Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Forward (+)

30976763 .. 30981618

Gene Structure 4856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG279300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCACTCAATGCTTCAGTTGACTCCTCAAGGTACTTCACAGATTCAGTATATACCGCAGCATTTGGTGAGACTGTTGCAAATTATTGTGGACGGTAACTGCGACATTGGTGTACGTCAGGTTGCCAGCATCCATTTCAAGAACTTCATTAGAAAGAACTGGTTACCTCATGAGCCAGATGAGCATAATAAGATATCACAAGCTGACAAAGACGTGGTTAGAGAGCACGTTCTTGTCTTTGTTACACAGGTTCCCCCATTGTTAAGGGTACAACTGGGTGAGTGCCTAAAGACAATTATTTTTGTCAATTACCCTGAGCGGTGGCCACGACTTTTAGACTATGTGAAGCACAACTTGCAAGACCAACAAGTTCATGGAGCTTTGTTAGTTTTGCAGATTCTTTCTAGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031047 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko04013 map04013

Pfam Domains

Protein Families

Cse1 IBN_N

Protein Analysis

137

Amino Acids

15.99

Weight (kDa)

9.03

Isoelectric Point (pI)

45.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	14 - 80	1.1e-12	Importin-beta N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	319
AciI	CCGC	2 cut(s)	56, 319
AcoI	YGGCCR	1 cut(s)	323
AfaI	GTAC	3 cut(s)	34, 114, 270
AgsI	TTSAA	1 cut(s)	139
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	2 cut(s)	203, 380
AluI	AGCT	2 cut(s)	203, 380
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	79, 290
BalI	TGGCCA	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	64
BfaI	CTAG	1 cut(s)	405
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	252
BmrI	ACTGGG	1 cut(s)	284
BmsI	GCATC	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	164, 279
BseGI	GGATG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	306
BseNI	ACTGG	2 cut(s)	164, 279
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	1 cut(s)	70
BshFI	GGCC	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	325
Bsp1286I	GDGCHC	1 cut(s)	228
BspACI	CCGC	2 cut(s)	56, 319
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	252
BsrBI	CCGCTC	1 cut(s)	319
BsrI	ACTGG	2 cut(s)	164, 279
Bst4CI	ACNGT	2 cut(s)	75, 95
BstAPI	GCANNNNNTGC	2 cut(s)	10, 355
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	315
BstEII	GGTNACC	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	129
BstMAI	GTCTC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 181, 355
BstPI	GGTNACC	1 cut(s)	162
BstV1I	GCAGC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	325
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	127
CciI	TCATGA	1 cut(s)	169
Csp6I	GTAC	3 cut(s)	33, 113, 269
CviAII	CATG	2 cut(s)	170, 374
CviJI	RGCY	4 cut(s)	175, 203, 325, 380
CviKI_1	RGCY	4 cut(s)	175, 203, 325, 380
CviQI	GTAC	3 cut(s)	33, 113, 269
DdeI	CTNAG	1 cut(s)	315
EaeI	YGGCCR	1 cut(s)	323
Eco32I	GATATC	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	162
EcoO65I	GGTNACC	1 cut(s)	162
EcoRV	GATATC	1 cut(s)	195
FaeI	CATG	2 cut(s)	173, 377
FaiI	YATR	6 cut(s)	51, 53, 171, 186, 342, 375
FalI	AAGNNNNNCTT	2 cut(s)	338, 370
FatI	CATG	2 cut(s)	169, 373
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	59
FspBI	CTAG	1 cut(s)	405
GluI	GCNGC	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	325
Hin1II	CATG	2 cut(s)	173, 377
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HinfI	GANTC	3 cut(s)	22, 43, 397
HphI	GGTGA	2 cut(s)	79, 290
Hpy166II	GTNNAC	3 cut(s)	21, 91, 113
Hpy188III	TCNNGA	3 cut(s)	139, 170, 405
Hpy8I	GTNNAC	3 cut(s)	21, 91, 113
HpyCH4III	ACNGT	2 cut(s)	75, 95
HpyCH4IV	ACGT	3 cut(s)	115, 213, 228
HpyCH4V	TGCA	4 cut(s)	4, 79, 358, 394
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 181, 355
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	3 cut(s)	115, 213, 228
Hsp92II	CATG	2 cut(s)	173, 377
LmnI	GCTCC	1 cut(s)	377
LpnPI	CCDG	7 cut(s)	104, 139, 145, 189, 233, 260, 327
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	3 cut(s)	115, 213, 228
MaeIII	GTNAC	3 cut(s)	95, 162, 241
MbiI	CCGCTC	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	228
MlsI	TGGCCA	1 cut(s)	325
MluCI	AATT	3 cut(s)	81, 294, 307
MluNI	TGGCCA	1 cut(s)	325
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	2 cut(s)	36, 177
Mox20I	TGGCCA	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	325
MseI	TTAA	1 cut(s)	263
Msp20I	TGGCCA	1 cut(s)	325
MwoI	GCNNNNNNNGC	3 cut(s)	10, 181, 355
NlaIII	CATG	2 cut(s)	173, 377
NlaIV	GGNNCC	1 cut(s)	252
PagI	TCATGA	1 cut(s)	169
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	2 cut(s)	43, 397
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	16
PspEI	GGTNACC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	252
RsaI	GTAC	3 cut(s)	34, 114, 270
RsaNI	GTAC	3 cut(s)	33, 113, 269
SaqAI	TTAA	1 cut(s)	263
SatI	GCNGC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	9 cut(s)	34, 118, 123, 169, 205, 216, 231, 252, 382
SfaNI	GCATC	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	3 cut(s)	81, 294, 307
SsiI	CCGC	2 cut(s)	56, 319
SspMI	CTAG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	75, 95
TaiI	ACGT	3 cut(s)	118, 216, 231
TasI	AATT	3 cut(s)	81, 294, 307
TfiI	GAWTC	2 cut(s)	43, 397
Tru1I	TTAA	1 cut(s)	263
Tru9I	TTAA	1 cut(s)	263
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	136, 362
XbaI	TCTAGA	1 cut(s)	404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	371
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.