Rh7CG489500

toxin transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003071
Physical Location & Seq
Reverse (-)
65822573 .. 65823341
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG489500.1

Sequence Viewer

Length: 408 bp
ATGGAGACTAGAGATGCAGCTGTTGCTGCTACAGGAGCGGTAATTGGTGATCTTTCTAATCCGTTGACGGTTTCACTTTTTCAACCAGTTGCACAGAAGATGACGGTGTCTCCGACAGCTGAGAAGTCTGCGGAACCTGATCGGGTTAATAATTTGGTTGGGGTTGGCTTTCGAACATTTGAAGATGATGTTTTAAAGAAGGTTGCACAGGCTGGGCAGAAGCAAAAACTTGATAGACAAGCTCTGTACTTCTGCCTCATTCATGGACTTTGTCAAAATCTTCAAAATATGAAAATTTGGAGAGGAAGCTTTTTCATCTCTCAAAAATTTGGAGAGCTAAGATTATTCATCTCGTTCATGTCCAATCTGGGTGGTTGCAGATGCAAAGGAATGCTAAATTACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 ko05145 map04626 map05145
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

135

Amino Acids

14.95

Weight (kDa)

9.21

Isoelectric Point (pI)

26.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 38
AciI CCGC 2 cut(s) 38, 131
AcsI RAATTY 2 cut(s) 294, 326
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 3 cut(s) 83, 182, 284
AluBI AGCT 5 cut(s) 20, 119, 242, 309, 337
AluI AGCT 5 cut(s) 20, 119, 242, 309, 337
Alw26I GTCTC 1 cut(s) 114
ApeKI GCWGC 2 cut(s) 17, 26
ApoI RAATTY 2 cut(s) 294, 326
AsuHPI GGTGA 1 cut(s) 59
AsuII TTCGAA 1 cut(s) 172
BbvI GCAGC 2 cut(s) 13, 29
BcoDI GTCTC 1 cut(s) 114
BfaI CTAG 1 cut(s) 9
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 2 cut(s) 18, 27
BlsI GCNGC 2 cut(s) 19, 28
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 2 cut(s) 4, 371
Bpu14I TTCGAA 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 94, 124
Bse1I ACTGG 1 cut(s) 86
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 13, 29
BseYI CCCAGC 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 396
Bsp119I TTCGAA 1 cut(s) 172
Bsp143I GATC 2 cut(s) 49, 139
BspACI CCGC 2 cut(s) 38, 131
BspCNI CTCAG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 135
BspT104I TTCGAA 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 38
BsrI ACTGG 1 cut(s) 86
BssMI GATC 2 cut(s) 49, 139
Bst4CI ACNGT 2 cut(s) 70, 106
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBI TTCGAA 1 cut(s) 172
BstDEI CTNAG 2 cut(s) 120, 338
BstKTI GATC 2 cut(s) 52, 142
BstMAI GTCTC 1 cut(s) 114
BstMBI GATC 2 cut(s) 49, 139
BstMWI GCNNNNNNNGC 3 cut(s) 23, 26, 35
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 2 cut(s) 13, 29
Csp6I GTAC 1 cut(s) 247
CspCI CAANNNNNGTGG 2 cut(s) 352, 387
CviAII CATG 2 cut(s) 263, 358
CviJI RGCY 7 cut(s) 20, 119, 168, 212, 242, 309, 337
CviKI_1 RGCY 7 cut(s) 20, 119, 168, 212, 242, 309, 337
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 2 cut(s) 120, 338
DpnI GATC 2 cut(s) 51, 141
DpnII GATC 2 cut(s) 49, 139
DraI TTTAAA 1 cut(s) 195
FaeI CATG 2 cut(s) 266, 361
FaiI YATR 4 cut(s) 264, 290, 359, 406
FatI CATG 2 cut(s) 262, 357
Fnu4HI GCNGC 2 cut(s) 18, 27
Fsp4HI GCNGC 2 cut(s) 18, 27
FspBI CTAG 1 cut(s) 9
GluI GCNGC 2 cut(s) 18, 27
GsaI CCCAGC 1 cut(s) 216
Hin1II CATG 2 cut(s) 266, 361
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 307
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 114
Hpy8I GTNNAC 1 cut(s) 66
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 70, 106
HpyCH4V TGCA 5 cut(s) 17, 92, 206, 378, 384
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 26, 35
HpyF3I CTNAG 2 cut(s) 120, 338
Hsp92II CATG 2 cut(s) 266, 361
Kzo9I GATC 2 cut(s) 49, 139
LmnI GCTCC 1 cut(s) 35
LpnPI CCDG 6 cut(s) 18, 99, 150, 194, 198, 353
Lsp1109I GCAGC 2 cut(s) 13, 29
LweI GCATC 2 cut(s) 4, 371
MaeI CTAG 1 cut(s) 9
MalI GATC 2 cut(s) 51, 141
MbiI CCGCTC 1 cut(s) 38
MboI GATC 2 cut(s) 49, 139
MboII GAAGA 3 cut(s) 109, 194, 272
MluCI AATT 5 cut(s) 42, 151, 294, 326, 397
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 2 cut(s) 266, 296
MseI TTAA 2 cut(s) 147, 194
MspA1I CMGCKG 2 cut(s) 20, 119
Mva1269I GAATGC 1 cut(s) 396
MwoI GCNNNNNNNGC 3 cut(s) 23, 26, 35
NdeII GATC 2 cut(s) 49, 139
NlaIII CATG 2 cut(s) 266, 361
NlaIV GGNNCC 1 cut(s) 135
NspV TTCGAA 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PctI GAATGC 1 cut(s) 396
PflFI GACNNNGTC 2 cut(s) 106, 270
PkrI GCNGC 2 cut(s) 19, 28
PspFI CCCAGC 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 135
PsyI GACNNNGTC 2 cut(s) 106, 270
PvuII CAGCTG 2 cut(s) 20, 119
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 2 cut(s) 147, 194
SatI GCNGC 2 cut(s) 18, 27
Sau3AI GATC 2 cut(s) 49, 139
SetI ASST 8 cut(s) 22, 121, 139, 204, 244, 311, 339, 405
SfaNI GCATC 2 cut(s) 4, 371
SfcI CTRYAG 1 cut(s) 30
SfuI TTCGAA 1 cut(s) 172
Sse9I AATT 5 cut(s) 42, 151, 294, 326, 397
SsiI CCGC 2 cut(s) 38, 131
SspMI CTAG 1 cut(s) 9
TaaI ACNGT 2 cut(s) 70, 106
TaqI TCGA 1 cut(s) 172
TasI AATT 5 cut(s) 42, 151, 294, 326, 397
TatI WGTACW 1 cut(s) 246
Tru1I TTAA 2 cut(s) 147, 194
Tru9I TTAA 2 cut(s) 147, 194
TseI GCWGC 2 cut(s) 17, 26
TspDTI ATGAA 5 cut(s) 251, 304, 305, 337, 346
TspGWI ACGGA 1 cut(s) 51
Tth111I GACNNNGTC 2 cut(s) 106, 270
XapI RAATTY 2 cut(s) 294, 326
XspI CTAG 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.