Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Reverse (-)

54217751 .. 54218323

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG382800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCGTGAGGTCAGCTCCGCCGACTACAACCCCACGCGCTGCGACTCGTTGTTCACCGCCTCGTGGGAAGAAACCGTGAAGCTCTGGACCGTCAACCGCCCCGCCTCCATTCGCACCTTCAAGGAGCACGCCTACTGCGTCTACTTCACCGCCTTTGGTGTGAAGAGCTCAGAAGCTCGTTCTGATTGTCAATGGAGGCCTTTGAGACCTCCAGCGATTCAGTATATACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0031461 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043574 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

WD40

Protein Analysis

77

Amino Acids

8.98

Weight (kDa)

8.55

Isoelectric Point (pI)

43.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	37
AciI	CCGC	5 cut(s)	18, 57, 97, 102, 150
AfiI	CCNNNNNNNGG	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	4 cut(s)	15, 82, 168, 176
AluI	AGCT	4 cut(s)	15, 82, 168, 176
Alw21I	GWGCWC	2 cut(s)	129, 170
Alw26I	GTCTC	1 cut(s)	199
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	1 cut(s)	39
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	46, 139
AvaII	GGWCC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	61
Bbv12I	GWGCWC	2 cut(s)	129, 170
BbvI	GCAGC	1 cut(s)	26
BcoDI	GTCTC	1 cut(s)	199
BfmI	CTRYAG	1 cut(s)	230
BisI	GCNGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	41
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	87
BplI	GAGNNNNNCTC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	195
BsaI	GGTCTC	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	183
BseXI	GCAGC	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	199
BsiHKAI	GWGCWC	2 cut(s)	129, 170
BslI	CCNNNNNNNGG	1 cut(s)	63
BsmAI	GTCTC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	199
Bso31I	GGTCTC	1 cut(s)	199
Bsp1286I	GDGCHC	2 cut(s)	129, 170
BspACI	CCGC	5 cut(s)	18, 57, 97, 102, 150
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	37
BspQI	GCTCTTC	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	199
BssSI	CACGAG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	61
Bst4CI	ACNGT	3 cut(s)	76, 91, 231
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	230
BstUI	CGCG	1 cut(s)	37
BstV1I	GCAGC	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	129
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	1 cut(s)	87
CseI	GACGC	1 cut(s)	127
CviJI	RGCY	5 cut(s)	15, 82, 168, 176, 199
CviKI_1	RGCY	5 cut(s)	15, 82, 168, 176, 199
DdeI	CTNAG	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
EciI	GGCGGA	1 cut(s)	7
Ecl136II	GAGCTC	1 cut(s)	168
Eco147I	AGGCCT	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	170
Eco31I	GGTCTC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	87
Eco53kI	GAGCTC	1 cut(s)	168
EcoICRI	GAGCTC	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	170
FaiI	YATR	2 cut(s)	225, 227
FauI	CCCGC	1 cut(s)	109
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	40
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	40
GsuI	CTGGAG	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	199
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	39
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	44, 217
HphI	GGTGA	2 cut(s)	46, 139
Hpy166II	GTNNAC	3 cut(s)	54, 94, 142
Hpy188I	TCNGA	2 cut(s)	172, 184
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	3 cut(s)	54, 94, 142
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	3 cut(s)	76, 91, 231
HpyF3I	CTNAG	1 cut(s)	169
HspAI	GCGC	1 cut(s)	37
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	2 cut(s)	20, 124
LpnPI	CCDG	2 cut(s)	70, 225
Lsp1109I	GCAGC	1 cut(s)	26
MboII	GAAGA	2 cut(s)	80, 175
MhlI	GDGCHC	2 cut(s)	129, 170
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	4 cut(s)	70, 115, 189, 219
MvnI	CGCG	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	199
PciSI	GCTCTTC	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	41
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
Psp124BI	GAGCTC	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	158
SatI	GCNGC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	38
SduI	GDGCHC	2 cut(s)	129, 170
SetI	ASST	7 cut(s)	12, 17, 84, 119, 170, 178, 211
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	87
SseBI	AGGCCT	1 cut(s)	199
SsiI	CCGC	5 cut(s)	18, 57, 97, 102, 150
SstI	GAGCTC	1 cut(s)	170
StuI	AGGCCT	1 cut(s)	199
TaaI	ACNGT	3 cut(s)	76, 91, 231
TfiI	GAWTC	1 cut(s)	217
TseI	GCWGC	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.