 cut(s) 227
BstNSI RCATGY 2 cut(s) 451, 468
BstPAI GACNNNNGTC 1 cut(s) 927
BstSCI CCNGG 3 cut(s) 225, 1070, 1249
BstSFI CTRYAG 2 cut(s) 905, 1209
BstSLI GKGCMC 1 cut(s) 257
BstUI CGCG 4 cut(s) 98, 113, 1282, 1304
Bsu36I CCTNAGG 1 cut(s) 806
BsuRI GGCC 3 cut(s) 37, 323, 480
BtgI CCRYGG 1 cut(s) 925
BtgZI GCGATG 1 cut(s) 1269
BtrI CACGTC 1 cut(s) 424
BtsCI GGATG 2 cut(s) 190, 846
BtsI GCAGTG 1 cut(s) 723
BtsIMutI CAGTG 2 cut(s) 35, 723
BtuMI TCGCGA 1 cut(s) 1304
Cac8I GCNNGC 5 cut(s) 51, 115, 275, 374, 1179
CaiI CAGNNNCTG 2 cut(s) 476, 1124
CfoI GCGC 2 cut(s) 55, 787
Cfr10I RCCGGY 1 cut(s) 37
Cfr13I GGNCC 3 cut(s) 223, 322, 1313
CseI GACGC 2 cut(s) 69, 290
Csp6I GTAC 1 cut(s) 130
CviAII CATG 8 cut(s) 259, 313, 448, 465, 514, 779, 791, 1009
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 4 cut(s) 159, 179, 572, 806
DpnI GATC 5 cut(s) 300, 353, 489, 1107, 1260
DpnII GATC 5 cut(s) 298, 351, 487, 1105, 1258
DraIII CACNNNGTG 1 cut(s) 360
EaeI YGGCCR 1 cut(s) 478
Eam1104I CTCTTC 2 cut(s) 95, 699
EarI CTCTTC 2 cut(s) 95, 699
Eco130I CCWWGG 1 cut(s) 1026
Eco24I GRGCYC 1 cut(s) 1091
Eco47I GGWCC 2 cut(s) 223, 1313
Eco47III AGCGCT 1 cut(s) 54
Eco81I CCTNAGG 1 cut(s) 806
EcoO109I RGGNCCY 1 cut(s) 1313
EcoRI GAATTC 1 cut(s) 145
EcoRII CCWGG 1 cut(s) 225
EcoT14I CCWWGG 1 cut(s) 1026
EcoT38I GRGCYC 1 cut(s) 1091
ErhI CCWWGG 1 cut(s) 1026
FaeI CATG 8 cut(s) 262, 316, 451, 468, 517, 782, 794, 1012
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FaqI GGGAC 3 cut(s) 929, 1181, 1326
FatI CATG 8 cut(s) 258, 312, 447, 464, 513, 778, 790, 1008
FauI CCCGC 1 cut(s) 979
FbaI TGATCA 2 cut(s) 298, 351
FblI GTMKAC 1 cut(s) 454
FokI GGATG 2 cut(s) 197, 853
FriOI GRGCYC 1 cut(s) 1091
FspBI CTAG 2 cut(s) 270, 845
GlaI GCGC 2 cut(s) 54, 786
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 1158
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 3 cut(s) 37, 323, 480
HapII CCGG 4 cut(s) 38, 221, 1072, 1251
HgaI GACGC 2 cut(s) 69, 290
HhaI GCGC 2 cut(s) 55, 787
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 8 cut(s) 262, 316, 451, 468, 517, 782, 794, 1012
Hin6I GCGC 2 cut(s) 53, 785
HinP1I GCGC 2 cut(s) 53, 785
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 2 cut(s) 659, 1246
HpaII CCGG 4 cut(s) 38, 221, 1072, 1251
HphI GGTGA 2 cut(s) 832, 1139
Hpy166II GTNNAC 3 cut(s) 84, 455, 645
Hpy188I TCNGA 5 cut(s) 127, 153, 162, 382, 396
Hpy188III TCNNGA 6 cut(s) 142, 808, 866, 960, 1303, 1329
Hpy8I GTNNAC 3 cut(s) 84, 455, 645
HpyAV CCTTC 6 cut(s) 159, 244, 427, 1302, 1307, 1335
HpyCH4III ACNGT 6 cut(s) 139, 772, 909, 926, 1150, 1269
HpyCH4IV ACGT 4 cut(s) 120, 423, 938, 1240
HpyF10VI GCNNNNNNNGC 7 cut(s) 43, 52, 61, 470, 734, 791, 1214
HpyF3I CTNAG 4 cut(s) 159, 179, 572, 806
HpySE526I ACGT 4 cut(s) 120, 423, 938, 1240
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 8 cut(s) 262, 316, 451, 468, 517, 782, 794, 1012
HspAI GCGC 2 cut(s) 53, 785
KflI GGGWCCC 1 cut(s) 1313
Ksp22I TGATCA 2 cut(s) 298, 351
Kzo9I GATC 5 cut(s) 298, 351, 487, 1105, 1258
LmnI GCTCC 1 cut(s) 1004
LweI GCATC 5 cut(s) 192, 831, 873, 981, 1164
MaeI CTAG 2 cut(s) 270, 845
MaeII ACGT 4 cut(s) 120, 423, 938, 1240
MaeIII GTNAC 2 cut(s) 509, 1276
MalI GATC 5 cut(s) 300, 353, 489, 1107, 1260
MboI GATC 5 cut(s) 298, 351, 487, 1105, 1258
MboII GAAGA 9 cut(s) 101, 112, 416, 424, 668, 713, 716, 959, 1100
MfeI CAATTG 1 cut(s) 501
MhlI GDGCHC 2 cut(s) 257, 1091
MlsI TGGCCA 1 cut(s) 480
MluCI AATT 8 cut(s) 145, 334, 501, 612, 980, 1038, 1191, 1199
MluNI TGGCCA 1 cut(s) 480
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 7 cut(s) 174, 811, 815, 881, 888, 994, 1133
Mox20I TGGCCA 1 cut(s) 480
MscI TGGCCA 1 cut(s) 480
MseI TTAA 4 cut(s) 333, 536, 933, 1232
MslI CAYNNNNRTG 1 cut(s) 795
Msp20I TGGCCA 1 cut(s) 480
MspA1I CMGCKG 2 cut(s) 521, 1121
MspCI CTTAAG 1 cut(s) 932
MspI CCGG 4 cut(s) 38, 221, 1072, 1251
MspR9I CCNGG 3 cut(s) 227, 1072, 1251
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 2 cut(s) 160, 1038
MvaI CCWGG 1 cut(s) 227
MvnI CGCG 4 cut(s) 98, 113, 1282, 1304
MwoI GCNNNNNNNGC 7 cut(s) 43, 52, 61, 470, 734, 791, 1214
NciI CCSGG 2 cut(s) 1072, 1251
NdeII GATC 5 cut(s) 298, 351, 487, 1105, 1258
NlaIII CATG 8 cut(s) 262, 316, 451, 468, 517, 782, 794, 1012
NlaIV GGNNCC 6 cut(s) 256, 324, 607, 1006, 1314, 1315
NmuCI GTSAC 1 cut(s) 509
NruI TCGCGA 1 cut(s) 1304
NspI RCATGY 2 cut(s) 451, 468
PciI ACATGT 1 cut(s) 447
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 2 cut(s) 160, 1038
PfeI GAWTC 2 cut(s) 659, 1246
PfoI TCCNGGA 1 cut(s) 1070
PpuMI RGGWCCY 1 cut(s) 1313
PscI ACATGT 1 cut(s) 447
PshAI GACNNNNGTC 1 cut(s) 927
PsiI TTATAA 1 cut(s) 563
Psp5II RGGWCCY 1 cut(s) 1313
Psp6I CCWGG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 1 cut(s) 225
PspN4I GGNNCC 6 cut(s) 256, 324, 607, 1006, 1314, 1315
PspPI GGNCC 3 cut(s) 223, 322, 1313
PspPPI RGGWCCY 1 cut(s) 1313
PstNI CAGNNNCTG 2 cut(s) 476, 1124
PvuII CAGCTG 1 cut(s) 1121
RruI TCGCGA 1 cut(s) 1304
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
RseI CAYNNNNRTG 1 cut(s) 795
SaqAI TTAA 4 cut(s) 333, 536, 933, 1232
Sau3AI GATC 5 cut(s) 298, 351, 487, 1105, 1258
Sau96I GGNCC 3 cut(s) 223, 322, 1313
ScrFI CCNGG 3 cut(s) 227, 1072, 1251
SduI GDGCHC 2 cut(s) 257, 1091
SfaNI GCATC 5 cut(s) 192, 831, 873, 981, 1164
SfcI CTRYAG 2 cut(s) 905, 1209
SinI GGWCC 2 cut(s) 223, 1313
SmiMI CAYNNNNRTG 1 cut(s) 795
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
Sse9I AATT 8 cut(s) 145, 334, 501, 612, 980, 1038, 1191, 1199
SsiI CCGC 5 cut(s) 77, 519, 567, 972, 1282
SspI AATATT 1 cut(s) 249
SspMI CTAG 2 cut(s) 270, 845
StyD4I CCNGG 3 cut(s) 225, 1070, 1249
StyI CCWWGG 1 cut(s) 1026
TaaI ACNGT 6 cut(s) 139, 772, 909, 926, 1150, 1269
TaiI ACGT 4 cut(s) 123, 426, 941, 1243
TaqI TCGA 2 cut(s) 207, 490
TasI AATT 8 cut(s) 145, 334, 501, 612, 980, 1038, 1191, 1199
TatI WGTACW 1 cut(s) 129
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 2 cut(s) 659, 1246
Tru1I TTAA 4 cut(s) 333, 536, 933, 1232
Tru9I TTAA 4 cut(s) 333, 536, 933, 1232
TscAI CASTG 2 cut(s) 35, 730
TseFI GTSAC 1 cut(s) 509
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 5 cut(s) 275, 320, 425, 779, 968
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 2 cut(s) 35, 730
Vha464I CTTAAG 1 cut(s) 932
VpaK11BI GGWCC 2 cut(s) 223, 1313
XapI RAATTY 1 cut(s) 145
XceI RCATGY 2 cut(s) 451, 468
XcmI CCANNNNNNNNNTGG 1 cut(s) 20
XmiI GTMKAC 1 cut(s) 454
XspI CTAG 2 cut(s) 270, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.