Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Reverse (-)

33506326 .. 33506742

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0291900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGGGAAAAGAGATTGGGATGGCCGGAAGAGTGCTCGGGTTCGATGGTGGCTGTCGGGGTTGAGAGGGAGGTGCAGGCGGCATTCACTGCTATGGAATGCTAAGGCTCGACGGAGTTGGGGGCCACGCTGTGGAGGGAAGATGGGATCGGTGCTCTTTCTGCCATGGGGAGATCGATCCTATCTGTTTCGATCGGTGGTGCCTTACCCCTTCCAGATTTGGTATCTGGCCAACGGGAGTAGTCATCTCCGGTCCGGCGAGTGGCCGTATATGAACGATGGTGTTGCAGCGGCGGTGAAAGCTCGATCGGCGGATGGTGGTGGACGTGCGACCGTGGGAATACGACTGGTACTCTTCTGGGCCTGGTGGGGCTTTCCCACATTCTTGGTCGGGTCTTGGTCCTGGTGTTGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ RRM_1

Protein Analysis

138

Amino Acids

15.88

Weight (kDa)

11.39

Isoelectric Point (pI)

54.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	199
AccB7I	CCANNNNNTGG	1 cut(s)	131
AciI	CCGC	4 cut(s)	79, 290, 293, 311
AclWI	GGATC	2 cut(s)	154, 171
AcoI	YGGCCR	3 cut(s)	22, 228, 263
AdeI	CACNNNGTG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	3 cut(s)	131, 261, 408
AjiI	CACGTC	1 cut(s)	326
AjnI	CCWGG	2 cut(s)	362, 401
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw21I	GWGCWC	2 cut(s)	37, 156
AlwI	GGATC	2 cut(s)	154, 171
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	6 cut(s)	22, 122, 228, 263, 360, 411
ApeKI	GCWGC	1 cut(s)	287
AspS9I	GGNCC	5 cut(s)	122, 252, 360, 399, 411
AsuHPI	GGTGA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	2 cut(s)	252, 399
BalI	TGGCCA	1 cut(s)	230
BanI	GGYRCC	1 cut(s)	199
Bbv12I	GWGCWC	2 cut(s)	37, 156
BbvI	GCAGC	1 cut(s)	299
BccI	CCATC	5 cut(s)	14, 39, 136, 272, 308
BceAI	ACGGC	1 cut(s)	250
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	2 cut(s)	364, 403
BisI	GCNGC	3 cut(s)	80, 288, 291
BlsI	GCNGC	3 cut(s)	81, 289, 292
Bme1390I	CCNGG	2 cut(s)	364, 403
Bme18I	GGWCC	2 cut(s)	252, 399
BmeT110I	CYCGRG	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	326
BmgT120I	GGNCC	5 cut(s)	122, 252, 360, 399, 411
BmiI	GGNNCC	2 cut(s)	123, 201
BmrFI	CCNGG	2 cut(s)	364, 403
Bpu10I	CCTNAGC	1 cut(s)	102
Bsa29I	ATCGAT	1 cut(s)	175
BsaJI	CCNNGG	2 cut(s)	164, 333
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 261, 408
Bse1I	ACTGG	1 cut(s)	351
BseBI	CCWGG	2 cut(s)	364, 403
BseCI	ATCGAT	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	164, 333
BseGI	GGATG	2 cut(s)	25, 319
BseLI	CCNNNNNNNGG	3 cut(s)	131, 261, 408
BseNI	ACTGG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	299
BsgI	GTGCAG	1 cut(s)	94
Bsh1285I	CGRYCG	3 cut(s)	194, 308, 333
BshFI	GGCC	6 cut(s)	24, 124, 230, 265, 362, 413
BshNI	GGYRCC	1 cut(s)	199
BshVI	ATCGAT	1 cut(s)	175
BsiEI	CGRYCG	3 cut(s)	194, 308, 333
BsiHKAI	GWGCWC	2 cut(s)	37, 156
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	25, 250, 255
BslI	CCNNNNNNNGG	3 cut(s)	131, 261, 408
BsmI	GAATGC	2 cut(s)	82, 103
BsnI	GGCC	6 cut(s)	24, 124, 230, 265, 362, 413
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	37, 156
Bsp143I	GATC	5 cut(s)	146, 172, 176, 191, 305
Bsp19I	CCATGG	1 cut(s)	164
BspACI	CCGC	4 cut(s)	79, 290, 293, 311
BspANI	GGCC	6 cut(s)	24, 124, 230, 265, 362, 413
BspDI	ATCGAT	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	123, 201
BspPI	GGATC	2 cut(s)	154, 171
BspT107I	GGYRCC	1 cut(s)	199
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	2 cut(s)	164, 333
BssMI	GATC	5 cut(s)	146, 172, 176, 191, 305
BssT1I	CCWWGG	1 cut(s)	164
Bst2UI	CCWGG	2 cut(s)	364, 403
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	2 cut(s)	23, 359
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	2 cut(s)	164, 333
BstF5I	GGATG	2 cut(s)	25, 319
BstKTI	GATC	5 cut(s)	149, 175, 179, 194, 308
BstMBI	GATC	5 cut(s)	146, 172, 176, 191, 305
BstMCI	CGRYCG	3 cut(s)	194, 308, 333
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 160, 299, 308
BstNI	CCWGG	2 cut(s)	364, 403
BstSCI	CCNGG	2 cut(s)	362, 401
BstV1I	GCAGC	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	385
Bsu15I	ATCGAT	1 cut(s)	175
BsuRI	GGCC	6 cut(s)	24, 124, 230, 265, 362, 413
BsuTUI	ATCGAT	1 cut(s)	175
BtgI	CCRYGG	2 cut(s)	164, 333
BtrI	CACGTC	1 cut(s)	326
BtsCI	GGATG	2 cut(s)	25, 319
BtsI	GCAGTG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	77
Cfr13I	GGNCC	5 cut(s)	122, 252, 360, 399, 411
ClaI	ATCGAT	1 cut(s)	175
CpoI	CGGWCCG	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	350
CspI	CGGWCCG	1 cut(s)	252
CviAII	CATG	1 cut(s)	165
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	5 cut(s)	148, 174, 178, 193, 307
DpnII	GATC	5 cut(s)	146, 172, 176, 191, 305
DraIII	CACNNNGTG	1 cut(s)	131
EaeI	YGGCCR	3 cut(s)	22, 228, 263
Eam1104I	CTCTTC	2 cut(s)	23, 359
EarI	CTCTTC	2 cut(s)	23, 359
EciI	GGCGGA	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	164
Eco47I	GGWCC	2 cut(s)	252, 399
Eco88I	CYCGRG	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	362, 401
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	1 cut(s)	168
FaiI	YATR	4 cut(s)	94, 166, 270, 272
FatI	CATG	1 cut(s)	164
Fnu4HI	GCNGC	3 cut(s)	80, 288, 291
FokI	GGATG	2 cut(s)	32, 326
Fsp4HI	GCNGC	3 cut(s)	80, 288, 291
GluI	GCNGC	3 cut(s)	80, 288, 291
HaeIII	GGCC	6 cut(s)	24, 124, 230, 265, 362, 413
HapII	CCGG	3 cut(s)	25, 250, 255
Hin1II	CATG	1 cut(s)	168
HpaII	CCGG	3 cut(s)	25, 250, 255
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188III	TCNNGA	1 cut(s)	214
Hpy8I	GTNNAC	1 cut(s)	323
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	75, 287
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 160, 299, 308
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	168
Kzo9I	GATC	5 cut(s)	146, 172, 176, 191, 305
Lsp1109I	GCAGC	1 cut(s)	299
MaeII	ACGT	1 cut(s)	325
MalI	GATC	5 cut(s)	148, 174, 178, 193, 307
MboI	GATC	5 cut(s)	146, 172, 176, 191, 305
MboII	GAAGA	3 cut(s)	40, 151, 346
MhlI	GDGCHC	2 cut(s)	37, 156
MlsI	TGGCCA	1 cut(s)	230
MluNI	TGGCCA	1 cut(s)	230
MnlI	CCTC	3 cut(s)	59, 63, 128
Mox20I	TGGCCA	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	91
Msp20I	TGGCCA	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	290
MspI	CCGG	3 cut(s)	25, 250, 255
MspR9I	CCNGG	2 cut(s)	364, 403
Mva1269I	GAATGC	2 cut(s)	82, 103
MvaI	CCWGG	2 cut(s)	364, 403
MwoI	GCNNNNNNNGC	4 cut(s)	88, 160, 299, 308
NcoI	CCATGG	1 cut(s)	164
NdeII	GATC	5 cut(s)	146, 172, 176, 191, 305
NlaIII	CATG	1 cut(s)	168
NlaIV	GGNNCC	2 cut(s)	123, 201
PctI	GAATGC	2 cut(s)	82, 103
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	3 cut(s)	81, 289, 292
Ple19I	CGATCG	2 cut(s)	194, 308
Psp6I	CCWGG	2 cut(s)	362, 401
PspGI	CCWGG	2 cut(s)	362, 401
PspN4I	GGNNCC	2 cut(s)	123, 201
PspPI	GGNCC	5 cut(s)	122, 252, 360, 399, 411
PvuI	CGATCG	2 cut(s)	194, 308
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	91
Rsr2I	CGGWCCG	1 cut(s)	252
RsrII	CGGWCCG	1 cut(s)	252
SatI	GCNGC	3 cut(s)	80, 288, 291
Sau3AI	GATC	5 cut(s)	146, 172, 176, 191, 305
Sau96I	GGNCC	5 cut(s)	122, 252, 360, 399, 411
ScrFI	CCNGG	2 cut(s)	364, 403
SduI	GDGCHC	2 cut(s)	37, 156
SetI	ASST	3 cut(s)	74, 304, 328
SinI	GGWCC	2 cut(s)	252, 399
SmiMI	CAYNNNNRTG	1 cut(s)	91
SsiI	CCGC	4 cut(s)	79, 290, 293, 311
StyD4I	CCNGG	2 cut(s)	362, 401
StyI	CCWWGG	1 cut(s)	164
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	5 cut(s)	43, 109, 175, 190, 304
TauI	GCSGC	2 cut(s)	82, 293
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	93
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	252, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.