Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Forward (+)

20793160 .. 20794704

Gene Structure 1545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1127700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGGCGACTAAAGATGCAGCTGTTGCTGCAACGGGAACTGTGTTAGGTGATCTTTCTAATCCATTGCTGGTTATACCTCTTAAACCAGTTTCAGTGACTGATGCTCCACCAGTTCAGAGGCCTGAGGAACCTGATCGACTTAACCATTTGGTTGGGACTGGATATCAATCGTTCGAAGATTCTGTTTTGCAGAAACTCAAAAAGGCTGGGCAGAAGCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

75

Amino Acids

7.88

Weight (kDa)

8.06

Isoelectric Point (pI)

37.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	17, 26
AsuHPI	GGTGA	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	174
AxyI	CCTNAGG	1 cut(s)	123
BbvI	GCAGC	2 cut(s)	13, 29
BisI	GCNGC	2 cut(s)	18, 27
BlsI	GCNGC	2 cut(s)	19, 28
BmiI	GGNNCC	1 cut(s)	129
BmsI	GCATC	2 cut(s)	4, 91
Bpu14I	TTCGAA	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bse1I	ACTGG	3 cut(s)	86, 110, 163
Bse21I	CCTNAGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	166
BseJI	GATNNNNATC	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	62
BseMII	CTCAG	1 cut(s)	114
BseNI	ACTGG	3 cut(s)	86, 110, 163
BseXI	GCAGC	2 cut(s)	13, 29
BseYI	CCCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	121
Bsp119I	TTCGAA	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	49, 133
BspANI	GGCC	1 cut(s)	121
BspCNI	CTCAG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	62
BsrI	ACTGG	3 cut(s)	86, 110, 163
BssMI	GATC	2 cut(s)	49, 133
Bst4CI	ACNGT	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstBI	TTCGAA	1 cut(s)	174
BstDEI	CTNAG	1 cut(s)	123
BstKTI	GATC	2 cut(s)	52, 136
BstMBI	GATC	2 cut(s)	49, 133
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 26
BstV1I	GCAGC	2 cut(s)	13, 29
BstXI	CCANNNNNNTGG	1 cut(s)	152
Bsu36I	CCTNAGG	1 cut(s)	123
BsuRI	GGCC	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	99
CaiI	CAGNNNCTG	1 cut(s)	98
CviJI	RGCY	3 cut(s)	20, 121, 206
CviKI_1	RGCY	3 cut(s)	20, 121, 206
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	2 cut(s)	51, 135
DpnII	GATC	2 cut(s)	49, 133
Eco147I	AGGCCT	1 cut(s)	121
Eco32I	GATATC	1 cut(s)	164
Eco81I	CCTNAGG	1 cut(s)	123
EcoRV	GATATC	1 cut(s)	164
FaiI	YATR	1 cut(s)	74
FaqI	GGGAC	1 cut(s)	169
Fnu4HI	GCNGC	2 cut(s)	18, 27
Fsp4HI	GCNGC	2 cut(s)	18, 27
GluI	GCNGC	2 cut(s)	18, 27
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	121
HinfI	GANTC	1 cut(s)	179
HphI	GGTGA	1 cut(s)	59
Hpy188I	TCNGA	1 cut(s)	117
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	3 cut(s)	17, 29, 190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 26
HpyF3I	CTNAG	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	49, 133
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	7 cut(s)	53, 99, 123, 135, 144, 144, 192
Lsp1109I	GCAGC	2 cut(s)	13, 29
LweI	GCATC	2 cut(s)	4, 91
MaeIII	GTNAC	1 cut(s)	94
MalI	GATC	2 cut(s)	51, 135
MboI	GATC	2 cut(s)	49, 133
MboII	GAAGA	1 cut(s)	188
MnlI	CCTC	3 cut(s)	87, 111, 118
MseI	TTAA	2 cut(s)	81, 141
MspA1I	CMGCKG	1 cut(s)	20
MwoI	GCNNNNNNNGC	2 cut(s)	23, 26
NdeII	GATC	2 cut(s)	49, 133
NlaIV	GGNNCC	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	94
NspV	TTCGAA	1 cut(s)	174
PceI	AGGCCT	1 cut(s)	121
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	19, 28
PspFI	CCCAGC	1 cut(s)	206
PspN4I	GGNNCC	1 cut(s)	129
PstNI	CAGNNNCTG	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	81, 141
SatI	GCNGC	2 cut(s)	18, 27
Sau3AI	GATC	2 cut(s)	49, 133
SetI	ASST	4 cut(s)	22, 49, 79, 133
SfaNI	GCATC	2 cut(s)	4, 91
SfuI	TTCGAA	1 cut(s)	174
SgeI	CNNG	8 cut(s)	45, 80, 98, 122, 134, 143, 171, 219
SseBI	AGGCCT	1 cut(s)	121
StuI	AGGCCT	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	136, 174
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	2 cut(s)	81, 141
Tru9I	TTAA	2 cut(s)	81, 141
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	2 cut(s)	17, 26
Tsp45I	GTSAC	1 cut(s)	94
TspRI	CASTG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.