Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006317.1

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Forward (+)

7134 .. 8350

Gene Structure 1217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006317.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggagcagagcttttcttaccgcagatcttctttttcttttgtctctgatgtttcacgtttgtccgaatctcacgactcccttctcatcaccttcatcaagctctacgacctcgccctcccgcagacctccaacctactctgctccctccacgagcacacacttgaggtcagctccgccgactacaaccccacgcgcatcgactcgttgttcacctcctcgtgggacgacaccgtgaagctctggatcgtcaatcgccccgcctccatttgcaccttcaaggagcacgcctactgcgtctactccgctgcctttggtgtgaagagctcagaagctcgttctgattgtcaatggaggccttcgagacctccagcgattcagtatataccgcatcatttggtgagactgttgcaaattattgtggacggtaactgcgacatgggtgtacgtcaggttgccagcatccatttcaagaacttcattggaaagaactggttacctcatgagccagatatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0031461 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043574 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

WD40

Protein Analysis

172

Amino Acids

19.71

Weight (kDa)

6.43

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	196
AciI	CCGC	6 cut(s)	22, 122, 177, 261, 306, 389
AclWI	GGATC	1 cut(s)	254
AfaI	GTAC	1 cut(s)	447
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	280, 472
AluBI	AGCT	6 cut(s)	12, 103, 174, 241, 327, 335
AluI	AGCT	6 cut(s)	12, 103, 174, 241, 327, 335
Alw21I	GWGCWC	3 cut(s)	159, 288, 329
Alw26I	GTCTC	3 cut(s)	49, 358, 397
AlwI	GGATC	1 cut(s)	254
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	198
AsuHPI	GGTGA	3 cut(s)	82, 205, 412
BanII	GRGCYC	1 cut(s)	329
BauI	CACGAG	2 cut(s)	152, 220
Bbv12I	GWGCWC	3 cut(s)	159, 288, 329
BbvI	GCAGC	1 cut(s)	295
BcoDI	GTCTC	3 cut(s)	49, 358, 397
BglII	AGATCT	1 cut(s)	26
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
BmsI	GCATC	3 cut(s)	207, 400, 471
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BpmI	CTGGAG	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse1I	ACTGG	1 cut(s)	497
BseGI	GGATG	1 cut(s)	462
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	358
BsiHKAI	GWGCWC	3 cut(s)	159, 288, 329
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	3 cut(s)	49, 358, 397
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	358
Bso31I	GGTCTC	1 cut(s)	358
Bsp1286I	GDGCHC	3 cut(s)	159, 288, 329
Bsp143I	GATC	2 cut(s)	26, 246
BspACI	CCGC	6 cut(s)	22, 122, 177, 261, 306, 389
BspANI	GGCC	1 cut(s)	358
BspCNI	CTCAG	1 cut(s)	341
BspFNI	CGCG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	502
BspPI	GGATC	1 cut(s)	254
BspQI	GCTCTTC	1 cut(s)	317
BspTNI	GGTCTC	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	497
BssMI	GATC	2 cut(s)	26, 246
BssSI	CACGAG	2 cut(s)	152, 220
Bst2BI	CACGAG	2 cut(s)	152, 220
Bst4CI	ACNGT	3 cut(s)	235, 408, 428
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	288, 460
BstDEI	CTNAG	1 cut(s)	328
BstEII	GGTNACC	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	462
BstFNI	CGCG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	2 cut(s)	29, 249
BstMAI	GTCTC	3 cut(s)	49, 358, 397
BstMBI	GATC	2 cut(s)	26, 246
BstPI	GGTNACC	1 cut(s)	495
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	295
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	462
Cac8I	GCNNGC	2 cut(s)	288, 460
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	1 cut(s)	198
CseI	GACGC	1 cut(s)	286
Csp6I	GTAC	1 cut(s)	446
CviAII	CATG	2 cut(s)	439, 503
CviJI	RGCY	8 cut(s)	12, 103, 174, 241, 327, 335, 358, 508
CviKI_1	RGCY	8 cut(s)	12, 103, 174, 241, 327, 335, 358, 508
CviQI	GTAC	1 cut(s)	446
DdeI	CTNAG	1 cut(s)	328
DpnI	GATC	2 cut(s)	28, 248
DpnII	GATC	2 cut(s)	26, 246
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
EciI	GGCGGA	1 cut(s)	166
Ecl136II	GAGCTC	1 cut(s)	327
Eco147I	AGGCCT	1 cut(s)	358
Eco24I	GRGCYC	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	327
Eco91I	GGTNACC	1 cut(s)	495
EcoICRI	GAGCTC	1 cut(s)	327
EcoO65I	GGTNACC	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	2 cut(s)	442, 506
FaiI	YATR	5 cut(s)	384, 386, 440, 504, 515
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	2 cut(s)	438, 502
FauI	CCCGC	2 cut(s)	129, 268
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	309
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	358
HgaI	GACGC	1 cut(s)	286
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	2 cut(s)	442, 506
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	68, 77, 203, 376
HphI	GGTGA	3 cut(s)	82, 205, 412
Hpy166II	GTNNAC	4 cut(s)	213, 301, 424, 446
Hpy188I	TCNGA	4 cut(s)	49, 67, 331, 343
Hpy188III	TCNNGA	5 cut(s)	74, 244, 363, 472, 503
Hpy8I	GTNNAC	4 cut(s)	213, 301, 424, 446
HpyAV	CCTTC	4 cut(s)	92, 103, 286, 369
HpyCH4III	ACNGT	3 cut(s)	235, 408, 428
HpyCH4IV	ACGT	2 cut(s)	58, 448
HpyCH4V	TGCA	2 cut(s)	273, 412
HpyF3I	CTNAG	1 cut(s)	328
HpySE526I	ACGT	2 cut(s)	58, 448
Hsp92II	CATG	2 cut(s)	442, 506
HspAI	GCGC	1 cut(s)	196
Kzo9I	GATC	2 cut(s)	26, 246
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	4 cut(s)	4, 149, 179, 283
LpnPI	CCDG	5 cut(s)	229, 384, 437, 472, 478
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	3 cut(s)	207, 400, 471
MaeII	ACGT	2 cut(s)	58, 448
MaeIII	GTNAC	2 cut(s)	428, 495
MalI	GATC	2 cut(s)	28, 248
MboI	GATC	2 cut(s)	26, 246
MboII	GAAGA	2 cut(s)	21, 334
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	3 cut(s)	159, 288, 329
MluCI	AATT	1 cut(s)	414
MlyI	GAGTC	2 cut(s)	71, 197
MmeI	TCCRAC	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	308
MvnI	CGCG	1 cut(s)	196
NdeII	GATC	2 cut(s)	26, 246
NlaIII	CATG	2 cut(s)	442, 506
PagI	TCATGA	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	2 cut(s)	294, 432
PfeI	GAWTC	2 cut(s)	68, 376
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	2 cut(s)	71, 197
PpsI	GAGTC	2 cut(s)	71, 197
Psp124BI	GAGCTC	1 cut(s)	329
PspEI	GGTNACC	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	26
RsaI	GTAC	1 cut(s)	447
RsaNI	GTAC	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	329
SapI	GCTCTTC	1 cut(s)	317
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	2 cut(s)	26, 246
SchI	GAGTC	2 cut(s)	71, 197
SduI	GDGCHC	3 cut(s)	159, 288, 329
SfaNI	GCATC	3 cut(s)	207, 400, 471
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	414
SseBI	AGGCCT	1 cut(s)	358
SsiI	CCGC	6 cut(s)	22, 122, 177, 261, 306, 389
SstI	GAGCTC	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	358
TaaI	ACNGT	3 cut(s)	235, 408, 428
TaiI	ACGT	2 cut(s)	61, 451
TaqI	TCGA	2 cut(s)	201, 362
TasI	AATT	1 cut(s)	414
TfiI	GAWTC	2 cut(s)	68, 376
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	85, 469
XmiI	GTMKAC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.