Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Forward (+)

56725923 .. 56727165

Gene Structure 1243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG378600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAGCACACGCGCGAGGTTAGCTCCGTTGACTATAACCCCACGCACCGCGACTCGTTTCTCACGAGTCGCGTGGGACGACACAGTGAAGCTCTGGACCGTTGACCGTCCCGCCTCCGTCAGCACGTTCAAGGAGCACGCCTACTGCGTCTACTCCGTCGTTTTTGGTGTGAAAAGCTCGGAAGCTCGTTCCAGTCGTCAATGGAGGCCTCCAAGACCTCCAGCGGTTGCTTCAACAAGAACTTTGACTGGTGACCTTTCTAATCCATTGTTGGTTAAACCTCTTCAACCAGTTGTTGCGCCAGTGGCTCCAGTAGCTCAGAAATCTGATGCACCTGATCATCTTAATAATTTAGTTGGCGCTGGGTATCAATCATTTGAGAATGCTATTTTGAAGAAACTTGCACAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

137

Amino Acids

15.0

Weight (kDa)

10.33

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	4 cut(s)	12, 14, 50, 71
AciI	CCGC	3 cut(s)	48, 111, 224
AgsI	TTSAA	4 cut(s)	130, 234, 287, 394
AluBI	AGCT	5 cut(s)	23, 91, 177, 185, 317
AluI	AGCT	5 cut(s)	23, 91, 177, 185, 317
Alw21I	GWGCWC	2 cut(s)	8, 138
AoxI	GGCC	1 cut(s)	206
AspLEI	GCGC	3 cut(s)	14, 301, 362
AspS9I	GGNCC	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	96
BauI	CACGAG	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	8, 138
BclI	TGATCA	1 cut(s)	337
BfoI	RGCGCY	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	309
BmsI	GCATC	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	7, 39
BpmI	CTGGAG	2 cut(s)	204, 294
Bse1I	ACTGG	5 cut(s)	192, 253, 290, 302, 311
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	5 cut(s)	192, 253, 290, 302, 311
BseYI	CCCAGC	1 cut(s)	362
Bsh1236I	CGCG	4 cut(s)	12, 14, 50, 71
BshFI	GGCC	1 cut(s)	208
BsiHKAI	GWGCWC	2 cut(s)	8, 138
BslFI	GGGAC	2 cut(s)	89, 93
BsmFI	GGGAC	2 cut(s)	89, 93
BsmI	GAATGC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	8, 138
Bsp143I	GATC	1 cut(s)	337
BspACI	CCGC	3 cut(s)	48, 111, 224
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	4 cut(s)	12, 14, 50, 71
BspLI	GGNNCC	1 cut(s)	309
BsrI	ACTGG	5 cut(s)	192, 253, 290, 302, 311
BssMI	GATC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	85, 100, 107
Bst6I	CTCTTC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	318
BstEII	GGTNACC	1 cut(s)	251
BstFNI	CGCG	4 cut(s)	12, 14, 50, 71
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	3 cut(s)	14, 301, 362
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 305, 314
BstPI	GGTNACC	1 cut(s)	251
BstUI	CGCG	4 cut(s)	12, 14, 50, 71
BsuRI	GGCC	1 cut(s)	208
BtsIMutI	CAGTG	2 cut(s)	90, 309
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	3 cut(s)	14, 301, 362
Cfr13I	GGNCC	1 cut(s)	96
CseI	GACGC	1 cut(s)	136
CviJI	RGCY	7 cut(s)	23, 91, 177, 185, 208, 308, 317
CviKI_1	RGCY	7 cut(s)	23, 91, 177, 185, 208, 308, 317
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco147I	AGGCCT	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	96
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
FaiI	YATR	1 cut(s)	35
FaqI	GGGAC	2 cut(s)	89, 93
FauI	CCCGC	1 cut(s)	118
FbaI	TGATCA	1 cut(s)	337
FblI	GTMKAC	1 cut(s)	150
GlaI	GCGC	3 cut(s)	13, 300, 361
GsaI	CCCAGC	1 cut(s)	366
GsuI	CTGGAG	2 cut(s)	204, 294
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	208
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	3 cut(s)	14, 301, 362
Hin6I	GCGC	3 cut(s)	12, 299, 360
HinP1I	GCGC	3 cut(s)	12, 299, 360
HincII	GTYRAC	2 cut(s)	30, 103
HindII	GTYRAC	2 cut(s)	30, 103
HinfI	GANTC	2 cut(s)	52, 66
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	3 cut(s)	30, 103, 151
Hpy188I	TCNGA	3 cut(s)	181, 321, 328
Hpy188III	TCNNGA	2 cut(s)	63, 94
Hpy8I	GTNNAC	3 cut(s)	30, 103, 151
Hpy99I	CGWCG	1 cut(s)	161
HpyCH4III	ACNGT	3 cut(s)	85, 100, 107
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	2 cut(s)	332, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 305, 314
HpyF3I	CTNAG	1 cut(s)	318
HpySE526I	ACGT	1 cut(s)	125
HspAI	GCGC	3 cut(s)	12, 299, 360
Ksp22I	TGATCA	1 cut(s)	337
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	3 cut(s)	28, 133, 313
LweI	GCATC	1 cut(s)	319
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	2 cut(s)	275, 406
MhlI	GDGCHC	2 cut(s)	8, 138
MluCI	AATT	1 cut(s)	349
MlyI	GAGTC	2 cut(s)	46, 75
MnlI	CCTC	6 cut(s)	9, 124, 198, 219, 228, 291
MseI	TTAA	2 cut(s)	276, 345
MspA1I	CMGCKG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	388
MvnI	CGCG	4 cut(s)	12, 14, 50, 71
MwoI	GCNNNNNNNGC	3 cut(s)	20, 305, 314
NdeII	GATC	1 cut(s)	337
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	4 cut(s)	61, 75, 144, 193
PctI	GAATGC	1 cut(s)	388
PleI	GAGTC	2 cut(s)	46, 74
PpsI	GAGTC	2 cut(s)	46, 74
PspEI	GGTNACC	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	362
PspN4I	GGNNCC	1 cut(s)	309
PspPI	GGNCC	1 cut(s)	96
SaqAI	TTAA	2 cut(s)	276, 345
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	2 cut(s)	46, 75
SduI	GDGCHC	2 cut(s)	8, 138
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	1 cut(s)	96
Sse9I	AATT	1 cut(s)	349
SseBI	AGGCCT	1 cut(s)	208
SsiI	CCGC	3 cut(s)	48, 111, 224
StuI	AGGCCT	1 cut(s)	208
TaaI	ACNGT	3 cut(s)	85, 100, 107
TaiI	ACGT	1 cut(s)	128
TasI	AATT	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	276, 345
Tru9I	TTAA	2 cut(s)	276, 345
TscAI	CASTG	2 cut(s)	90, 309
TseFI	GTSAC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	251
TspGWI	ACGGA	3 cut(s)	15, 106, 145
TspRI	CASTG	2 cut(s)	90, 309
VpaK11BI	GGWCC	1 cut(s)	96
XmiI	GTMKAC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.