Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Forward (+)

4253267 .. 4254558

Gene Structure 1292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG022800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGAGGCCTTCGAGACCTCCAGCGGTACAACCTTGAGGAATGCTTTCGATAATGCCCTTTCCTTGTTCATCCTCATCCTGAACGTAAAGCCACCGAGCACAGCCTCAATCAGGGGTTTTTATCTGATGATGTTGATGTTGGGGGTTTGGTTTGCAAATTCAGCATATACCGCAACATTTGGTGAGACTATTGCAAATTATTTGGACGGTAACTGCGACATGGGTGTACGTCAGGTTGCCAGCATCCATTTCAAGAACTTCATTGGAAAGAACTGGTTACCTCATGAGCCAGATGAGCATAATAAGATATCACAAGCTGACAAAGACGTGGTTAGAGAGCACGTTCTTGTCTTTGTTACACAAGTTCCCCCATTGTACGTTAAGGTACTTCGTTTGCTGTTTCTGCTACTGTGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031047 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko04013 map04013

Pfam Domains

Protein Families

Cse1 IBN_N

Protein Analysis

139

Amino Acids

15.78

Weight (kDa)

6.4

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	69 - 118	1.3e-06	Importin-beta N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	24, 171
AcsI	RAATTY	1 cut(s)	157
AfaI	GTAC	4 cut(s)	28, 228, 377, 387
AfiI	CCNNNNNNNGG	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	253
AjiI	CACGTC	1 cut(s)	328
AluBI	AGCT	1 cut(s)	317
AluI	AGCT	1 cut(s)	317
Alw21I	GWGCWC	2 cut(s)	101, 342
Alw26I	GTCTC	2 cut(s)	8, 179
AoxI	GGCC	1 cut(s)	6
ApoI	RAATTY	1 cut(s)	157
Asp700I	GAANNNNTTC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	194
Bbv12I	GWGCWC	2 cut(s)	101, 342
BcoDI	GTCTC	2 cut(s)	8, 179
BmgBI	CACGTC	1 cut(s)	328
BmsI	GCATC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	4
BpuEI	CTTGAG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	278
BseGI	GGATG	3 cut(s)	69, 75, 243
BseLI	CCNNNNNNNGG	1 cut(s)	111
BseNI	ACTGG	1 cut(s)	278
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	2 cut(s)	101, 342
BslI	CCNNNNNNNGG	1 cut(s)	111
BsmAI	GTCTC	2 cut(s)	8, 179
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	101, 342
BspACI	CCGC	2 cut(s)	24, 171
BspANI	GGCC	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	283
BspTNI	GGTCTC	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	209, 411
BstC8I	GCNNGC	1 cut(s)	241
BstEII	GGTNACC	1 cut(s)	276
BstENI	CCTNNNNNAGG	1 cut(s)	109
BstF5I	GGATG	3 cut(s)	69, 75, 243
BstMAI	GTCTC	2 cut(s)	8, 179
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 170, 295, 403, 412
BstPI	GGTNACC	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	8
BtrI	CACGTC	1 cut(s)	328
BtsCI	GGATG	3 cut(s)	69, 75, 243
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	283
Csp6I	GTAC	4 cut(s)	27, 227, 376, 386
CviAII	CATG	2 cut(s)	220, 284
CviJI	RGCY	5 cut(s)	8, 91, 104, 289, 317
CviKI_1	RGCY	5 cut(s)	8, 91, 104, 289, 317
CviQI	GTAC	4 cut(s)	27, 227, 376, 386
Eco147I	AGGCCT	1 cut(s)	8
Eco31I	GGTCTC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	309
Eco91I	GGTNACC	1 cut(s)	276
EcoNI	CCTNNNNNAGG	1 cut(s)	109
EcoO65I	GGTNACC	1 cut(s)	276
EcoRV	GATATC	1 cut(s)	309
FaeI	CATG	2 cut(s)	223, 287
FaiI	YATR	5 cut(s)	166, 168, 221, 285, 300
FatI	CATG	2 cut(s)	219, 283
FokI	GGATG	3 cut(s)	56, 62, 230
GsuI	CTGGAG	1 cut(s)	4
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	223, 287
HphI	GGTGA	1 cut(s)	194
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	4 cut(s)	13, 79, 253, 284
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	2 cut(s)	209, 411
HpyCH4IV	ACGT	5 cut(s)	84, 229, 327, 342, 378
HpyCH4V	TGCA	2 cut(s)	155, 194
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 170, 295, 403, 412
HpySE526I	ACGT	5 cut(s)	84, 229, 327, 342, 378
Hsp92II	CATG	2 cut(s)	223, 287
LpnPI	CCDG	7 cut(s)	34, 92, 97, 218, 253, 259, 303
LweI	GCATC	1 cut(s)	252
MaeII	ACGT	5 cut(s)	84, 229, 327, 342, 378
MaeIII	GTNAC	3 cut(s)	209, 276, 355
MhlI	GDGCHC	2 cut(s)	101, 342
MluCI	AATT	2 cut(s)	157, 196
MnlI	CCTC	5 cut(s)	28, 30, 83, 115, 291
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	24
Mva1269I	GAATGC	1 cut(s)	46
MwoI	GCNNNNNNNGC	5 cut(s)	161, 170, 295, 403, 412
NlaIII	CATG	2 cut(s)	223, 287
PagI	TCATGA	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	8
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PctI	GAATGC	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	44
PspEI	GGTNACC	1 cut(s)	276
RsaI	GTAC	4 cut(s)	28, 228, 377, 387
RsaNI	GTAC	4 cut(s)	27, 227, 376, 386
SaqAI	TTAA	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	101, 342
SfaNI	GCATC	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	2 cut(s)	157, 196
SseBI	AGGCCT	1 cut(s)	8
SsiI	CCGC	2 cut(s)	24, 171
StuI	AGGCCT	1 cut(s)	8
TaaI	ACNGT	2 cut(s)	209, 411
TaiI	ACGT	5 cut(s)	87, 232, 330, 345, 381
TaqI	TCGA	2 cut(s)	12, 48
TasI	AATT	2 cut(s)	157, 196
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TspDTI	ATGAA	2 cut(s)	58, 250
XagI	CCTNNNNNAGG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	157
XmnI	GAANNNNTTC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.