Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Forward (+)

31814442 .. 31815879

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGACCTCGCCCTCCCGCAGACCTCCAACCTACTCCGCTCCCTCCACGAGCACACGCTATATACCGCAGCATTTGGTGAGACTGTTGCAAATTATTGTGGACGGTAACTGCGACATGGGTGTACGTCAGGTTGCCAGCATCCATTTCAAGAACTTCATTGGAAAGAACTGGTTACCTCATGAGCCAGATGAGCAGAATAAGATATCACAAGCTGACAAAGACGTGGTTAGAGAGCACGTTCTTGTCTTTGTTACACAGGTTCCCCCATTGTTAAGGGTACAACTGGGTGAGTGCCTAAAGACAATTATTTATGTCTATTACCCTGAGCGGTGGCCACGACTTTTAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031047 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko04013 map04013

Pfam Domains

Protein Families

Cse1 IBN_N

Protein Analysis

116

Amino Acids

13.47

Weight (kDa)

9.03

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	21 - 83	1.4e-11	Importin-beta N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	38, 328
AciI	CCGC	4 cut(s)	16, 36, 65, 328
AcoI	YGGCCR	1 cut(s)	332
AfaI	GTAC	2 cut(s)	123, 279
AgsI	TTSAA	1 cut(s)	148
AjiI	CACGTC	1 cut(s)	223
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw21I	GWGCWC	2 cut(s)	53, 237
Alw26I	GTCTC	1 cut(s)	73
AoxI	GGCC	1 cut(s)	332
ApeKI	GCWGC	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	88, 299
BalI	TGGCCA	1 cut(s)	334
BauI	CACGAG	1 cut(s)	46
Bbv12I	GWGCWC	2 cut(s)	53, 237
BbvI	GCAGC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	1 cut(s)	349
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
BmgBI	CACGTC	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	261
BmrI	ACTGGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	324
Bse1I	ACTGG	2 cut(s)	173, 288
BseGI	GGATG	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	2 cut(s)	173, 288
BseXI	GCAGC	1 cut(s)	79
BshFI	GGCC	1 cut(s)	334
BsiHKAI	GWGCWC	2 cut(s)	53, 237
BsmAI	GTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	334
Bsp1286I	GDGCHC	2 cut(s)	53, 237
BspACI	CCGC	4 cut(s)	16, 36, 65, 328
BspANI	GGCC	1 cut(s)	334
BspCNI	CTCAG	1 cut(s)	316
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	261
BsrBI	CCGCTC	2 cut(s)	38, 328
BsrI	ACTGG	2 cut(s)	173, 288
BssSI	CACGAG	1 cut(s)	46
Bst2BI	CACGAG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	84, 104
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	1 cut(s)	324
BstEII	GGTNACC	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	138
BstMAI	GTCTC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstPI	GGTNACC	1 cut(s)	171
BstV1I	GCAGC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	334
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	136
CciI	TCATGA	1 cut(s)	178
Csp6I	GTAC	2 cut(s)	122, 278
CviAII	CATG	2 cut(s)	115, 179
CviJI	RGCY	3 cut(s)	184, 212, 334
CviKI_1	RGCY	3 cut(s)	184, 212, 334
CviQI	GTAC	2 cut(s)	122, 278
DdeI	CTNAG	1 cut(s)	324
EaeI	YGGCCR	1 cut(s)	332
Eco32I	GATATC	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	171
EcoO65I	GGTNACC	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	204
FaeI	CATG	2 cut(s)	118, 182
FaiI	YATR	5 cut(s)	60, 62, 116, 180, 312
FatI	CATG	2 cut(s)	114, 178
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	1 cut(s)	349
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	334
Hin1II	CATG	2 cut(s)	118, 182
HphI	GGTGA	2 cut(s)	88, 299
Hpy166II	GTNNAC	2 cut(s)	100, 122
Hpy188III	TCNNGA	2 cut(s)	148, 179
Hpy8I	GTNNAC	2 cut(s)	100, 122
HpyCH4III	ACNGT	2 cut(s)	84, 104
HpyCH4IV	ACGT	3 cut(s)	124, 222, 237
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	324
HpySE526I	ACGT	3 cut(s)	124, 222, 237
Hsp92II	CATG	2 cut(s)	118, 182
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	7 cut(s)	113, 148, 154, 198, 242, 269, 336
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	1 cut(s)	349
MaeII	ACGT	3 cut(s)	124, 222, 237
MaeIII	GTNAC	3 cut(s)	104, 171, 250
MbiI	CCGCTC	2 cut(s)	38, 328
MhlI	GDGCHC	2 cut(s)	53, 237
MlsI	TGGCCA	1 cut(s)	334
MluCI	AATT	2 cut(s)	90, 303
MluNI	TGGCCA	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	5 cut(s)	16, 22, 33, 52, 186
Mox20I	TGGCCA	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	334
MseI	TTAA	1 cut(s)	272
Msp20I	TGGCCA	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	118, 182
NlaIV	GGNNCC	1 cut(s)	261
PagI	TCATGA	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	69
PspEI	GGTNACC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	261
RsaI	GTAC	2 cut(s)	123, 279
RsaNI	GTAC	2 cut(s)	122, 278
SaqAI	TTAA	1 cut(s)	272
SatI	GCNGC	1 cut(s)	68
SduI	GDGCHC	2 cut(s)	53, 237
SfaNI	GCATC	1 cut(s)	147
Sse9I	AATT	2 cut(s)	90, 303
SsiI	CCGC	4 cut(s)	16, 36, 65, 328
SspMI	CTAG	1 cut(s)	349
TaaI	ACNGT	2 cut(s)	84, 104
TaiI	ACGT	3 cut(s)	127, 225, 240
TasI	AATT	2 cut(s)	90, 303
Tru1I	TTAA	1 cut(s)	272
Tru9I	TTAA	1 cut(s)	272
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	1 cut(s)	145
XspI	CTAG	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.