Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Reverse (-)

53185381 .. 53186808

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG330100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGGCCTCCAAGACCTCCAGCAGTACAACCTTGAGGAATGCTTTCGGTAATGTTCTCTCCTTCTTCATCCTCATCCTGATCGGCGTTCTTGCTTTTTCGATCCGTCTCTTCTCTGTTGCTTCAACAAGAACCATAACTGGTGACCTTTCTAATCCATTGCTGGTTAAACCTCTTCAACCGGTTGCTGCGCTAGTGGCTCCAGTAGCTCAGAAATCTGATGCACCTGATCGTCTTAATAATTTAGTTGGCGCTGGGTATCAATCATTTGAGAATGCTATTTTGAAGAAACTCGCACAGGCTGCCCAAAAGCAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

106

Amino Acids

11.27

Weight (kDa)

10.21

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	97
AfaI	GTAC	1 cut(s)	28
AgeI	ACCGGT	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	126, 179, 286
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	1 cut(s)	97
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	2 cut(s)	188, 302
AsiGI	ACCGGT	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	44
AspLEI	GCGC	2 cut(s)	193, 254
AsuHPI	GGTGA	1 cut(s)	155
BbvI	GCAGC	2 cut(s)	175, 289
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	194
BfoI	RGCGCY	1 cut(s)	255
BisI	GCNGC	2 cut(s)	189, 303
BlsI	GCNGC	2 cut(s)	190, 304
BmiI	GGNNCC	1 cut(s)	201
BmsI	GCATC	1 cut(s)	211
BpmI	CTGGAG	2 cut(s)	4, 186
BpuEI	CTTGAG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	145, 203
Bse3DI	GCAATG	1 cut(s)	158
BseGI	GGATG	2 cut(s)	69, 75
BseMI	GCAATG	1 cut(s)	158
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	145, 203
BseXI	GCAGC	2 cut(s)	175, 289
BseYI	CCCAGC	1 cut(s)	254
BshFI	GGCC	1 cut(s)	8
BshTI	ACCGGT	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
BsmI	GAATGC	2 cut(s)	46, 280
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	3 cut(s)	81, 102, 229
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	145, 203
BssAI	RCCGGY	1 cut(s)	181
BssMI	GATC	3 cut(s)	81, 102, 229
Bst6I	CTCTTC	2 cut(s)	116, 180
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	210
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	69, 75
BstH2I	RGCGCY	1 cut(s)	255
BstHHI	GCGC	2 cut(s)	193, 254
BstKTI	GATC	3 cut(s)	84, 105, 232
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	3 cut(s)	81, 102, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 206, 302
BstPI	GGTNACC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	175, 289
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	69, 75
CfoI	GCGC	2 cut(s)	193, 254
Cfr10I	RCCGGY	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	27
CspAI	ACCGGT	1 cut(s)	181
CviJI	RGCY	4 cut(s)	8, 200, 209, 302
CviKI_1	RGCY	4 cut(s)	8, 200, 209, 302
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	210
DpnI	GATC	3 cut(s)	83, 104, 231
DpnII	GATC	3 cut(s)	81, 102, 229
Eam1104I	CTCTTC	2 cut(s)	116, 180
EarI	CTCTTC	2 cut(s)	116, 180
Eco147I	AGGCCT	1 cut(s)	8
Eco91I	GGTNACC	1 cut(s)	143
EcoO65I	GGTNACC	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	113
FaiI	YATR	1 cut(s)	137
Fnu4HI	GCNGC	2 cut(s)	189, 303
FokI	GGATG	2 cut(s)	56, 62
Fsp4HI	GCNGC	2 cut(s)	189, 303
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	2 cut(s)	192, 253
GluI	GCNGC	2 cut(s)	189, 303
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	2 cut(s)	4, 186
HaeII	RGCGCY	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	182
HhaI	GCGC	2 cut(s)	193, 254
Hin6I	GCGC	2 cut(s)	191, 252
HinP1I	GCGC	2 cut(s)	191, 252
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	2 cut(s)	213, 220
Hpy188III	TCNNGA	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	73
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 206, 302
HpyF3I	CTNAG	1 cut(s)	210
HspAI	GCGC	2 cut(s)	191, 252
Kzo9I	GATC	3 cut(s)	81, 102, 229
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	9 cut(s)	34, 92, 126, 149, 195, 216, 240, 240, 284
Lsp1109I	GCAGC	2 cut(s)	175, 289
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	3 cut(s)	83, 104, 231
MboI	GATC	3 cut(s)	81, 102, 229
MboII	GAAGA	4 cut(s)	58, 103, 167, 298
MluCI	AATT	1 cut(s)	241
MnlI	CCTC	5 cut(s)	19, 28, 30, 83, 183
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	2 cut(s)	168, 237
MspI	CCGG	1 cut(s)	182
Mva1269I	GAATGC	2 cut(s)	46, 280
MwoI	GCNNNNNNNGC	3 cut(s)	197, 206, 302
NdeII	GATC	3 cut(s)	81, 102, 229
NlaIV	GGNNCC	1 cut(s)	201
NmuCI	GTSAC	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	8
PctI	GAATGC	2 cut(s)	46, 280
PdmI	GAANNNNTTC	1 cut(s)	44
PinAI	ACCGGT	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	190, 304
PspEI	GGTNACC	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	254
PspN4I	GGNNCC	1 cut(s)	201
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	168, 237
SatI	GCNGC	2 cut(s)	189, 303
Sau3AI	GATC	3 cut(s)	81, 102, 229
SetI	ASST	6 cut(s)	20, 35, 150, 175, 211, 229
SfaNI	GCATC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	1 cut(s)	241
SseBI	AGGCCT	1 cut(s)	8
SspMI	CTAG	1 cut(s)	194
StuI	AGGCCT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	101
TasI	AATT	1 cut(s)	241
TatI	WGTACW	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	168, 237
Tru9I	TTAA	2 cut(s)	168, 237
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	188, 302
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	58
TspGWI	ACGGA	1 cut(s)	95
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.