Rh2CG574600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003017
Physical Location & Seq
Forward (+)
75419992 .. 75420632
641 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG574600.1

Sequence Viewer

Length: 318 bp
ATGTCGATGGACAGAAATGATTTGAGGGAGGCGTTTAAGATGTACGACATGGTTGGATGTAAGTCTACTCAGCTCCTCCCAGTCGTCTTTTCTGAAACTGGAGATCACCCTGCGTCAACCCGAACCGTCCCTTATCTCGGCCGAAAGCCTTTCCCACGGCCTCTTCCTCACTCCTATGCAGTTCTTCTGCACCGAAACGTTTCCCACTACGGTGGTGATTCCGTCAAGATCCGGAGGCGGTTCGGTTTTGGATTTGGAAACATCATTTTAACTTCAAATGGAGCAAGCGTCATGGCAATGACTTGGTTAATTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.81

Weight (kDa)

10.0

Isoelectric Point (pI)

58.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 65
AccIII TCCGGA 1 cut(s) 231
AciI CCGC 1 cut(s) 238
AclI AACGTT 1 cut(s) 198
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 139
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 137
AgsI TTSAA 1 cut(s) 276
AleI CACNNNNGTG 1 cut(s) 210
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
AlwI GGATC 1 cut(s) 223
Aor13HI TCCGGA 1 cut(s) 231
AoxI GGCC 2 cut(s) 139, 158
Asp700I GAANNNNTTC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 98, 227
BceAI ACGGC 1 cut(s) 173
BmrI ACTGGG 1 cut(s) 74
BmuI ACTGGG 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 155
BsaWI WCCGGW 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse1I ACTGG 2 cut(s) 80, 103
Bse3DI GCAATG 1 cut(s) 303
BseAI TCCGGA 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 80, 103
BseRI GAGGAG 1 cut(s) 65
BseX3I CGGCCG 1 cut(s) 139
BsgI GTGCAG 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 2 cut(s) 141, 160
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 232
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 2 cut(s) 141, 160
Bsp13I TCCGGA 1 cut(s) 231
Bsp143I GATC 2 cut(s) 103, 228
BspACI CCGC 1 cut(s) 238
BspANI GGCC 2 cut(s) 141, 160
BspCNI CTCAG 1 cut(s) 82
BspEI TCCGGA 1 cut(s) 231
BspPI GGATC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 303
BsrI ACTGG 2 cut(s) 80, 103
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 2 cut(s) 103, 228
Bst4CI ACNGT 2 cut(s) 127, 212
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 286
BstDEI CTNAG 1 cut(s) 69
BstDSI CCRYGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 62
BstKTI GATC 2 cut(s) 106, 231
BstMBI GATC 2 cut(s) 103, 228
BstMCI CGRYCG 1 cut(s) 142
BstX2I RGATCY 1 cut(s) 228
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 1 cut(s) 228
BstZI CGGCCG 1 cut(s) 139
BsuRI GGCC 2 cut(s) 141, 160
BtgI CCRYGG 1 cut(s) 155
BtsCI GGATG 1 cut(s) 62
Cac8I GCNNGC 1 cut(s) 286
CseI GACGC 2 cut(s) 102, 277
Csp6I GTAC 1 cut(s) 43
CviAII CATG 2 cut(s) 49, 292
CviJI RGCY 4 cut(s) 73, 141, 148, 160
CviKI_1 RGCY 4 cut(s) 73, 141, 148, 160
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 69
DpnI GATC 2 cut(s) 105, 230
DpnII GATC 2 cut(s) 103, 228
EaeI YGGCCR 1 cut(s) 139
EagI CGGCCG 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
EclXI CGGCCG 1 cut(s) 139
Eco52I CGGCCG 1 cut(s) 139
FaeI CATG 2 cut(s) 52, 295
FaiI YATR 3 cut(s) 50, 177, 293
FaqI GGGAC 1 cut(s) 113
FatI CATG 2 cut(s) 48, 291
FblI GTMKAC 1 cut(s) 65
FokI GGATG 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 2 cut(s) 141, 160
HapII CCGG 1 cut(s) 232
HgaI GACGC 2 cut(s) 102, 277
Hin1II CATG 2 cut(s) 52, 295
HincII GTYRAC 1 cut(s) 117
HindII GTYRAC 1 cut(s) 117
HinfI GANTC 1 cut(s) 218
HpaII CCGG 1 cut(s) 232
HphI GGTGA 2 cut(s) 98, 227
Hpy166II GTNNAC 2 cut(s) 66, 117
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 226, 232
Hpy8I GTNNAC 2 cut(s) 66, 117
HpyCH4III ACNGT 2 cut(s) 127, 212
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 179, 190
HpyF3I CTNAG 1 cut(s) 69
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 2 cut(s) 52, 295
Kpn2I TCCGGA 1 cut(s) 231
Kzo9I GATC 2 cut(s) 103, 228
LmnI GCTCC 2 cut(s) 78, 281
LpnPI CCDG 4 cut(s) 84, 93, 123, 245
MaeII ACGT 1 cut(s) 198
MalI GATC 2 cut(s) 105, 230
MboI GATC 2 cut(s) 103, 228
MboII GAAGA 2 cut(s) 155, 176
MflI RGATCY 1 cut(s) 228
MluCI AATT 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 34
MnlI CCTC 6 cut(s) 18, 22, 86, 171, 177, 228
MroI TCCGGA 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 199
MseI TTAA 3 cut(s) 36, 269, 308
MslI CAYNNNNRTG 3 cut(s) 174, 210, 296
MspI CCGG 1 cut(s) 232
NdeII GATC 2 cut(s) 103, 228
NlaIII CATG 2 cut(s) 52, 295
NmeAIII GCCGAG 1 cut(s) 117
OliI CACNNNNGTG 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 199
PfeI GAWTC 1 cut(s) 218
Psp1406I AACGTT 1 cut(s) 198
PsuI RGATCY 1 cut(s) 228
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 3 cut(s) 174, 210, 296
SaqAI TTAA 3 cut(s) 36, 269, 308
Sau3AI GATC 2 cut(s) 103, 228
SetI ASST 2 cut(s) 75, 201
SmiMI CAYNNNNRTG 3 cut(s) 174, 210, 296
Sse9I AATT 1 cut(s) 309
SsiI CCGC 1 cut(s) 238
TaaI ACNGT 2 cut(s) 127, 212
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 5
TasI AATT 1 cut(s) 309
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 3 cut(s) 36, 269, 308
Tru9I TTAA 3 cut(s) 36, 269, 308
TspGWI ACGGA 1 cut(s) 211
XmiI GTMKAC 1 cut(s) 65
XmnI GAANNNNTTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.