Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003017

Physical Location & Seq

Genomic Coordinates Forward (+)

2386782 .. 2390696

Gene Structure 3915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00079350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCGTATTGGAATTAACAATGCGATCTGCATCTGCTGGTATGCAATTGTCCGCGACATGACTGCTGCTGGTCTTGGGTTAAATAAGTTTTGCTATGCGGGACTTATAACTGCACTTAGGAACAAGACACCCTTACCAGATGATTATGCTGCCAAATCTATAGAGTTTGTGGAGCGGTCAAAAGAGTGGTCATCGGTTGAAGCTTCAAGTGAAACCGCTCAAAATGTAATGACGGGGGTAACAGAAGCGGAGTTGTATAACATGCCAACAGCTGAGTATGTTAATAGGCGTGGATTTTTTAATAGGCCGCTAACTGTGTATCATGTTGCATTTCATGCTTGTGCGGACCTACGAAATGTTGAGGTGATGGAAGCTCTTTTGGACATGCTAAAAAAGGATGGGAAATTTCCAGATACCTATATTGTGATTCAAACTATGAGATGCTACTTGAACTGCGGGGATGTTGATCGTGGTTGGCAAACGCTTGATGAATATCTGAAGTCAGGAAGGCCTCCTGTACCAGAACTCTATAGTGAAGATATGAATTCCAGGAACTTTTACTTGCTCCTCCCAAGACAAGGGACTGATCTTCTCCTTGCAGCTGCCGGTGAAAAGACTGGAGGTTATACTGCCGCAAACCATATATGGGACTTGATGCAAGCTCGTAAAGTAACTCCTCAACTTCCTGCAGTGGAAGCATATTACAATGGCTTGAAAGAACGTGAGATTCCCGCTGACGATCCACGACTTGTATTGGTTAAGCGTACTTATGAAAACCTTTCTTCGAGATTCAGAGGACGACGACCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

270

Amino Acids

30.67

Weight (kDa)

6.84

Isoelectric Point (pI)

39.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35850
fragaria_vesca	FvH4_6g51990
malus_domestica	MD09G1021100.v1.1 MD09G1021300.v1.1 MD17G1021300.v1.1
prunus_persica	Prupe.3G295200_v2.0.a1 Prupe.3G295200_v2.0.a1
pyrus_communis	pycom111g01770 pycom17g01800
rosa_chinensis	RchiOBHm_Chr2g0173461 RchiOBHm_Chr6g0291191
rosa_laevigata	RLG00000022192
rosa_multiflora	Rmu_sc0000580.1_g000120 Rmu_sc0015463.1_g000007 Rmu_sc0028728.1_g000001 Rmu_ssc0000467.1_g000039
rosa_roxburghii	Rroxscaffold_2G00078830 Rroxscaffold_2G00079350 Rroxscaffold_2G00084510
rosa_rugosa	Rorug02G0525500 Rorug02G0568900 Rorug02G0569200 Rorug02G0569500 Rorug02G0570700
rosa_samantha	Rh2AG521200 Rh2AG649100 Rh2BG659700 Rh2CG574600 Rh2CG624900 Rh2DG674800 Rh3DG228100 Rh4CG014600 Rh4CG314700 Rh4DG296000 Rh6AG277500 Rh6AG329100 Rh7BG450100
rosa_wichuraiana	Rw2G053290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	107
AccBSI	CCGCTC	2 cut(s)	175, 218
AccII	CGCG	1 cut(s)	54
AclWI	GGATC	1 cut(s)	734
AcsI	RAATTY	2 cut(s)	404, 544
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	2 cut(s)	519, 766
AfiI	CCNNNNNNNGG	2 cut(s)	578, 646
AgsI	TTSAA	5 cut(s)	200, 207, 431, 451, 715
AjnI	CCWGG	1 cut(s)	548
AluBI	AGCT	5 cut(s)	203, 272, 374, 602, 662
AluI	AGCT	5 cut(s)	203, 272, 374, 602, 662
AlwI	GGATC	1 cut(s)	734
AoxI	GGCC	2 cut(s)	305, 509
ApeKI	GCWGC	4 cut(s)	65, 149, 599, 602
ApoI	RAATTY	2 cut(s)	404, 544
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	376, 620
AvaII	GGWCC	1 cut(s)	346
BbvI	GCAGC	4 cut(s)	52, 136, 589, 611
BccI	CCATC	2 cut(s)	361, 392
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	1 cut(s)	550
BfmI	CTRYAG	3 cut(s)	159, 529, 687
BisI	GCNGC	6 cut(s)	66, 150, 308, 600, 603, 633
BlsI	GCNGC	6 cut(s)	67, 151, 309, 601, 604, 634
Bme1390I	CCNGG	1 cut(s)	550
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	3 cut(s)	39, 431, 645
BpmI	CTGGAG	1 cut(s)	639
BsaBI	GATNNNNATC	3 cut(s)	29, 465, 492
Bsc4I	CCNNNNNNNGG	2 cut(s)	578, 646
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	1 cut(s)	622
Bse8I	GATNNNNATC	3 cut(s)	29, 465, 492
BseBI	CCWGG	1 cut(s)	550
BseGI	GGATG	2 cut(s)	403, 466
BseJI	GATNNNNATC	3 cut(s)	29, 465, 492
BseLI	CCNNNNNNNGG	2 cut(s)	578, 646
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	622
BseRI	GAGGAG	2 cut(s)	557, 666
BseXI	GCAGC	4 cut(s)	52, 136, 589, 611
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	307, 511
BsiSI	CCGG	1 cut(s)	606
BslFI	GGGAC	3 cut(s)	114, 595, 662
BslI	CCNNNNNNNGG	2 cut(s)	578, 646
BsmFI	GGGAC	3 cut(s)	114, 595, 662
BsnI	GGCC	2 cut(s)	307, 511
Bsp143I	GATC	4 cut(s)	24, 466, 586, 739
BspANI	GGCC	2 cut(s)	307, 511
BspCNI	CTCAG	1 cut(s)	265
BspFNI	CGCG	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	691
BspPI	GGATC	1 cut(s)	734
BsrBI	CCGCTC	2 cut(s)	175, 218
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	1 cut(s)	622
BssAI	RCCGGY	1 cut(s)	605
BssMI	GATC	4 cut(s)	24, 466, 586, 739
Bst2UI	CCWGG	1 cut(s)	550
Bst4CI	ACNGT	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	660
BstDEI	CTNAG	2 cut(s)	116, 273
BstF5I	GGATG	2 cut(s)	403, 466
BstFNI	CGCG	1 cut(s)	54
BstKTI	GATC	4 cut(s)	27, 469, 589, 742
BstMBI	GATC	4 cut(s)	24, 466, 586, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	335, 695
BstNI	CCWGG	1 cut(s)	550
BstNSI	RCATGY	2 cut(s)	265, 388
BstSCI	CCNGG	1 cut(s)	548
BstSFI	CTRYAG	3 cut(s)	159, 529, 687
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	4 cut(s)	52, 136, 589, 611
BsuRI	GGCC	2 cut(s)	307, 511
BtsCI	GGATG	2 cut(s)	403, 466
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	1 cut(s)	696
Cac8I	GCNNGC	1 cut(s)	660
Cfr10I	RCCGGY	1 cut(s)	605
Cfr13I	GGNCC	1 cut(s)	346
Csp6I	GTAC	2 cut(s)	518, 765
CviAII	CATG	5 cut(s)	58, 262, 323, 335, 385
CviJI	RGCY	8 cut(s)	203, 272, 307, 374, 511, 602, 662, 711
CviKI_1	RGCY	8 cut(s)	203, 272, 307, 374, 511, 602, 662, 711
CviQI	GTAC	2 cut(s)	518, 765
DdeI	CTNAG	2 cut(s)	116, 273
DpnI	GATC	4 cut(s)	26, 468, 588, 741
DpnII	GATC	4 cut(s)	24, 466, 586, 739
Eco147I	AGGCCT	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	548
FaeI	CATG	5 cut(s)	61, 265, 326, 338, 388
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	3 cut(s)	114, 595, 662
FatI	CATG	5 cut(s)	57, 261, 322, 334, 384
FauI	CCCGC	3 cut(s)	91, 449, 739
Fnu4HI	GCNGC	6 cut(s)	66, 150, 308, 600, 603, 633
FokI	GGATG	2 cut(s)	410, 473
Fsp4HI	GCNGC	6 cut(s)	66, 150, 308, 600, 603, 633
GluI	GCNGC	6 cut(s)	66, 150, 308, 600, 603, 633
GsuI	CTGGAG	1 cut(s)	639
HaeIII	GGCC	2 cut(s)	307, 511
HapII	CCGG	1 cut(s)	606
Hin1II	CATG	5 cut(s)	61, 265, 326, 338, 388
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	3 cut(s)	427, 727, 789
HpaII	CCGG	1 cut(s)	606
HphI	GGTGA	2 cut(s)	376, 620
Hpy188I	TCNGA	2 cut(s)	498, 794
Hpy188III	TCNNGA	3 cut(s)	410, 504, 786
Hpy99I	CGWCG	1 cut(s)	804
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	721
HpyCH4V	TGCA	7 cut(s)	30, 44, 113, 329, 599, 658, 689
HpyF10VI	GCNNNNNNNGC	2 cut(s)	335, 695
HpyF3I	CTNAG	2 cut(s)	116, 273
HpySE526I	ACGT	1 cut(s)	721
Hsp92II	CATG	5 cut(s)	61, 265, 326, 338, 388
Kzo9I	GATC	4 cut(s)	24, 466, 586, 739
LmnI	GCTCC	2 cut(s)	172, 570
Lsp1109I	GCAGC	4 cut(s)	52, 136, 589, 611
LweI	GCATC	3 cut(s)	39, 431, 645
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	2 cut(s)	238, 670
MalI	GATC	4 cut(s)	26, 468, 588, 741
MbiI	CCGCTC	2 cut(s)	175, 218
MboI	GATC	4 cut(s)	24, 466, 586, 739
MboII	GAAGA	3 cut(s)	548, 581, 774
MfeI	CAATTG	1 cut(s)	45
MluCI	AATT	5 cut(s)	12, 45, 404, 544, 808
MnlI	CCTC	6 cut(s)	355, 522, 578, 614, 687, 788
MseI	TTAA	6 cut(s)	15, 80, 282, 300, 759, 811
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	3 cut(s)	272, 602, 734
MspI	CCGG	1 cut(s)	606
MspR9I	CCNGG	1 cut(s)	550
MunI	CAATTG	1 cut(s)	45
MvaI	CCWGG	1 cut(s)	550
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	2 cut(s)	335, 695
NdeII	GATC	4 cut(s)	24, 466, 586, 739
NlaIII	CATG	5 cut(s)	61, 265, 326, 338, 388
NspI	RCATGY	2 cut(s)	265, 388
PceI	AGGCCT	1 cut(s)	511
PfeI	GAWTC	3 cut(s)	427, 727, 789
PfoI	TCCNGGA	1 cut(s)	548
PkrI	GCNGC	6 cut(s)	67, 151, 309, 601, 604, 634
PsiI	TTATAA	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	548
PspPI	GGNCC	1 cut(s)	346
PstI	CTGCAG	1 cut(s)	691
PvuII	CAGCTG	2 cut(s)	272, 602
RsaI	GTAC	2 cut(s)	519, 766
RsaNI	GTAC	2 cut(s)	518, 765
RseI	CAYNNNNRTG	1 cut(s)	339
SaqAI	TTAA	6 cut(s)	15, 80, 282, 300, 759, 811
SatI	GCNGC	6 cut(s)	66, 150, 308, 600, 603, 633
Sau3AI	GATC	4 cut(s)	24, 466, 586, 739
Sau96I	GGNCC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	550
SfaNI	GCATC	3 cut(s)	39, 431, 645
SfcI	CTRYAG	3 cut(s)	159, 529, 687
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	339
Sse9I	AATT	5 cut(s)	12, 45, 404, 544, 808
SseBI	AGGCCT	1 cut(s)	511
StuI	AGGCCT	1 cut(s)	511
StyD4I	CCNGG	1 cut(s)	548
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	1 cut(s)	724
TaqI	TCGA	1 cut(s)	785
TasI	AATT	5 cut(s)	12, 45, 404, 544, 808
TauI	GCSGC	2 cut(s)	310, 635
TfiI	GAWTC	3 cut(s)	427, 727, 789
Tru1I	TTAA	6 cut(s)	15, 80, 282, 300, 759, 811
Tru9I	TTAA	6 cut(s)	15, 80, 282, 300, 759, 811
TscAI	CASTG	1 cut(s)	696
TseI	GCWGC	4 cut(s)	65, 149, 599, 602
TspDTI	ATGAA	4 cut(s)	323, 504, 557, 786
TspRI	CASTG	1 cut(s)	696
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	2 cut(s)	404, 544
XceI	RCATGY	2 cut(s)	265, 388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.