Rh5AG464400

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003071
Physical Location & Seq
Reverse (-)
79452657 .. 79456717
4061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG464400.1

Sequence Viewer

Length: 318 bp
ATGGAGGCCTCCAAGACCTCCAGCGGTACAACCTTGAGGAATGCTTTCGGTAATGTTCTCCCCTTCATCCTCATCCTGATCGGCGTTCACGCTTTTTCGATCAGTCTCTCCTCTGTTGCTTCAACAAGAACTATGACTAGTGACCTTTCTAATCCATTGCTGGTTAAACCTCTTCAACCAGTTGCTGCGCCAGTGGCTCCAGTAGCTCAGAAATCTGATGCACCTGATCGTCTTAATAATTTAGTTGGCGTTGAGTATCAATCATTTGAGAATGCTGTTTTGAAGAAACTTGAACAGGCTGCCCAGAAGCAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

105

Amino Acids

11.18

Weight (kDa)

9.52

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 24
AfaI GTAC 1 cut(s) 28
AgsI TTSAA 4 cut(s) 123, 176, 283, 293
AhlI ACTAGT 1 cut(s) 137
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 110
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 185, 299
Asp700I GAANNNNTTC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 172, 286
BcoDI GTCTC 1 cut(s) 110
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 1 cut(s) 138
BisI GCNGC 2 cut(s) 186, 300
BlsI GCNGC 2 cut(s) 187, 301
BmiI GGNNCC 1 cut(s) 198
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 2 cut(s) 4, 183
BpuEI CTTGAG 1 cut(s) 55
Bse1I ACTGG 3 cut(s) 179, 191, 200
Bse3DI GCAATG 1 cut(s) 155
BseGI GGATG 2 cut(s) 66, 72
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 1 cut(s) 221
BseNI ACTGG 3 cut(s) 179, 191, 200
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 2 cut(s) 172, 286
BshFI GGCC 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 110
BsmI GAATGC 2 cut(s) 46, 277
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 78, 99, 226
BspACI CCGC 1 cut(s) 24
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 155
BsrI ACTGG 3 cut(s) 179, 191, 200
BssMI GATC 3 cut(s) 78, 99, 226
Bst6I CTCTTC 1 cut(s) 177
BstDEI CTNAG 1 cut(s) 207
BstF5I GGATG 2 cut(s) 66, 72
BstHHI GCGC 1 cut(s) 190
BstKTI GATC 3 cut(s) 81, 102, 229
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 3 cut(s) 78, 99, 226
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstV1I GCAGC 2 cut(s) 172, 286
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 2 cut(s) 66, 72
BtsIMutI CAGTG 1 cut(s) 198
CaiI CAGNNNCTG 1 cut(s) 185
CfoI GCGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 27
CviJI RGCY 4 cut(s) 8, 197, 206, 299
CviKI_1 RGCY 4 cut(s) 8, 197, 206, 299
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 207
DpnI GATC 3 cut(s) 80, 101, 228
DpnII GATC 3 cut(s) 78, 99, 226
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
Eco147I AGGCCT 1 cut(s) 8
FaiI YATR 1 cut(s) 134
Fnu4HI GCNGC 2 cut(s) 186, 300
FokI GGATG 2 cut(s) 53, 59
Fsp4HI GCNGC 2 cut(s) 186, 300
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 189
GluI GCNGC 2 cut(s) 186, 300
GsuI CTGGAG 2 cut(s) 4, 183
HaeIII GGCC 1 cut(s) 8
HhaI GCGC 1 cut(s) 190
Hin6I GCGC 1 cut(s) 188
HinP1I GCGC 1 cut(s) 188
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 210, 217
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 1 cut(s) 73
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
HpyF3I CTNAG 1 cut(s) 207
HspAI GCGC 1 cut(s) 188
Kzo9I GATC 3 cut(s) 78, 99, 226
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 8 cut(s) 34, 89, 146, 192, 204, 213, 237, 281
Lsp1109I GCAGC 2 cut(s) 172, 286
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 140
MalI GATC 3 cut(s) 80, 101, 228
MboI GATC 3 cut(s) 78, 99, 226
MboII GAAGA 2 cut(s) 164, 295
MluCI AATT 1 cut(s) 238
MnlI CCTC 6 cut(s) 19, 28, 30, 80, 121, 180
MroXI GAANNNNTTC 1 cut(s) 44
MseI TTAA 2 cut(s) 165, 234
MspA1I CMGCKG 1 cut(s) 24
Mva1269I GAATGC 2 cut(s) 46, 277
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NdeII GATC 3 cut(s) 78, 99, 226
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 140
PceI AGGCCT 1 cut(s) 8
PctI GAATGC 2 cut(s) 46, 277
PdmI GAANNNNTTC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 187, 301
PspN4I GGNNCC 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 185
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 165, 234
SatI GCNGC 2 cut(s) 186, 300
Sau3AI GATC 3 cut(s) 78, 99, 226
SetI ASST 6 cut(s) 20, 35, 147, 172, 208, 226
SfaNI GCATC 1 cut(s) 208
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SpeI ACTAGT 1 cut(s) 137
Sse9I AATT 1 cut(s) 238
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 1 cut(s) 24
SspMI CTAG 1 cut(s) 138
StuI AGGCCT 1 cut(s) 8
TaqI TCGA 1 cut(s) 98
TasI AATT 1 cut(s) 238
Tru1I TTAA 2 cut(s) 165, 234
Tru9I TTAA 2 cut(s) 165, 234
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 2 cut(s) 185, 299
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 198
XmnI GAANNNNTTC 1 cut(s) 44
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.