Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003017

Physical Location & Seq

Genomic Coordinates Reverse (-)

51803322 .. 51806398

Gene Structure 3077 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG296000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAAGGCATACACCGCCAAGTCCAGATCTTCCCATATGGTGGAAGCCAAGCCAAGCTGGAGCGAGTCCATCTTGAAGTTCTTAAAGTAATGATTCAAGATCTTTCCCATTCTGCATTTCAGTTTTTGGTGATGGAAGTTCTTTTGGACATGCTAAAGGATGGAAACTATCTTGATACCTATATTGTAATTCAAACCATGAGATGCTATTTGAACTGTGATGATATTGATCGTGGTGTGCAAACCCCTGATGACTATCTGAAGTTAGGGAAGCTTCCTGCACCAGAACTCATAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

99

Amino Acids

11.4

Weight (kDa)

4.95

Isoelectric Point (pI)

12.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35850
fragaria_vesca	FvH4_6g51990
malus_domestica	MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1
prunus_persica	Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1
pyrus_communis	pycom111g01770 pycom17g01800
rosa_chinensis	RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191
rosa_laevigata	RLG00000022192
rosa_multiflora	Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039
rosa_roxburghii	Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510
rosa_rugosa	Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700
rosa_samantha	Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100
rosa_wichuraiana	Rw2G053290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	41
AciI	CCGC	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	4 cut(s)	77, 98, 194, 214
AluBI	AGCT	2 cut(s)	58, 274
AluI	AGCT	2 cut(s)	58, 274
AsuHPI	GGTGA	1 cut(s)	142
BccI	CCATC	3 cut(s)	78, 127, 155
BglII	AGATCT	2 cut(s)	27, 100
BmsI	GCATC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	80
BsaBI	GATNNNNATC	2 cut(s)	228, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse8I	GATNNNNATC	2 cut(s)	228, 255
BseGI	GGATG	1 cut(s)	166
BseJI	GATNNNNATC	2 cut(s)	228, 255
BseLI	CCNNNNNNNGG	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	27, 100, 229
BspACI	CCGC	1 cut(s)	16
BssMI	GATC	3 cut(s)	27, 100, 229
Bst4CI	ACNGT	1 cut(s)	218
BstF5I	GGATG	1 cut(s)	166
BstKTI	GATC	3 cut(s)	30, 103, 232
BstMBI	GATC	3 cut(s)	27, 100, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	154
BstX2I	RGATCY	2 cut(s)	27, 100
BstYI	RGATCY	2 cut(s)	27, 100
BtsCI	GGATG	1 cut(s)	166
CviAII	CATG	2 cut(s)	151, 199
CviJI	RGCY	4 cut(s)	48, 53, 58, 274
CviKI_1	RGCY	4 cut(s)	48, 53, 58, 274
DpnI	GATC	3 cut(s)	29, 102, 231
DpnII	GATC	3 cut(s)	27, 100, 229
Eco57I	CTGAAG	1 cut(s)	281
FaeI	CATG	2 cut(s)	154, 202
FaiI	YATR	8 cut(s)	11, 37, 39, 152, 183, 200, 293, 298
FatI	CATG	2 cut(s)	150, 198
FauNDI	CATATG	1 cut(s)	37
FokI	GGATG	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	80
Hin1II	CATG	2 cut(s)	154, 202
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	66, 94
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	261
Hpy188III	TCNNGA	4 cut(s)	25, 74, 98, 173
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	3 cut(s)	116, 241, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	154, 202
Kzo9I	GATC	3 cut(s)	27, 100, 229
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	38, 44, 261, 291
LweI	GCATC	1 cut(s)	194
MalI	GATC	3 cut(s)	29, 102, 231
MboI	GATC	3 cut(s)	27, 100, 229
MboII	GAAGA	1 cut(s)	22
MflI	RGATCY	2 cut(s)	27, 100
MluCI	AATT	1 cut(s)	189
MlyI	GAGTC	1 cut(s)	75
MseI	TTAA	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	15
NdeI	CATATG	1 cut(s)	37
NdeII	GATC	3 cut(s)	27, 100, 229
NlaIII	CATG	2 cut(s)	154, 202
NspI	RCATGY	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	94
PflMI	CCANNNNNTGG	1 cut(s)	41
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	27, 100
SaqAI	TTAA	1 cut(s)	84
Sau3AI	GATC	3 cut(s)	27, 100, 229
SchI	GAGTC	1 cut(s)	75
SetI	ASST	3 cut(s)	60, 182, 276
SfaNI	GCATC	1 cut(s)	194
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	1 cut(s)	16
TaaI	ACNGT	1 cut(s)	218
TasI	AATT	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	41
XceI	RCATGY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.