Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Reverse (-)

20704798 .. 20706140

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG182500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCTTCTTCAACACCGCCGACGGCGTCTATGTCGCCGCCTGGTTCGATTCTTCGTCAAGCTCTACAACCTTGCCCTCCTGCCGACCTGCAACCTCCTCCGCTTCCTCCACGAGCACAACGCGCGAGCACCTTCAAGGAGCACACCTACTGCGTCTACTCCGCCGTCTTTGATGTGAAAGCTCGGAAGCTCGTTCCGGTCGTCAATGGAGGCCTCCAAGACCTCCAGCAGTACAACCTTGAGGAATGCTTTCGGAATTTTAACTTATGTTTTGTAGTTGTGTTGGTTGCTTCAACAAGAACCATAACTGGTGACCTTTCTAATCCATTGCTAGTTAAACCTCTTCAACCGGTTGCTGCACTAGTAGCTCCAGTAGCTCAGAAATCTGATGCACCTGATCGTCTTAATAATTTAGTTGGCGCTAGGTATCAATCATTTGAGAATGCTATTTTGAAGAAACTCACACAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

157

Amino Acids

17.05

Weight (kDa)

9.21

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	2 cut(s)	123, 125
AciI	CCGC	4 cut(s)	17, 38, 101, 162
AcsI	RAATTY	1 cut(s)	256
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	233
AgeI	ACCGGT	1 cut(s)	349
AgsI	TTSAA	5 cut(s)	12, 136, 294, 347, 454
AhlI	ACTAGT	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	5 cut(s)	62, 182, 190, 368, 377
AluI	AGCT	5 cut(s)	62, 182, 190, 368, 377
Alw21I	GWGCWC	3 cut(s)	118, 131, 144
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	356
ApoI	RAATTY	1 cut(s)	256
AsiGI	ACCGGT	1 cut(s)	349
Asp700I	GAANNNNTTC	1 cut(s)	249
AspLEI	GCGC	2 cut(s)	125, 422
AsuHPI	GGTGA	1 cut(s)	323
BauI	CACGAG	1 cut(s)	111
Bbv12I	GWGCWC	3 cut(s)	118, 131, 144
BbvI	GCAGC	1 cut(s)	343
BceAI	ACGGC	2 cut(s)	39, 149
BciT130I	CCWGG	1 cut(s)	42
BcuI	ACTAGT	1 cut(s)	361
BfaI	CTAG	3 cut(s)	332, 362, 423
BfoI	RGCGCY	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	38, 357
BlsI	GCNGC	2 cut(s)	39, 358
Bme1390I	CCNGG	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	1 cut(s)	379
BpmI	CTGGAG	2 cut(s)	209, 354
BpuEI	CTTGAG	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	26
BsaWI	WCCGGW	2 cut(s)	196, 349
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	2 cut(s)	313, 371
Bse3DI	GCAATG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	313, 371
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	342
Bsh1236I	CGCG	2 cut(s)	123, 125
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	349
BsiEI	CGRYCG	1 cut(s)	201
BsiHKAI	GWGCWC	3 cut(s)	118, 131, 144
BsiSI	CCGG	2 cut(s)	197, 350
BsmI	GAATGC	2 cut(s)	251, 448
BsnI	GGCC	1 cut(s)	213
Bsp1286I	GDGCHC	3 cut(s)	118, 131, 144
Bsp143I	GATC	1 cut(s)	397
BspACI	CCGC	4 cut(s)	17, 38, 101, 162
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	391
BspFNI	CGCG	2 cut(s)	123, 125
BspMI	ACCTGC	1 cut(s)	96
BsrDI	GCAATG	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	313, 371
BssAI	RCCGGY	1 cut(s)	349
BssMI	GATC	1 cut(s)	397
BssNI	GRCGYC	1 cut(s)	26
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	42
Bst6I	CTCTTC	1 cut(s)	348
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	378
BstEII	GGTNACC	1 cut(s)	311
BstFNI	CGCG	2 cut(s)	123, 125
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	2 cut(s)	125, 422
BstKTI	GATC	1 cut(s)	400
BstMBI	GATC	1 cut(s)	397
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	3 cut(s)	122, 365, 374
BstNI	CCWGG	1 cut(s)	42
BstPI	GGTNACC	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	40
BstUI	CGCG	2 cut(s)	123, 125
BstV1I	GCAGC	1 cut(s)	343
BsuRI	GGCC	1 cut(s)	213
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	2 cut(s)	125, 422
Cfr10I	RCCGGY	1 cut(s)	349
CseI	GACGC	2 cut(s)	15, 142
Csp6I	GTAC	1 cut(s)	232
CspAI	ACCGGT	1 cut(s)	349
CviJI	RGCY	7 cut(s)	5, 62, 182, 190, 213, 368, 377
CviKI_1	RGCY	7 cut(s)	5, 62, 182, 190, 213, 368, 377
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	378
DpnI	GATC	1 cut(s)	399
DpnII	GATC	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	151
Eco147I	AGGCCT	1 cut(s)	213
Eco91I	GGTNACC	1 cut(s)	311
EcoO65I	GGTNACC	1 cut(s)	311
EcoRII	CCWGG	1 cut(s)	40
FaiI	YATR	3 cut(s)	32, 268, 305
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	2 cut(s)	38, 357
Fsp4HI	GCNGC	2 cut(s)	38, 357
FspBI	CTAG	3 cut(s)	332, 362, 423
GlaI	GCGC	2 cut(s)	124, 421
GluI	GCNGC	2 cut(s)	38, 357
GsuI	CTGGAG	2 cut(s)	209, 354
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	213
HapII	CCGG	2 cut(s)	197, 350
HgaI	GACGC	2 cut(s)	15, 142
HhaI	GCGC	2 cut(s)	125, 422
Hin1I	GRCGYC	1 cut(s)	26
Hin6I	GCGC	2 cut(s)	123, 420
HinP1I	GCGC	2 cut(s)	123, 420
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	2 cut(s)	197, 350
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	4 cut(s)	186, 255, 381, 388
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	142
HpyCH4V	TGCA	3 cut(s)	91, 359, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	122, 365, 374
HpyF3I	CTNAG	1 cut(s)	378
Hsp92I	GRCGYC	1 cut(s)	26
HspAI	GCGC	2 cut(s)	123, 420
Kzo9I	GATC	1 cut(s)	397
LmnI	GCTCC	2 cut(s)	139, 373
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	3 cut(s)	332, 362, 423
MaeIII	GTNAC	1 cut(s)	311
MalI	GATC	1 cut(s)	399
MboI	GATC	1 cut(s)	397
MboII	GAAGA	3 cut(s)	44, 335, 466
MhlI	GDGCHC	3 cut(s)	118, 131, 144
MluCI	AATT	2 cut(s)	256, 409
MnlI	CCTC	9 cut(s)	87, 105, 108, 117, 203, 224, 233, 235, 351
MroXI	GAANNNNTTC	1 cut(s)	249
MseI	TTAA	3 cut(s)	261, 336, 405
MspI	CCGG	2 cut(s)	197, 350
MspR9I	CCNGG	1 cut(s)	42
Mva1269I	GAATGC	2 cut(s)	251, 448
MvaI	CCWGG	1 cut(s)	42
MvnI	CGCG	2 cut(s)	123, 125
MwoI	GCNNNNNNNGC	3 cut(s)	122, 365, 374
NdeII	GATC	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	311
PceI	AGGCCT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	2 cut(s)	251, 448
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	25
PinAI	ACCGGT	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	39, 358
Psp6I	CCWGG	1 cut(s)	40
PspEI	GGTNACC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	40
PsyI	GACNNNGTC	1 cut(s)	25
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SaqAI	TTAA	3 cut(s)	261, 336, 405
SatI	GCNGC	2 cut(s)	38, 357
Sau3AI	GATC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	3 cut(s)	118, 131, 144
SfaNI	GCATC	1 cut(s)	379
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SpeI	ACTAGT	1 cut(s)	361
Sse9I	AATT	2 cut(s)	256, 409
SseBI	AGGCCT	1 cut(s)	213
SsiI	CCGC	4 cut(s)	17, 38, 101, 162
SspMI	CTAG	3 cut(s)	332, 362, 423
StuI	AGGCCT	1 cut(s)	213
StyD4I	CCNGG	1 cut(s)	40
TaqI	TCGA	1 cut(s)	47
TasI	AATT	2 cut(s)	256, 409
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	3 cut(s)	261, 336, 405
Tru9I	TTAA	3 cut(s)	261, 336, 405
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	356
Tsp45I	GTSAC	1 cut(s)	311
Tth111I	GACNNNGTC	1 cut(s)	25
XapI	RAATTY	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	3 cut(s)	332, 362, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.