Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Reverse (-)

6445607 .. 6446771

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG080500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGTGATGATGAGCTATTGGTGGAAGTGGTGGCATCAGATGCCGCCGTTCAAATCATTGAGACTAGACTTAGGTGTCCCGAGCCTGAATGCCCCGAGTCTGGACAACCCCACGCACCACGGCTCGTTCCTCACCGCCACGTGGGACGACACCGTGAAGCTCTGGACCGCCGACAGCCCAGCCTCCGTCTGCACCTTCAAGGAGCAAGCCTACTGCGTCTACTTCGCCGTCTTTGGTGTGAAGAGCTCAGAAGCTCGTTCCGGTCGTCAATGGAGGCCTCCGAGACCTCCAGCGGTACAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0031461 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043574 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

WD40

Protein Analysis

101

Amino Acids

11.61

Weight (kDa)

9.1

Isoelectric Point (pI)

58.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	4 cut(s)	44, 135, 168, 293
AcvI	CACGTG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	100, 141
AgsI	TTSAA	2 cut(s)	52, 199
AluBI	AGCT	4 cut(s)	15, 160, 246, 254
AluI	AGCT	4 cut(s)	15, 160, 246, 254
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	55, 277
Ama87I	CYCGRG	2 cut(s)	79, 94
AoxI	GGCC	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	165
AsuHPI	GGTGA	2 cut(s)	16, 124
AvaI	CYCGRG	2 cut(s)	79, 94
AvaII	GGWCC	1 cut(s)	165
BanII	GRGCYC	1 cut(s)	248
BbrPI	CACGTG	1 cut(s)	141
Bbv12I	GWGCWC	1 cut(s)	248
BceAI	ACGGC	3 cut(s)	31, 136, 212
BcoDI	GTCTC	2 cut(s)	55, 277
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
Bme18I	GGWCC	1 cut(s)	165
BmeT110I	CYCGRG	2 cut(s)	79, 94
BmgT120I	GGNCC	1 cut(s)	165
BmsI	GCATC	2 cut(s)	30, 43
BpmI	CTGGAG	1 cut(s)	273
BsaAI	YACGTR	1 cut(s)	141
BsaI	GGTCTC	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	260
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 141
BseDI	CCNNGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	100, 141
BseMII	CTCAG	1 cut(s)	261
BseYI	CCCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	277
BsiEI	CGRYCG	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	248
BsiHKCI	CYCGRG	2 cut(s)	79, 94
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	2 cut(s)	62, 158
BslI	CCNNNNNNNGG	2 cut(s)	100, 141
BsmAI	GTCTC	2 cut(s)	55, 277
BsmFI	GGGAC	2 cut(s)	62, 158
BsmI	GAATGC	1 cut(s)	94
BsnI	GGCC	1 cut(s)	277
Bso31I	GGTCTC	1 cut(s)	277
BsoBI	CYCGRG	2 cut(s)	79, 94
Bsp1286I	GDGCHC	1 cut(s)	248
BspACI	CCGC	4 cut(s)	44, 135, 168, 293
BspANI	GGCC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	260
BspQI	GCTCTTC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	2 cut(s)	70, 247
BstDSI	CCRYGG	1 cut(s)	118
BstMAI	GTCTC	2 cut(s)	55, 277
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	277
BtgI	CCRYGG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	165
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	296
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	2 cut(s)	70, 247
DrdI	GACNNNNNNGTC	1 cut(s)	74
DseDI	GACNNNNNNGTC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Ecl136II	GAGCTC	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	248
Eco31I	GGTCTC	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	165
Eco53kI	GAGCTC	1 cut(s)	246
Eco72I	CACGTG	1 cut(s)	141
Eco88I	CYCGRG	2 cut(s)	79, 94
EcoICRI	GAGCTC	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	248
FaqI	GGGAC	2 cut(s)	62, 158
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	44
GsaI	CCCAGC	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	277
HapII	CCGG	1 cut(s)	261
HgaI	GACGC	1 cut(s)	205
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	2 cut(s)	16, 124
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	39, 250, 282
Hpy188III	TCNNGA	3 cut(s)	79, 101, 163
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	2 cut(s)	70, 247
HpySE526I	ACGT	1 cut(s)	140
LguI	GCTCTTC	1 cut(s)	236
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	5 cut(s)	86, 98, 148, 192, 274
LweI	GCATC	2 cut(s)	30, 43
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	140
MboII	GAAGA	1 cut(s)	253
MhlI	GDGCHC	1 cut(s)	248
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	140, 193, 267, 288, 297
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	261
Mva1269I	GAATGC	1 cut(s)	94
MwoI	GCNNNNNNNGC	1 cut(s)	40
PceI	AGGCCT	1 cut(s)	277
PciSI	GCTCTTC	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PctI	GAATGC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	45
PleI	GAGTC	1 cut(s)	105
PmaCI	CACGTG	1 cut(s)	141
PmlI	CACGTG	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	105
Ppu21I	YACGTR	1 cut(s)	141
Psp124BI	GAGCTC	1 cut(s)	248
PspCI	CACGTG	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	165
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SacI	GAGCTC	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	236
SatI	GCNGC	1 cut(s)	44
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	9 cut(s)	17, 76, 143, 162, 197, 248, 256, 289, 304
SfaNI	GCATC	2 cut(s)	30, 43
SinI	GGWCC	1 cut(s)	165
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	4 cut(s)	44, 135, 168, 293
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	248
StuI	AGGCCT	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	143
TauI	GCSGC	1 cut(s)	46
TspGWI	ACGGA	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.