Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003017

Physical Location & Seq

Genomic Coordinates Reverse (-)

1081205 .. 1084519

Gene Structure 3315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGAGAATCCTCCAATCCATTACTAGTCAGTGTCGGCCGGCGCTGCGAGCTCTGGGACGGCGGTACTTTGCGGCGGCGGCGACGACAGAGGAATACGCGAAGAGGAACTACGCCAACAACGTGTCGGAGTACAACAGCGTGTTCAATTCCCTCACTGCTCAGAGGAAGCATTTCCTGCTGAGGGATGCGTATGAGGATATGATGCTCGACGGCGTCCAGCCTGACCAGGACAGCTTCCGGTCGCTCATACTGGGCACCCTCAAAGGCTCGAGCTTGCAGGACGCTTTCTTCTTCGCTGACCAGATGAAATCCATGGGCTTGGCCCCTGATGTTAATATGTACAACATATTGATCACATTGTGTGGGAAGTGCAAGCACTCTGATCAAGCGATTCAGATTTTGGAAGACATGAAGAACTATGAAGTGTCACCCAAGGTACAGACCTACATGTGTCTGCTCAATGCGTGCGCAGCTACTGGCCGATTAGATCGAGTGTATGCAATTGTCCGTGACATGACTGCTGCTGGTCTTGGGCTAAACAGGTTCTGCTACGCTGGACTTGTAACTGCACTTAGGAACAAAACCCCTTTACCAGATGATTTCGGCACCAAAATTATAGAGTTTGTTGAGCGATCAAAAGAGTGGTCATCGGTTGAAGGATCAAGTATGACTGCTGCAAATGTGATGATGGGTGTGACGGAAGAAGAGTTGTATATTATGCCAACTGCTGAATATTCTCATAGGGGTGGGTTTCTGAATAGGCAACTAACCGTTTATCATGCTGCGTTCCATGCTTGCGCAGACCTCAGGAATGTAGAGGTGATGGAAACTCTTCAGGAGATGCTAGCGAAGGAAGGAAAAAGTCCCGATCTGTTTATTGTGTTGCAAATAATGAGGTGTTATCTACACTCAGGGGACATTGACCATGGTGTTCAAACTTTTGAAGACTATATGAAGTCAGGAAAGCCTCCTGTAGTAGAACTATATACAACGCTTGTGGAGGGAGCCATGATTGGATATACTCCCAAGGGAATGAAAATTGCCGAAGAGACACTGGTGAATATGAATTCCCGGAGCTTCTTCTTAAGTCCAAAAATGGGGAGTGACCTTCTCCTTCAAGCTGCTGGTGACGAGACTGGAGGTTATAGTGTTGCCAACTATATCTGGGACCTGATGGAAGCGCGTAAAATAGTTCCTCAATTCCTTTCGGTAGAAGCATATTACAAGGGATTAAAAAAACGTGAGATTCCTGAAGATGATCCACGACTGCAACATGTTACGAGGACATACAATGACCTTCGCGCCAGAAGGGGCCCTGGACAAGCTATTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

445

Amino Acids

50.01

Weight (kDa)

6.29

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	63 - 181	1.9e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	100 - 156	6.2e-11	Pentatricopeptide repeat domain
PPR_2	PF13041	109 - 157	9.7e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35850
fragaria_vesca	FvH4_6g51990
malus_domestica	MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1
prunus_persica	Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1
pyrus_communis	pycom111g01770 pycom17g01800
rosa_chinensis	RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191
rosa_laevigata	RLG00000022192
rosa_multiflora	Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039
rosa_roxburghii	Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510
rosa_rugosa	Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700
rosa_samantha	Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100
rosa_wichuraiana	Rw2G053290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	469, 799
AccB1I	GGYRCC	2 cut(s)	254, 605
AccII	CGCG	3 cut(s)	98, 1183, 1302
AciI	CCGC	4 cut(s)	61, 71, 74, 77
AclWI	GGATC	2 cut(s)	667, 1253
AcoI	YGGCCR	2 cut(s)	35, 478
AcsI	RAATTY	1 cut(s)	1066
AcuI	CTGAAG	2 cut(s)	818, 1272
AcyI	GRCGYC	1 cut(s)	213
AdeI	CACNNNGTG	1 cut(s)	360
AfaI	GTAC	4 cut(s)	65, 131, 341, 438
AfiI	CCNNNNNNNGG	2 cut(s)	181, 1097
AflII	CTTAAG	1 cut(s)	1084
AflIII	ACRYGT	3 cut(s)	120, 447, 1273
AgsI	TTSAA	5 cut(s)	145, 656, 935, 944, 1118
AhlI	ACTAGT	1 cut(s)	23
AjnI	CCWGG	2 cut(s)	225, 1315
AluBI	AGCT	7 cut(s)	50, 234, 273, 473, 1077, 1121, 1325
AluI	AGCT	7 cut(s)	50, 234, 273, 473, 1077, 1121, 1325
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	2 cut(s)	1043, 1127
AlwI	GGATC	2 cut(s)	667, 1253
AlwNI	CAGNNNCTG	2 cut(s)	476, 546
Ama87I	CYCGRG	1 cut(s)	268
AoxI	GGCC	4 cut(s)	35, 321, 478, 1312
ApaI	GGGCCC	1 cut(s)	1316
ApeKI	GCWGC	6 cut(s)	43, 470, 521, 674, 782, 1121
ApoI	RAATTY	1 cut(s)	1066
ArsI	GACNNNNNNTTYG	2 cut(s)	629, 661
Asp700I	GAANNNNTTC	2 cut(s)	170, 831
AspLEI	GCGC	5 cut(s)	43, 470, 800, 1183, 1304
AspS9I	GGNCC	4 cut(s)	322, 1168, 1312, 1313
AsuC2I	CCSGG	1 cut(s)	1072
AsuHPI	GGTGA	4 cut(s)	420, 832, 1069, 1139
AsuNHI	GCTAGC	1 cut(s)	844
AvaI	CYCGRG	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	1168
AxyI	CCTNAGG	1 cut(s)	806
BaeGI	GKGCMC	2 cut(s)	257, 1316
BanI	GGYRCC	2 cut(s)	254, 605
BanII	GRGCYC	2 cut(s)	52, 1316
BarI	GAAGNNNNNNTAC	2 cut(s)	92, 124
BbsI	GAAGAC	2 cut(s)	411, 951
Bbv12I	GWGCWC	1 cut(s)	52
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	6 cut(s)	30, 482, 508, 661, 769, 1108
BccI	CCATC	3 cut(s)	682, 817, 1168
BceAI	ACGGC	2 cut(s)	74, 226
BciT130I	CCWGG	2 cut(s)	227, 1317
BclI	TGATCA	2 cut(s)	351, 382
BcnI	CCSGG	1 cut(s)	1072
BcoDI	GTCTC	2 cut(s)	1043, 1127
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	2 cut(s)	24, 845
BfmI	CTRYAG	1 cut(s)	972
BfoI	RGCGCY	1 cut(s)	44
BfrI	CTTAAG	1 cut(s)	1084
BisI	GCNGC	9 cut(s)	44, 72, 75, 78, 471, 522, 675, 783, 1122
BlsI	GCNGC	9 cut(s)	45, 73, 76, 79, 472, 523, 676, 784, 1123
Bme1390I	CCNGG	3 cut(s)	227, 1072, 1317
Bme18I	GGWCC	1 cut(s)	1168
BmeT110I	CYCGRG	1 cut(s)	268
BmgT120I	GGNCC	4 cut(s)	322, 1168, 1312, 1313
BmiI	GGNNCC	7 cut(s)	256, 324, 607, 1006, 1169, 1313, 1314
BmrFI	CCNGG	3 cut(s)	227, 1072, 1317
BmrI	ACTGGG	1 cut(s)	260
BmsI	GCATC	3 cut(s)	175, 192, 831
BmtI	GCTAGC	1 cut(s)	848
BmuI	ACTGGG	1 cut(s)	260
BpiI	GAAGAC	2 cut(s)	411, 951
BpmI	CTGGAG	1 cut(s)	1158
Bpu10I	CCTNAGC	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	1072
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	5 cut(s)	312, 432, 925, 1026, 1315
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 1097
Bse118I	RCCGGY	1 cut(s)	37
Bse1I	ACTGG	4 cut(s)	255, 481, 1059, 1141
Bse21I	CCTNAGG	1 cut(s)	806
BseBI	CCWGG	2 cut(s)	227, 1317
BseDI	CCNNGG	5 cut(s)	312, 432, 925, 1026, 1315
BseGI	GGATG	1 cut(s)	190
BseLI	CCNNNNNNNGG	2 cut(s)	181, 1097
BseMII	CTCAG	4 cut(s)	170, 173, 820, 924
BseNI	ACTGG	4 cut(s)	255, 481, 1059, 1141
BseSI	GKGCMC	2 cut(s)	257, 1316
BseX3I	CGGCCG	1 cut(s)	35
BseXI	GCAGC	6 cut(s)	30, 482, 508, 661, 769, 1108
BsgI	GTGCAG	1 cut(s)	552
Bsh1236I	CGCG	3 cut(s)	98, 1183, 1302
Bsh1285I	CGRYCG	2 cut(s)	38, 242
BshFI	GGCC	4 cut(s)	37, 323, 480, 1314
BshNI	GGYRCC	2 cut(s)	254, 605
BsiEI	CGRYCG	2 cut(s)	38, 242
BsiHKAI	GWGCWC	1 cut(s)	52
BsiHKCI	CYCGRG	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	38, 238, 1072
BslFI	GGGAC	4 cut(s)	69, 849, 929, 1181
BslI	CCNNNNNNNGG	2 cut(s)	181, 1097
BsmAI	GTCTC	2 cut(s)	1043, 1127
BsmFI	GGGAC	4 cut(s)	69, 849, 929, 1181
BsnI	GGCC	4 cut(s)	37, 323, 480, 1314
BsoBI	CYCGRG	1 cut(s)	268
Bsp120I	GGGCCC	1 cut(s)	1312
Bsp1286I	GDGCHC	3 cut(s)	52, 257, 1316
Bsp1407I	TGTACA	1 cut(s)	339
Bsp143I	GATC	7 cut(s)	351, 382, 487, 632, 659, 868, 1258
Bsp19I	CCATGG	2 cut(s)	312, 925
BspACI	CCGC	4 cut(s)	61, 71, 74, 77
BspANI	GGCC	4 cut(s)	37, 323, 480, 1314
BspCNI	CTCAG	4 cut(s)	171, 172, 819, 923
BspFNI	CGCG	3 cut(s)	98, 1183, 1302
BspLI	GGNNCC	7 cut(s)	256, 324, 607, 1006, 1169, 1313, 1314
BspOI	GCTAGC	1 cut(s)	848
BspPI	GGATC	2 cut(s)	667, 1253
BspT107I	GGYRCC	2 cut(s)	254, 605
BspTI	CTTAAG	1 cut(s)	1084
BsrFI	RCCGGY	1 cut(s)	37
BsrGI	TGTACA	1 cut(s)	339
BsrI	ACTGG	4 cut(s)	255, 481, 1059, 1141
BssAI	RCCGGY	1 cut(s)	37
BssECI	CCNNGG	5 cut(s)	312, 432, 925, 1026, 1315
BssMI	GATC	7 cut(s)	351, 382, 487, 632, 659, 868, 1258
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	4 cut(s)	312, 432, 925, 1026
Bst2UI	CCWGG	2 cut(s)	227, 1317
Bst4CI	ACNGT	1 cut(s)	772
Bst6I	CTCTTC	4 cut(s)	95, 699, 837, 1041
BstACI	GRCGYC	1 cut(s)	213
BstAFI	CTTAAG	1 cut(s)	1084
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstAUI	TGTACA	1 cut(s)	339
BstC8I	GCNNGC	7 cut(s)	39, 48, 275, 374, 466, 796, 846
BstDEI	CTNAG	5 cut(s)	159, 179, 572, 806, 910
BstDSI	CCRYGG	2 cut(s)	312, 925
BstF5I	GGATG	1 cut(s)	190
BstFNI	CGCG	3 cut(s)	98, 1183, 1302
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	5 cut(s)	43, 470, 800, 1183, 1304
BstKTI	GATC	7 cut(s)	354, 385, 490, 635, 662, 871, 1261
BstMAI	GTCTC	2 cut(s)	1043, 1127
BstMBI	GATC	7 cut(s)	351, 382, 487, 632, 659, 868, 1258
BstMCI	CGRYCG	2 cut(s)	38, 242
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 47, 77, 175, 470, 791
BstNI	CCWGG	2 cut(s)	227, 1317
BstNSI	RCATGY	2 cut(s)	451, 1277
BstSCI	CCNGG	3 cut(s)	225, 1070, 1315
BstSFI	CTRYAG	1 cut(s)	972
BstSLI	GKGCMC	2 cut(s)	257, 1316
BstUI	CGCG	3 cut(s)	98, 1183, 1302
BstV1I	GCAGC	6 cut(s)	30, 482, 508, 661, 769, 1108
BstV2I	GAAGAC	2 cut(s)	411, 951
BstXI	CCANNNNNNTGG	1 cut(s)	319
BstZI	CGGCCG	1 cut(s)	35
Bsu36I	CCTNAGG	1 cut(s)	806
BsuRI	GGCC	4 cut(s)	37, 323, 480, 1314
BtgI	CCRYGG	2 cut(s)	312, 925
BtsCI	GGATG	1 cut(s)	190
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	3 cut(s)	35, 153, 1052
Cac8I	GCNNGC	7 cut(s)	39, 48, 275, 374, 466, 796, 846
CaiI	CAGNNNCTG	2 cut(s)	476, 546
CfoI	GCGC	5 cut(s)	43, 470, 800, 1183, 1304
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	4 cut(s)	322, 1168, 1312, 1313
CseI	GACGC	2 cut(s)	202, 290
Csp6I	GTAC	4 cut(s)	64, 130, 340, 437
CspCI	CAANNNNNGTGG	2 cut(s)	978, 1013
CviAII	CATG	9 cut(s)	313, 409, 448, 514, 779, 791, 926, 1009, 1274
CviQI	GTAC	4 cut(s)	64, 130, 340, 437
DdeI	CTNAG	5 cut(s)	159, 179, 572, 806, 910
DpnI	GATC	7 cut(s)	353, 384, 489, 634, 661, 870, 1260
DpnII	GATC	7 cut(s)	351, 382, 487, 632, 659, 868, 1258
DraIII	CACNNNGTG	1 cut(s)	360
EaeI	YGGCCR	2 cut(s)	35, 478
EagI	CGGCCG	1 cut(s)	35
Eam1104I	CTCTTC	4 cut(s)	95, 699, 837, 1041
EarI	CTCTTC	4 cut(s)	95, 699, 837, 1041
Ecl136II	GAGCTC	1 cut(s)	50
EclXI	CGGCCG	1 cut(s)	35
Eco130I	CCWWGG	4 cut(s)	312, 432, 925, 1026
Eco24I	GRGCYC	2 cut(s)	52, 1316
Eco47I	GGWCC	1 cut(s)	1168
Eco52I	CGGCCG	1 cut(s)	35
Eco53kI	GAGCTC	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	818, 1272
Eco81I	CCTNAGG	1 cut(s)	806
Eco88I	CYCGRG	1 cut(s)	268
EcoICRI	GAGCTC	1 cut(s)	50
EcoO109I	RGGNCCY	3 cut(s)	1168, 1312, 1313
EcoRI	GAATTC	1 cut(s)	1066
EcoRII	CCWGG	2 cut(s)	225, 1315
EcoT14I	CCWWGG	4 cut(s)	312, 432, 925, 1026
EcoT38I	GRGCYC	2 cut(s)	52, 1316
ErhI	CCWWGG	4 cut(s)	312, 432, 925, 1026
FaeI	CATG	9 cut(s)	316, 412, 451, 517, 782, 794, 929, 1012, 1277
FaqI	GGGAC	4 cut(s)	69, 849, 929, 1181
FatI	CATG	9 cut(s)	312, 408, 447, 513, 778, 790, 925, 1008, 1273
FbaI	TGATCA	2 cut(s)	351, 382
Fnu4HI	GCNGC	9 cut(s)	44, 72, 75, 78, 471, 522, 675, 783, 1122
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	2 cut(s)	52, 1316
Fsp4HI	GCNGC	9 cut(s)	44, 72, 75, 78, 471, 522, 675, 783, 1122
FspBI	CTAG	2 cut(s)	24, 845
FspI	TGCGCA	2 cut(s)	469, 799
GlaI	GCGC	5 cut(s)	42, 469, 799, 1182, 1303
GluI	GCNGC	9 cut(s)	44, 72, 75, 78, 471, 522, 675, 783, 1122
GsuI	CTGGAG	1 cut(s)	1158
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	4 cut(s)	37, 323, 480, 1314
HapII	CCGG	3 cut(s)	38, 238, 1072
HgaI	GACGC	2 cut(s)	202, 290
HhaI	GCGC	5 cut(s)	43, 470, 800, 1183, 1304
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	9 cut(s)	316, 412, 451, 517, 782, 794, 929, 1012, 1277
Hin6I	GCGC	5 cut(s)	41, 468, 798, 1181, 1302
HinP1I	GCGC	5 cut(s)	41, 468, 798, 1181, 1302
HinfI	GANTC	3 cut(s)	6, 391, 1246
HpaII	CCGG	3 cut(s)	38, 238, 1072
HphI	GGTGA	4 cut(s)	420, 832, 1069, 1139
Hpy188I	TCNGA	5 cut(s)	127, 162, 382, 396, 756
Hpy188III	TCNNGA	5 cut(s)	808, 836, 866, 960, 1250
Hpy99I	CGWCG	2 cut(s)	85, 212
HpyAV	CCTTC	7 cut(s)	650, 844, 848, 1118, 1124, 1302, 1307
HpyCH4III	ACNGT	1 cut(s)	772
HpyCH4IV	ACGT	2 cut(s)	120, 1240
HpyCH4V	TGCA	7 cut(s)	277, 372, 500, 569, 677, 886, 1270
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 47, 77, 175, 470, 791
HpyF3I	CTNAG	5 cut(s)	159, 179, 572, 806, 910
HpySE526I	ACGT	2 cut(s)	120, 1240
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	9 cut(s)	316, 412, 451, 517, 782, 794, 929, 1012, 1277
HspAI	GCGC	5 cut(s)	41, 468, 798, 1181, 1302
KroI	GCCGGC	1 cut(s)	37
KroNI	GCCGGC	1 cut(s)	39
Ksp22I	TGATCA	2 cut(s)	351, 382
Kzo9I	GATC	7 cut(s)	351, 382, 487, 632, 659, 868, 1258
LmnI	GCTCC	2 cut(s)	1004, 1074
Lsp1109I	GCAGC	6 cut(s)	30, 482, 508, 661, 769, 1108
LweI	GCATC	3 cut(s)	175, 192, 831
MaeI	CTAG	2 cut(s)	24, 845
MaeII	ACGT	2 cut(s)	120, 1240
MaeIII	GTNAC	7 cut(s)	426, 509, 562, 694, 1103, 1127, 1276
MalI	GATC	7 cut(s)	353, 384, 489, 634, 661, 870, 1260
MboI	GATC	7 cut(s)	351, 382, 487, 632, 659, 868, 1258
MfeI	CAATTG	1 cut(s)	501
MhlI	GDGCHC	3 cut(s)	52, 257, 1316
MluCI	AATT	6 cut(s)	145, 501, 612, 1038, 1066, 1199
MmeI	TCCRAC	1 cut(s)	105
MroNI	GCCGGC	1 cut(s)	37
MroXI	GAANNNNTTC	2 cut(s)	170, 831
MseI	TTAA	3 cut(s)	333, 1085, 1232
MslI	CAYNNNNRTG	1 cut(s)	744
MspCI	CTTAAG	1 cut(s)	1084
MspI	CCGG	3 cut(s)	38, 238, 1072
MspR9I	CCNGG	3 cut(s)	227, 1072, 1317
MunI	CAATTG	1 cut(s)	501
MvaI	CCWGG	2 cut(s)	227, 1317
MvnI	CGCG	3 cut(s)	98, 1183, 1302
MwoI	GCNNNNNNNGC	6 cut(s)	43, 47, 77, 175, 470, 791
NaeI	GCCGGC	1 cut(s)	39
NciI	CCSGG	1 cut(s)	1072
NcoI	CCATGG	2 cut(s)	312, 925
NdeII	GATC	7 cut(s)	351, 382, 487, 632, 659, 868, 1258
NgoMIV	GCCGGC	1 cut(s)	37
NheI	GCTAGC	1 cut(s)	844
NlaIII	CATG	9 cut(s)	316, 412, 451, 517, 782, 794, 929, 1012, 1277
NlaIV	GGNNCC	7 cut(s)	256, 324, 607, 1006, 1169, 1313, 1314
NmuCI	GTSAC	5 cut(s)	426, 509, 694, 1103, 1127
NsbI	TGCGCA	2 cut(s)	469, 799
NspI	RCATGY	2 cut(s)	451, 1277
PaeR7I	CTCGAG	1 cut(s)	268
PciI	ACATGT	2 cut(s)	447, 1273
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PdiI	GCCGGC	1 cut(s)	39
PdmI	GAANNNNTTC	2 cut(s)	170, 831
PfeI	GAWTC	3 cut(s)	6, 391, 1246
PflFI	GACNNNGTC	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	1070
PkrI	GCNGC	9 cut(s)	45, 73, 76, 79, 472, 523, 676, 784, 1123
PpuMI	RGGWCCY	1 cut(s)	1168
PscI	ACATGT	2 cut(s)	447, 1273
Psp124BI	GAGCTC	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	1168
Psp6I	CCWGG	2 cut(s)	225, 1315
PspGI	CCWGG	2 cut(s)	225, 1315
PspN4I	GGNNCC	7 cut(s)	256, 324, 607, 1006, 1169, 1313, 1314
PspOMI	GGGCCC	1 cut(s)	1312
PspPI	GGNCC	4 cut(s)	322, 1168, 1312, 1313
PspPPI	RGGWCCY	1 cut(s)	1168
PspXI	VCTCGAGB	1 cut(s)	268
PstNI	CAGNNNCTG	2 cut(s)	476, 546
PsyI	GACNNNGTC	1 cut(s)	212
RsaI	GTAC	4 cut(s)	65, 131, 341, 438
RsaNI	GTAC	4 cut(s)	64, 130, 340, 437
RseI	CAYNNNNRTG	1 cut(s)	744
SacI	GAGCTC	1 cut(s)	52
SaqAI	TTAA	3 cut(s)	333, 1085, 1232
SatI	GCNGC	9 cut(s)	44, 72, 75, 78, 471, 522, 675, 783, 1122
Sau3AI	GATC	7 cut(s)	351, 382, 487, 632, 659, 868, 1258
Sau96I	GGNCC	4 cut(s)	322, 1168, 1312, 1313
ScrFI	CCNGG	3 cut(s)	227, 1072, 1317
SduI	GDGCHC	3 cut(s)	52, 257, 1316
SfaNI	GCATC	3 cut(s)	175, 192, 831
SfcI	CTRYAG	1 cut(s)	972
Sfr274I	CTCGAG	1 cut(s)	268
SinI	GGWCC	1 cut(s)	1168
SlaI	CTCGAG	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	744
SmlI	CTYRAG	2 cut(s)	268, 1084
SmoI	CTYRAG	2 cut(s)	268, 1084
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	6 cut(s)	145, 501, 612, 1038, 1066, 1199
SsiI	CCGC	4 cut(s)	61, 71, 74, 77
SspI	AATATT	1 cut(s)	734
SspMI	CTAG	2 cut(s)	24, 845
SstI	GAGCTC	1 cut(s)	52
StyD4I	CCNGG	3 cut(s)	225, 1070, 1315
StyI	CCWWGG	4 cut(s)	312, 432, 925, 1026
TaaI	ACNGT	1 cut(s)	772
TaiI	ACGT	2 cut(s)	123, 1243
TaqI	TCGA	3 cut(s)	207, 269, 490
TasI	AATT	6 cut(s)	145, 501, 612, 1038, 1066, 1199
TatI	WGTACW	2 cut(s)	129, 339
TauI	GCSGC	3 cut(s)	74, 77, 80
TfiI	GAWTC	3 cut(s)	6, 391, 1246
Tru1I	TTAA	3 cut(s)	333, 1085, 1232
Tru9I	TTAA	3 cut(s)	333, 1085, 1232
TscAI	CASTG	3 cut(s)	35, 160, 1059
TseFI	GTSAC	5 cut(s)	426, 509, 694, 1103, 1127
TseI	GCWGC	6 cut(s)	43, 470, 521, 674, 782, 1121
Tsp45I	GTSAC	5 cut(s)	426, 509, 694, 1103, 1127
TspDTI	ATGAA	6 cut(s)	320, 425, 435, 968, 1049, 1079
TspGWI	ACGGA	2 cut(s)	497, 713
TspRI	CASTG	3 cut(s)	35, 160, 1059
Tth111I	GACNNNGTC	1 cut(s)	212
Vha464I	CTTAAG	1 cut(s)	1084
VpaK11BI	GGWCC	1 cut(s)	1168
XapI	RAATTY	1 cut(s)	1066
XceI	RCATGY	2 cut(s)	451, 1277
XhoI	CTCGAG	1 cut(s)	268
XmnI	GAANNNNTTC	2 cut(s)	170, 831
XspI	CTAG	2 cut(s)	24, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.