Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Reverse (-)

20518710 .. 20520991

Gene Structure 2282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG181300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGCTTCTTCGACACCGCCAACGGCGTCTATGCCATCGCCTGGTCTGAATCTCCGTCAAGCTCTAAAACCTTGCCCTCTCGCCGACCTGCAACCTCCTCCGCTCCCTCCACGAGCACGCCCGAGGTTAGCTCCTCTGACTACAACCCCACGCACCGCTACTCGTTTCTCACGAGTCGCATGGGACGACACCGTGAAGCTCTGGACCGTTGACCGTCCCGCCTCCGTCAGCACGTTCAAGGAGCACGCCTACTGCGTCTACTCCATCGTCTTTGGTGTGAAAAGCTCGGAATCTCGTTCCAGTCGTCAATGGAGGCCTCCAAGACCTCCAGTTGCTTCAACAAGAACTTTGACTGGTGACCTTTCCAATCCATTGTTGGTTAAACCTCTTCAACCAGTTGTTGCGCCAGTGGCTCCAGTAGCTCAGAAATCTGATGCACCTGATCGTCTTAATAATTTAGTTGGCGCTGGGTATCAATCATTTGAGAATGCTGTTTTGAAGAAACTTGCACAGGGAACTGCTGTGGAGTTTCTCTCTCAACTATCTCAAGATAGCGCAGAGGAAGAACTCTTGGTGTTAATAGTGTTGAATAGTATTAGATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

201

Amino Acids

21.88

Weight (kDa)

9.87

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
AccB7I	CCANNNNNTGG	1 cut(s)	41
AccBSI	CCGCTC	1 cut(s)	103
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	4 cut(s)	17, 101, 156, 219
AcyI	GRCGYC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	41
AgsI	TTSAA	5 cut(s)	238, 339, 392, 499, 589
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	5 cut(s)	62, 131, 199, 285, 422
AluI	AGCT	5 cut(s)	62, 131, 199, 285, 422
Alw21I	GWGCWC	2 cut(s)	118, 246
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	1 cut(s)	314
AspLEI	GCGC	3 cut(s)	406, 467, 557
AspS9I	GGNCC	1 cut(s)	204
AsuHPI	GGTGA	1 cut(s)	368
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	204
BauI	CACGAG	2 cut(s)	111, 171
Bbv12I	GWGCWC	2 cut(s)	118, 246
BccI	CCATC	2 cut(s)	43, 272
BceAI	ACGGC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	42
BfaI	CTAG	1 cut(s)	604
BfoI	RGCGCY	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	424
BplI	GAGNNNNNCTC	4 cut(s)	115, 147, 518, 550
BpmI	CTGGAG	2 cut(s)	312, 399
BpuEI	CTTGAG	1 cut(s)	531
BsaHI	GRCGYC	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	6 cut(s)	300, 329, 358, 395, 407, 416
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	437
BseNI	ACTGG	6 cut(s)	300, 329, 358, 395, 407, 416
BseRI	GAGGAG	2 cut(s)	87, 123
BseYI	CCCAGC	1 cut(s)	467
BshFI	GGCC	1 cut(s)	316
BsiHKAI	GWGCWC	2 cut(s)	118, 246
BsiHKCI	CYCGRG	1 cut(s)	121
BslFI	GGGAC	2 cut(s)	197, 201
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmFI	GGGAC	2 cut(s)	197, 201
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	2 cut(s)	118, 246
Bsp143I	GATC	1 cut(s)	442
BspACI	CCGC	4 cut(s)	17, 101, 156, 219
BspANI	GGCC	1 cut(s)	316
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	96
BsrBI	CCGCTC	1 cut(s)	103
BsrI	ACTGG	6 cut(s)	300, 329, 358, 395, 407, 416
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	1 cut(s)	442
BssNI	GRCGYC	1 cut(s)	26
BssSI	CACGAG	2 cut(s)	111, 171
Bst2BI	CACGAG	2 cut(s)	111, 171
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	193, 208, 215
Bst6I	CTCTTC	1 cut(s)	393
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	118, 246
BstDEI	CTNAG	1 cut(s)	423
BstEII	GGTNACC	1 cut(s)	356
BstH2I	RGCGCY	1 cut(s)	468
BstHHI	GCGC	3 cut(s)	406, 467, 557
BstKTI	GATC	1 cut(s)	445
BstMBI	GATC	1 cut(s)	442
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 419
BstNI	CCWGG	1 cut(s)	42
BstPI	GGTNACC	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	316
BtgZI	GCGATG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	414
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	118, 246
CfoI	GCGC	3 cut(s)	406, 467, 557
Cfr13I	GGNCC	1 cut(s)	204
CseI	GACGC	2 cut(s)	15, 244
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	8 cut(s)	5, 62, 131, 199, 285, 316, 413, 422
CviKI_1	RGCY	8 cut(s)	5, 62, 131, 199, 285, 316, 413, 422
DdeI	CTNAG	1 cut(s)	423
DpnI	GATC	1 cut(s)	444
DpnII	GATC	1 cut(s)	442
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Eco147I	AGGCCT	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	121
Eco91I	GGTNACC	1 cut(s)	356
EcoO65I	GGTNACC	1 cut(s)	356
EcoRII	CCWGG	1 cut(s)	40
FaeI	CATG	1 cut(s)	183
FaiI	YATR	2 cut(s)	32, 181
FaqI	GGGAC	2 cut(s)	197, 201
FatI	CATG	1 cut(s)	179
FauI	CCCGC	1 cut(s)	226
FblI	GTMKAC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	604
GlaI	GCGC	3 cut(s)	405, 466, 556
GsaI	CCCAGC	1 cut(s)	471
GsuI	CTGGAG	2 cut(s)	312, 399
HaeII	RGCGCY	1 cut(s)	468
HaeIII	GGCC	1 cut(s)	316
HgaI	GACGC	2 cut(s)	15, 244
HhaI	GCGC	3 cut(s)	406, 467, 557
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	1 cut(s)	183
Hin6I	GCGC	3 cut(s)	404, 465, 555
HinP1I	GCGC	3 cut(s)	404, 465, 555
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	3 cut(s)	49, 174, 290
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	2 cut(s)	211, 259
Hpy188I	TCNGA	5 cut(s)	48, 138, 289, 426, 433
Hpy188III	TCNNGA	3 cut(s)	171, 202, 548
Hpy8I	GTNNAC	2 cut(s)	211, 259
HpyCH4III	ACNGT	3 cut(s)	193, 208, 215
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	3 cut(s)	91, 437, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 419
HpyF3I	CTNAG	1 cut(s)	423
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	1 cut(s)	183
HspAI	GCGC	3 cut(s)	404, 465, 555
Kzo9I	GATC	1 cut(s)	442
LmnI	GCTCC	4 cut(s)	108, 136, 241, 418
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	1 cut(s)	604
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	1 cut(s)	444
MbiI	CCGCTC	1 cut(s)	103
MboI	GATC	1 cut(s)	442
MboII	GAAGA	3 cut(s)	380, 511, 575
MhlI	GDGCHC	2 cut(s)	118, 246
MluCI	AATT	1 cut(s)	454
MlyI	GAGTC	1 cut(s)	183
MseI	TTAA	3 cut(s)	381, 450, 578
MspR9I	CCNGG	1 cut(s)	42
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	410, 419
NdeII	GATC	1 cut(s)	442
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	4 cut(s)	169, 183, 252, 301
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	49, 290
PflMI	CCANNNNNTGG	1 cut(s)	41
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	356
PspFI	CCCAGC	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	204
SaqAI	TTAA	3 cut(s)	381, 450, 578
Sau3AI	GATC	1 cut(s)	442
Sau96I	GGNCC	1 cut(s)	204
SchI	GAGTC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	2 cut(s)	118, 246
SfaNI	GCATC	1 cut(s)	424
SinI	GGWCC	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	546
SmoI	CTYRAG	1 cut(s)	546
Sse9I	AATT	1 cut(s)	454
SseBI	AGGCCT	1 cut(s)	316
SsiI	CCGC	4 cut(s)	17, 101, 156, 219
SspMI	CTAG	1 cut(s)	604
StuI	AGGCCT	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	3 cut(s)	193, 208, 215
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	1 cut(s)	11
TasI	AATT	1 cut(s)	454
TfiI	GAWTC	2 cut(s)	49, 290
Tru1I	TTAA	3 cut(s)	381, 450, 578
Tru9I	TTAA	3 cut(s)	381, 450, 578
TscAI	CASTG	1 cut(s)	414
TseFI	GTSAC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	356
TspGWI	ACGGA	2 cut(s)	44, 214
TspRI	CASTG	1 cut(s)	414
Van91I	CCANNNNNTGG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.