Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003017

Physical Location & Seq

Genomic Coordinates Forward (+)

69494416 .. 69497008

Gene Structure 2593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0569500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2568 bp

ATGCCAAATACCAACATGAAACCAACCGTCGCTCCTCTATACCTGTTCTTGTTTCTTCACATCCACACCCTACTTGTGTCCGGTGATCCACCACCTATCTACACTCCGGTGGAAGATATCACTCTCAACTGTGGCTACTCCGGTAGCTCACGGGATTTATATAGTAATCGCAATTGGACTGGAGATATCAACTCACAGTTCTCCCCCATAGAAGCTGTTAACACCACCTCCCAAGTCAAAGAAGCACCACCTTCCTCCTCCTCAGCTAGCCAAGTACCATACACCACAGCACGGTTATCTCGTTACAAATTTACGTACCGATTTTACAACCTCACTGCTGGCCAAAAGTTCATTCGGTTGTATTTCAACCCAGCTTCGTACCCAAACTTCGAGCCCTCCAAAGCTCTCTTCTCTGTCACAATCGGTCGGTATACAGTTCTCAAAGACTTCAATGCTTCAGCTACTGCGGATGCTAATTTTATGGAGACTCTATATAAAGAATTCTGTTTAAATATTGACAATGAAGGAGAGAATATAAACATCACCTTCACTCCAAGCACCAAAGCCAAAGGTACATACGCATTTATCAACGGAATTGAAATCGTTTCAATGCCAACCAATCTTTACTACTCACCAACACAGAGCTACGGGGTGTCATATCCGGACAACGAAGTGAACTATTACATAGAAAACAACACTGCACTGGAGATGGTCTATCGAATCAACGTCGGTGGAAGCCCAGTCTCGCCCAATGAAGACACCGGCATGTACCGGGAGTGGGATAGCGCCGACGACATCTACCTGGATGATTTAAGTAGAAGATTCAGCGTGAAATCATCAAACAATACCATTGAGCTCAGTTTTGAAGCAGTGCCGGAATACTCTGCCCCAAAAGCAGTTTACGTAACAGGTCGGTCAATGGGGGGGAACAATACCTTCAACAAGAGCTACAATCTCACCTGGGCATTTCCTGTGGACTCAAACTTCTCGTACCTGGTTAGGCTGCACTTTTGCGAGTTCGAGTCTGTCATTACTCAACCTAGGGACCGAGCATTTCTAATCTACATAGCCAATATAACCACAGAGGAAGTAGCCGACGTAATAATGTGGAGCGGTGGGAATGGGAGTCCGGTATACAAGGACTATTATGTATACATGACTGGCCCTGTGAACTCAAAGGAAGTAAATCTCTTTGTCACCCTTCAAGCAAACCCACGCGATTCGGAAACTGGATACAACGATGCCATCTTGAACGGGCTCGAGATCTTCAAACTTAATAACTCAATTGGTAATCTAGCTGGGCCGAACCCATCTCCACCACCAAAGGCGATGCAGTCAAGCCCCAACAAGCCCAACAAGAAGTCAACCCATATGCTTGCCATTGTTCCTAGCATACTACTGGTACTTTTTCTCTCTTTGCTCGGGTTTTTAGTCTTTAGCGGAGGGCATTGGGAAGTCAAAGACTCTGGCTCTAGCTACCAAATAGAAAACTCATTACTACCGTCTGATTTGTGCCATTACTTTTCACTGACGGAGATCAAGGCTGCCACCAAAAATTTCGATGACAGTTTTATTATTGGAGTTGGCGGGTTTGGCCACGTGTACAAAGGACACTTTGATGATGGGGCCACCCTCGTTGCAATCAAACGGCTCAAAGCCACATCATCACAGGGCGCCCATGAGTTCATGACAGAAATCAAGATGCTCTCTGGACTGCGCCACCACCATTTGGTGTCTTTGATCGGATATTGTGCCGATCAAGGTGAGATGGTCTTGGTGTACGATTACATGGCACGTGGGACCCTTAGTGACCATTTGCACCACACCAAGAAACCACATCTTCCTTGGGAACAACGACTTCGGATTTGTATTGGTGCAGCGCAAGGTTTGCACTACCTTCACACAGGTACCAAAGGCACCATCATTCACCGTGACGTAAAGAGCACAAACATATTACTAGACGAGAAATGGGTAGCCAAGGTTTCTGATTTTGGGTTATCAAAAATGGGTAATATCACAATCTCCAAAACCCACATTAGCACGAAGGTGAAGGGTAGTTTCGGATATCTTGACCCTGATTACTACCGGCGTCAACAATTGACTGAGAAGTCCGACGTGTACTCATTTGGCGTAGTGTTATGCGAAGTATTGTGTGGGAGGCCAGCTGTGACCATCGTGGATAATAATCGAGTTGGCCTGGCTGGATGGGCCAAAAAGTGTTATCGCGATGGAAAACTTGATCAAATTGTTGACCCGAATTTGAAGGGTGAAATTGCAGTTCGATGCTTGCATAGATTTGCTTCCATTGCAATGAGTTGCATGGATGATAATGGGATCAATCGGCCGCCAATGGATGATGTTGTGAGAGGGCTTCAGTTTGCATTGCAGATGCAGGAAAACAACGAGGATTATATTGATCACATTGAAAGGACGGTTCAACATGAGATTTCATTGATCAAGGACAATGAAGGGTCTTGTTCTAGTGAGCAAAGCCGTGGGGCGAAGGAATCCATCCAAGAGTTGACTAGAACAATTTTCTCCGAGATCATTGATCCGGTTGGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

855

Amino Acids

95.65

Weight (kDa)

5.99

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	42 - 424	2.5e-26	Malectin-like domain
Malectin	PF11721	42 - 175	2.1e-06	Malectin domain
Pkinase	PF00069	525 - 726	1e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	526 - 789	4.6e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35850
fragaria_vesca	FvH4_6g51990
malus_domestica	MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1
prunus_persica	Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1
pyrus_communis	pycom111g01770 pycom17g01800
rosa_chinensis	RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191
rosa_laevigata	RLG00000022192
rosa_multiflora	Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039
rosa_roxburghii	Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510
rosa_rugosa	Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700
rosa_samantha	Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100
rosa_wichuraiana	Rw2G053290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2107
Acc65I	GGTACC	1 cut(s)	1907
AccB1I	GGYRCC	3 cut(s)	1673, 1907, 1916
AccB7I	CCANNNNNTGG	1 cut(s)	1729
AccBSI	CCGCTC	1 cut(s)	1113
AccI	GTMKAC	3 cut(s)	431, 1134, 1152
AccII	CGCG	2 cut(s)	1218, 2226
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	5 cut(s)	467, 1113, 1440, 1587, 2345
AclWI	GGATC	3 cut(s)	80, 2342, 2546
AcoI	YGGCCR	3 cut(s)	340, 1594, 2342
AcsI	RAATTY	4 cut(s)	308, 500, 1555, 2257
AcuI	CTGAAG	2 cut(s)	441, 2357
AcvI	CACGTG	2 cut(s)	1600, 1796
AcyI	GRCGYC	2 cut(s)	1674, 2089
AfiI	CCNNNNNNNGG	3 cut(s)	291, 778, 1729
AflIII	ACRYGT	2 cut(s)	1599, 2115
AjiI	CACGTC	1 cut(s)	2116
AjnI	CCWGG	4 cut(s)	801, 959, 993, 2196
AjuI	GAANNNNNNNTTGG	4 cut(s)	336, 368, 392, 424
AleI	CACNNNNGTG	2 cut(s)	107, 2045
Alw21I	GWGCWC	2 cut(s)	858, 1946
Alw26I	GTCTC	2 cut(s)	479, 748
AlwI	GGATC	3 cut(s)	80, 2342, 2546
AlwNI	CAGNNNCTG	1 cut(s)	464
Ama87I	CYCGRG	2 cut(s)	1259, 1421
Aor13HI	TCCGGA	1 cut(s)	661
AoxI	GGCC	9 cut(s)	340, 1162, 1301, 1594, 1626, 2159, 2194, 2208, 2342
ApeKI	GCWGC	3 cut(s)	1003, 1544, 1877
ApoI	RAATTY	4 cut(s)	308, 500, 1555, 2257
ArsI	GACNNNNNNTTYG	2 cut(s)	1848, 1880
Asp718I	GGTACC	1 cut(s)	1907
AspA2I	CCTAGG	1 cut(s)	1040
AspLEI	GCGC	4 cut(s)	788, 1676, 1719, 1882
AspS9I	GGNCC	6 cut(s)	1045, 1163, 1301, 1626, 1800, 2208
AsuC2I	CCSGG	1 cut(s)	773
AsuHPI	GGTGA	9 cut(s)	95, 535, 624, 949, 1189, 1775, 1919, 2059, 2279
AsuNHI	GCTAGC	1 cut(s)	266
AvaI	CYCGRG	2 cut(s)	1259, 1421
AvaII	GGWCC	2 cut(s)	1045, 1800
AvrII	CCTAGG	1 cut(s)	1040
BaeI	ACNNNNGTAYC	2 cut(s)	1891, 1924
BalI	TGGCCA	2 cut(s)	342, 1596
BanI	GGYRCC	3 cut(s)	1673, 1907, 1916
BanII	GRGCYC	3 cut(s)	396, 858, 1260
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
BbrPI	CACGTG	2 cut(s)	1600, 1796
BbsI	GAAGAC	1 cut(s)	762
Bbv12I	GWGCWC	2 cut(s)	858, 1946
BbvCI	CCTCAGC	1 cut(s)	262
BbvI	GCAGC	3 cut(s)	990, 1531, 1889
BceAI	ACGGC	2 cut(s)	1664, 2478
BciT130I	CCWGG	4 cut(s)	803, 961, 995, 2198
BciVI	GTATCC	1 cut(s)	1226
BclI	TGATCA	3 cut(s)	2239, 2416, 2454
BcnI	CCSGG	1 cut(s)	773
BcoDI	GTCTC	2 cut(s)	479, 748
BfaI	CTAG	8 cut(s)	267, 1041, 1295, 1389, 1473, 1958, 2481, 2526
BfoI	RGCGCY	2 cut(s)	789, 1677
BfuI	GTATCC	1 cut(s)	1226
BglII	AGATCT	1 cut(s)	1263
BisI	GCNGC	4 cut(s)	1004, 1545, 1878, 2345
BlnI	CCTAGG	1 cut(s)	1040
BlsI	GCNGC	4 cut(s)	1005, 1546, 1879, 2346
Bme1390I	CCNGG	5 cut(s)	773, 803, 961, 995, 2198
Bme18I	GGWCC	2 cut(s)	1045, 1800
BmeT110I	CYCGRG	2 cut(s)	1259, 1421
BmgBI	CACGTC	1 cut(s)	2116
BmgT120I	GGNCC	6 cut(s)	1045, 1163, 1301, 1626, 1800, 2208
BmiI	GGNNCC	7 cut(s)	1046, 1627, 1675, 1801, 1802, 1909, 1918
BmrFI	CCNGG	5 cut(s)	773, 803, 961, 995, 2198
BmrI	ACTGGG	1 cut(s)	734
BmsI	GCATC	6 cut(s)	460, 1231, 1320, 1692, 2273, 2379
BmtI	GCTAGC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	734
BpiI	GAAGAC	1 cut(s)	762
BpmI	CTGGAG	2 cut(s)	201, 725
Bpu10I	CCTNAGC	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	773
BsaAI	YACGTR	4 cut(s)	315, 904, 1600, 1796
BsaBI	GATNNNNATC	1 cut(s)	2184
BsaHI	GRCGYC	2 cut(s)	1674, 2089
BsaJI	CCNNGG	5 cut(s)	960, 1040, 1844, 1977, 2494
BsaWI	WCCGGW	6 cut(s)	80, 106, 140, 661, 1129, 2554
BsaXI	ACNNNNNCTCC	6 cut(s)	16, 46, 212, 242, 535, 565
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 778, 1729
Bse118I	RCCGGY	2 cut(s)	761, 2085
Bse1I	ACTGG	6 cut(s)	184, 708, 740, 1165, 1234, 1404
Bse3DI	GCAATG	3 cut(s)	2304, 2316, 2381
Bse8I	GATNNNNATC	1 cut(s)	2184
BseAI	TCCGGA	1 cut(s)	661
BseBI	CCWGG	4 cut(s)	803, 961, 995, 2198
BseDI	CCNNGG	5 cut(s)	960, 1040, 1844, 1977, 2494
BseGI	GGATG	7 cut(s)	60, 475, 811, 2210, 2329, 2359, 2511
BseJI	GATNNNNATC	1 cut(s)	2184
BseLI	CCNNNNNNNGG	3 cut(s)	291, 778, 1729
BseMI	GCAATG	3 cut(s)	2304, 2316, 2381
BseMII	CTCAG	3 cut(s)	276, 871, 2094
BseNI	ACTGG	6 cut(s)	184, 708, 740, 1165, 1234, 1404
BseRI	GAGGAG	3 cut(s)	24, 247, 250
BseX3I	CGGCCG	1 cut(s)	2342
BseXI	GCAGC	3 cut(s)	990, 1531, 1889
BseYI	CCCAGC	2 cut(s)	370, 1298
BsgI	GTGCAG	3 cut(s)	684, 989, 1896
Bsh1236I	CGCG	2 cut(s)	1218, 2226
Bsh1285I	CGRYCG	2 cut(s)	427, 2345
BshFI	GGCC	9 cut(s)	342, 1164, 1303, 1596, 1628, 2161, 2196, 2210, 2344
BshNI	GGYRCC	3 cut(s)	1673, 1907, 1916
BsiEI	CGRYCG	2 cut(s)	427, 2345
BsiHKAI	GWGCWC	2 cut(s)	858, 1946
BsiHKCI	CYCGRG	2 cut(s)	1259, 1421
BslFI	GGGAC	2 cut(s)	1058, 1813
BslI	CCNNNNNNNGG	3 cut(s)	291, 778, 1729
BsmAI	GTCTC	2 cut(s)	479, 748
BsmFI	GGGAC	2 cut(s)	1058, 1813
BsnI	GGCC	9 cut(s)	342, 1164, 1303, 1596, 1628, 2161, 2196, 2210, 2344
BsoBI	CYCGRG	2 cut(s)	1259, 1421
Bsp1286I	GDGCHC	4 cut(s)	396, 858, 1260, 1946
Bsp13I	TCCGGA	1 cut(s)	661
Bsp1407I	TGTACA	1 cut(s)	1602
Bsp68I	TCGCGA	1 cut(s)	2226
BspACI	CCGC	5 cut(s)	467, 1113, 1440, 1587, 2345
BspANI	GGCC	9 cut(s)	342, 1164, 1303, 1596, 1628, 2161, 2196, 2210, 2344
BspCNI	CTCAG	3 cut(s)	275, 870, 2095
BspEI	TCCGGA	1 cut(s)	661
BspFNI	CGCG	2 cut(s)	1218, 2226
BspHI	TCATGA	1 cut(s)	1686
BspLI	GGNNCC	7 cut(s)	1046, 1627, 1675, 1801, 1802, 1909, 1918
BspOI	GCTAGC	1 cut(s)	270
BspPI	GGATC	3 cut(s)	80, 2342, 2546
BspT107I	GGYRCC	3 cut(s)	1673, 1907, 1916
BsrBI	CCGCTC	1 cut(s)	1113
BsrDI	GCAATG	3 cut(s)	2304, 2316, 2381
BsrFI	RCCGGY	2 cut(s)	761, 2085
BsrGI	TGTACA	1 cut(s)	1602
BsrI	ACTGG	6 cut(s)	184, 708, 740, 1165, 1234, 1404
BssAI	RCCGGY	2 cut(s)	761, 2085
BssECI	CCNNGG	5 cut(s)	960, 1040, 1844, 1977, 2494
BssNAI	GTATAC	3 cut(s)	432, 1135, 1153
BssNI	GRCGYC	2 cut(s)	1674, 2089
BssT1I	CCWWGG	3 cut(s)	1040, 1844, 1977
Bst1107I	GTATAC	3 cut(s)	432, 1135, 1153
Bst2UI	CCWGG	4 cut(s)	803, 961, 995, 2198
Bst4CI	ACNGT	9 cut(s)	28, 131, 198, 294, 436, 1503, 1568, 1931, 2434
Bst6I	CTCTTC	1 cut(s)	413
BstACI	GRCGYC	2 cut(s)	1674, 2089
BstAPI	GCANNNNNTGC	1 cut(s)	1888
BstAUI	TGTACA	1 cut(s)	1602
BstBAI	YACGTR	4 cut(s)	315, 904, 1600, 1796
BstC8I	GCNNGC	5 cut(s)	268, 340, 1377, 2163, 2288
BstDEI	CTNAG	4 cut(s)	262, 857, 1805, 2103
BstDSI	CCRYGG	1 cut(s)	2494
BstF5I	GGATG	7 cut(s)	60, 475, 811, 2210, 2329, 2359, 2511
BstFNI	CGCG	2 cut(s)	1218, 2226
BstH2I	RGCGCY	2 cut(s)	789, 1677
BstHHI	GCGC	4 cut(s)	788, 1676, 1719, 1882
BstMAI	GTCTC	2 cut(s)	479, 748
BstMCI	CGRYCG	2 cut(s)	427, 2345
BstMWI	GCNNNNNNNGC	5 cut(s)	893, 1593, 1888, 2207, 2306
BstNI	CCWGG	4 cut(s)	803, 961, 995, 2198
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	5 cut(s)	771, 801, 959, 993, 2196
BstSNI	TACGTA	2 cut(s)	315, 904
BstUI	CGCG	2 cut(s)	1218, 2226
BstV1I	GCAGC	3 cut(s)	990, 1531, 1889
BstV2I	GAAGAC	1 cut(s)	762
BstX2I	RGATCY	1 cut(s)	1263
BstYI	RGATCY	1 cut(s)	1263
BstZ17I	GTATAC	3 cut(s)	432, 1135, 1153
BstZI	CGGCCG	1 cut(s)	2342
BsuI	GTATCC	1 cut(s)	1226
BsuRI	GGCC	9 cut(s)	342, 1164, 1303, 1596, 1628, 2161, 2196, 2210, 2344
BtgI	CCRYGG	1 cut(s)	2494
BtgZI	GCGATG	2 cut(s)	1343, 2241
BtrI	CACGTC	1 cut(s)	2116
BtsCI	GGATG	7 cut(s)	60, 475, 811, 2210, 2329, 2359, 2511
BtsI	GCAGTG	3 cut(s)	333, 696, 876
BtsIMutI	CAGTG	5 cut(s)	333, 696, 701, 876, 1526
BtuMI	TCGCGA	1 cut(s)	2226
Cac8I	GCNNGC	5 cut(s)	268, 340, 1377, 2163, 2288
CaiI	CAGNNNCTG	1 cut(s)	464
CciI	TCATGA	1 cut(s)	1686
CfoI	GCGC	4 cut(s)	788, 1676, 1719, 1882
Cfr10I	RCCGGY	2 cut(s)	761, 2085
Cfr13I	GGNCC	6 cut(s)	1045, 1163, 1301, 1626, 1800, 2208
CseI	GACGC	1 cut(s)	2078
CsiI	ACCWGGT	1 cut(s)	993
CspCI	CAANNNNNGTGG	4 cut(s)	712, 747, 1618, 1653
CviAII	CATG	8 cut(s)	16, 766, 1156, 1679, 1687, 1789, 2320, 2441
DdeI	CTNAG	4 cut(s)	262, 857, 1805, 2103
DinI	GGCGCC	1 cut(s)	1675
DraI	TTTAAA	1 cut(s)	510
DrdI	GACNNNNNNGTC	1 cut(s)	2107
DseDI	GACNNNNNNGTC	1 cut(s)	2107
EaeI	YGGCCR	3 cut(s)	340, 1594, 2342
EagI	CGGCCG	1 cut(s)	2342
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Ecl136II	GAGCTC	1 cut(s)	856
EclXI	CGGCCG	1 cut(s)	2342
Eco105I	TACGTA	2 cut(s)	315, 904
Eco130I	CCWWGG	3 cut(s)	1040, 1844, 1977
Eco24I	GRGCYC	3 cut(s)	396, 858, 1260
Eco32I	GATATC	3 cut(s)	118, 187, 2066
Eco47I	GGWCC	2 cut(s)	1045, 1800
Eco52I	CGGCCG	1 cut(s)	2342
Eco53kI	GAGCTC	1 cut(s)	856
Eco57I	CTGAAG	2 cut(s)	441, 2357
Eco72I	CACGTG	2 cut(s)	1600, 1796
Eco88I	CYCGRG	2 cut(s)	1259, 1421
EcoICRI	GAGCTC	1 cut(s)	856
EcoO109I	RGGNCCY	1 cut(s)	1800
EcoRI	GAATTC	1 cut(s)	500
EcoRII	CCWGG	4 cut(s)	801, 959, 993, 2196
EcoRV	GATATC	3 cut(s)	118, 187, 2066
EcoT14I	CCWWGG	3 cut(s)	1040, 1844, 1977
EcoT38I	GRGCYC	3 cut(s)	396, 858, 1260
EgeI	GGCGCC	1 cut(s)	1675
EheI	GGCGCC	1 cut(s)	1675
ErhI	CCWWGG	3 cut(s)	1040, 1844, 1977
FaeI	CATG	8 cut(s)	19, 769, 1159, 1682, 1690, 1792, 2323, 2444
FaqI	GGGAC	2 cut(s)	1058, 1813
FatI	CATG	8 cut(s)	15, 765, 1155, 1678, 1686, 1788, 2319, 2440
FauI	CCCGC	1 cut(s)	1580
FauNDI	CATATG	1 cut(s)	1371
FbaI	TGATCA	3 cut(s)	2239, 2416, 2454
FblI	GTMKAC	3 cut(s)	431, 1134, 1152
Fnu4HI	GCNGC	4 cut(s)	1004, 1545, 1878, 2345
FokI	GGATG	7 cut(s)	47, 482, 818, 2217, 2336, 2366, 2498
FriOI	GRGCYC	3 cut(s)	396, 858, 1260
Fsp4HI	GCNGC	4 cut(s)	1004, 1545, 1878, 2345
FspBI	CTAG	8 cut(s)	267, 1041, 1295, 1389, 1473, 1958, 2481, 2526
GlaI	GCGC	4 cut(s)	787, 1675, 1718, 1881
GluI	GCNGC	4 cut(s)	1004, 1545, 1878, 2345
GsaI	CCCAGC	2 cut(s)	374, 1302
GsuI	CTGGAG	2 cut(s)	201, 725
HaeII	RGCGCY	2 cut(s)	789, 1677
HaeIII	GGCC	9 cut(s)	342, 1164, 1303, 1596, 1628, 2161, 2196, 2210, 2344
HgaI	GACGC	1 cut(s)	2078
HhaI	GCGC	4 cut(s)	788, 1676, 1719, 1882
Hin1I	GRCGYC	2 cut(s)	1674, 2089
Hin1II	CATG	8 cut(s)	19, 769, 1159, 1682, 1690, 1792, 2323, 2444
Hin6I	GCGC	4 cut(s)	786, 1674, 1717, 1880
HinP1I	GCGC	4 cut(s)	786, 1674, 1717, 1880
HincII	GTYRAC	5 cut(s)	220, 1365, 2093, 2251, 2523
HindII	GTYRAC	5 cut(s)	220, 1365, 2093, 2251, 2523
HinfI	GANTC	9 cut(s)	487, 720, 822, 977, 1022, 1126, 1220, 1463, 2507
HpaI	GTTAAC	1 cut(s)	220
HphI	GGTGA	9 cut(s)	95, 535, 624, 949, 1189, 1775, 1919, 2059, 2279
Hpy188I	TCNGA	8 cut(s)	1225, 1507, 1745, 1863, 1987, 2063, 2113, 2542
Hpy188III	TCNNGA	8 cut(s)	662, 1249, 1261, 1687, 1699, 1710, 2069, 2225
Hpy99I	CGWCG	5 cut(s)	32, 731, 794, 1100, 2117
HpyCH4III	ACNGT	9 cut(s)	28, 131, 198, 294, 436, 1503, 1568, 1931, 2434
HpyCH4IV	ACGT	8 cut(s)	314, 726, 903, 1098, 1599, 1795, 1935, 2115
HpyF10VI	GCNNNNNNNGC	5 cut(s)	893, 1593, 1888, 2207, 2306
HpyF3I	CTNAG	4 cut(s)	262, 857, 1805, 2103
HpySE526I	ACGT	8 cut(s)	314, 726, 903, 1098, 1599, 1795, 1935, 2115
Hsp92I	GRCGYC	2 cut(s)	1674, 2089
Hsp92II	CATG	8 cut(s)	19, 769, 1159, 1682, 1690, 1792, 2323, 2444
HspAI	GCGC	4 cut(s)	786, 1674, 1717, 1880
KasI	GGCGCC	1 cut(s)	1673
KflI	GGGWCCC	1 cut(s)	1800
Kpn2I	TCCGGA	1 cut(s)	661
KpnI	GGTACC	1 cut(s)	1911
Ksp22I	TGATCA	3 cut(s)	2239, 2416, 2454
KspAI	GTTAAC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	37, 1110
Lsp1109I	GCAGC	3 cut(s)	990, 1531, 1889
LweI	GCATC	6 cut(s)	460, 1231, 1320, 1692, 2273, 2379
MabI	ACCWGGT	1 cut(s)	993
MaeI	CTAG	8 cut(s)	267, 1041, 1295, 1389, 1473, 1958, 2481, 2526
MaeII	ACGT	8 cut(s)	314, 726, 903, 1098, 1599, 1795, 1935, 2115
MaeIII	GTNAC	7 cut(s)	302, 415, 904, 1195, 1808, 1931, 2167
MbiI	CCGCTC	1 cut(s)	1113
MboII	GAAGA	7 cut(s)	47, 125, 400, 767, 831, 1258, 1832
MfeI	CAATTG	3 cut(s)	172, 1284, 2096
MflI	RGATCY	1 cut(s)	1263
MhlI	GDGCHC	4 cut(s)	396, 858, 1260, 1946
MlsI	TGGCCA	2 cut(s)	342, 1596
MluNI	TGGCCA	2 cut(s)	342, 1596
Mly113I	GGCGCC	1 cut(s)	1674
MlyI	GAGTC	5 cut(s)	481, 971, 1031, 1135, 1457
MmeI	TCCRAC	2 cut(s)	2136, 2539
Mox20I	TGGCCA	2 cut(s)	342, 1596
MroI	TCCGGA	1 cut(s)	661
MscI	TGGCCA	2 cut(s)	342, 1596
MseI	TTAA	4 cut(s)	219, 509, 812, 1275
MslI	CAYNNNNRTG	5 cut(s)	107, 764, 1617, 2045, 2309
Msp20I	TGGCCA	2 cut(s)	342, 1596
MspA1I	CMGCKG	1 cut(s)	2165
MspR9I	CCNGG	5 cut(s)	773, 803, 961, 995, 2198
MunI	CAATTG	3 cut(s)	172, 1284, 2096
MvaI	CCWGG	4 cut(s)	803, 961, 995, 2198
MvnI	CGCG	2 cut(s)	1218, 2226
MwoI	GCNNNNNNNGC	5 cut(s)	893, 1593, 1888, 2207, 2306
NarI	GGCGCC	1 cut(s)	1674
NciI	CCSGG	1 cut(s)	773
NdeI	CATATG	1 cut(s)	1371
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	8 cut(s)	19, 769, 1159, 1682, 1690, 1792, 2323, 2444
NlaIV	GGNNCC	7 cut(s)	1046, 1627, 1675, 1801, 1802, 1909, 1918
NmuCI	GTSAC	5 cut(s)	415, 1195, 1808, 1931, 2167
NruI	TCGCGA	1 cut(s)	2226
NspI	RCATGY	1 cut(s)	769
OliI	CACNNNNGTG	2 cut(s)	107, 2045
PaeR7I	CTCGAG	1 cut(s)	1259
PagI	TCATGA	1 cut(s)	1686
PcsI	WCGNNNNNNNCGW	1 cut(s)	298
PfeI	GAWTC	4 cut(s)	720, 822, 1220, 2507
PflMI	CCANNNNNTGG	1 cut(s)	1729
PkrI	GCNGC	4 cut(s)	1005, 1546, 1879, 2346
PleI	GAGTC	5 cut(s)	481, 971, 1030, 1134, 1457
PluTI	GGCGCC	1 cut(s)	1677
PmaCI	CACGTG	2 cut(s)	1600, 1796
PmlI	CACGTG	2 cut(s)	1600, 1796
PpsI	GAGTC	5 cut(s)	481, 971, 1030, 1134, 1457
Ppu21I	YACGTR	4 cut(s)	315, 904, 1600, 1796
PpuMI	RGGWCCY	1 cut(s)	1800
Psp124BI	GAGCTC	1 cut(s)	858
Psp5II	RGGWCCY	1 cut(s)	1800
Psp6I	CCWGG	4 cut(s)	801, 959, 993, 2196
PspCI	CACGTG	2 cut(s)	1600, 1796
PspFI	CCCAGC	2 cut(s)	370, 1298
PspGI	CCWGG	4 cut(s)	801, 959, 993, 2196
PspN4I	GGNNCC	7 cut(s)	1046, 1627, 1675, 1801, 1802, 1909, 1918
PspPI	GGNCC	6 cut(s)	1045, 1163, 1301, 1626, 1800, 2208
PspPPI	RGGWCCY	1 cut(s)	1800
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	1263
PvuII	CAGCTG	1 cut(s)	2165
RruI	TCGCGA	1 cut(s)	2226
RseI	CAYNNNNRTG	5 cut(s)	107, 764, 1617, 2045, 2309
SacI	GAGCTC	1 cut(s)	858
SaqAI	TTAA	4 cut(s)	219, 509, 812, 1275
SatI	GCNGC	4 cut(s)	1004, 1545, 1878, 2345
Sau96I	GGNCC	6 cut(s)	1045, 1163, 1301, 1626, 1800, 2208
SchI	GAGTC	5 cut(s)	481, 971, 1031, 1135, 1457
ScrFI	CCNGG	5 cut(s)	773, 803, 961, 995, 2198
SduI	GDGCHC	4 cut(s)	396, 858, 1260, 1946
SexAI	ACCWGGT	1 cut(s)	993
SfaNI	GCATC	6 cut(s)	460, 1231, 1320, 1692, 2273, 2379
SfoI	GGCGCC	1 cut(s)	1675
Sfr274I	CTCGAG	1 cut(s)	1259
SinI	GGWCC	2 cut(s)	1045, 1800
SlaI	CTCGAG	1 cut(s)	1259
SmiMI	CAYNNNNRTG	5 cut(s)	107, 764, 1617, 2045, 2309
SmlI	CTYRAG	1 cut(s)	1259
SmoI	CTYRAG	1 cut(s)	1259
SnaBI	TACGTA	2 cut(s)	315, 904
SsiI	CCGC	5 cut(s)	467, 1113, 1440, 1587, 2345
SspDI	GGCGCC	1 cut(s)	1673
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	8 cut(s)	267, 1041, 1295, 1389, 1473, 1958, 2481, 2526
SstI	GAGCTC	1 cut(s)	858
StyD4I	CCNGG	5 cut(s)	771, 801, 959, 993, 2196
StyI	CCWWGG	3 cut(s)	1040, 1844, 1977
TaaI	ACNGT	9 cut(s)	28, 131, 198, 294, 436, 1503, 1568, 1931, 2434
TaiI	ACGT	8 cut(s)	317, 729, 906, 1101, 1602, 1798, 1938, 2118
TaqI	TCGA	7 cut(s)	390, 718, 1020, 1260, 1560, 2188, 2281
TaqII	GACCGA	3 cut(s)	413, 903, 1062
TatI	WGTACW	2 cut(s)	1602, 2118
TauI	GCSGC	1 cut(s)	2347
TfiI	GAWTC	4 cut(s)	720, 822, 1220, 2507
Tru1I	TTAA	4 cut(s)	219, 509, 812, 1275
Tru9I	TTAA	4 cut(s)	219, 509, 812, 1275
TscAI	CASTG	5 cut(s)	340, 703, 708, 876, 1533
TseFI	GTSAC	5 cut(s)	415, 1195, 1808, 1931, 2167
TseI	GCWGC	3 cut(s)	1003, 1544, 1877
Tsp45I	GTSAC	5 cut(s)	415, 1195, 1808, 1931, 2167
TspDTI	ATGAA	7 cut(s)	32, 340, 537, 768, 1675, 2439, 2481
TspGWI	ACGGA	2 cut(s)	606, 1547
TspRI	CASTG	5 cut(s)	340, 703, 708, 876, 1533
Van91I	CCANNNNNTGG	1 cut(s)	1729
VpaK11BI	GGWCC	2 cut(s)	1045, 1800
XapI	RAATTY	4 cut(s)	308, 500, 1555, 2257
XceI	RCATGY	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1842
XhoI	CTCGAG	1 cut(s)	1259
XmaJI	CCTAGG	1 cut(s)	1040
XmiI	GTMKAC	3 cut(s)	431, 1134, 1152
XspI	CTAG	8 cut(s)	267, 1041, 1295, 1389, 1473, 1958, 2481, 2526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.