Rh3BG144500

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003071
Physical Location & Seq
Forward (+)
12263186 .. 12265446
2261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG144500.1

Sequence Viewer

Length: 372 bp
ATGGAGGCCTCCAAGACCTCCAGTACAACCTTGAGGAATGCTTTTGGTAATGTTGCTTCAACAAGAACTTTGACTGGTGACCTTTCCAATCCATTGTTGGTTAAACCTCTTCAACCAGTTGTTGCGCCAGTGGCTACAGTAGCTCAGAAATCTGAAGCACCTGATCATCTTAATAATTTAGTTGGCGCTGGGTATCAATCATTTGAGAATGCTGTTTTGAAGAAACTTGCACAGAGACTTACAGCCCCGGCTGATATCGGTTTGTTGTTGGATATGCAGGGAACTGCTGTGGAGTTTCTCTCTCAACTATCTCAAGATAGCGCAGAGGAAGAACTCTTGGTGTTAATAGTGTTGAATAGTATTAGATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ RRM_1

Protein Analysis

123

Amino Acids

13.11

Weight (kDa)

4.99

Isoelectric Point (pI)

34.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 1 cut(s) 25
AgsI TTSAA 4 cut(s) 60, 113, 220, 355
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
Alw26I GTCTC 1 cut(s) 229
AoxI GGCC 1 cut(s) 6
AspLEI GCGC 3 cut(s) 127, 188, 323
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 89
BarI GAAGNNNNNNTAC 2 cut(s) 40, 72
BclI TGATCA 1 cut(s) 163
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 1 cut(s) 370
BfmI CTRYAG 1 cut(s) 135
BfoI RGCGCY 1 cut(s) 189
Bme1390I CCNGG 1 cut(s) 248
BmrFI CCNGG 1 cut(s) 248
BplI GAGNNNNNCTC 2 cut(s) 284, 316
BpmI CTGGAG 1 cut(s) 4
BpuEI CTTGAG 2 cut(s) 52, 297
BpuMI CCSGG 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 246
Bse1I ACTGG 4 cut(s) 21, 79, 116, 128
BseDI CCNNGG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 4 cut(s) 21, 79, 116, 128
BseYI CCCAGC 1 cut(s) 188
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 229
BsmI GAATGC 2 cut(s) 43, 214
BsnI GGCC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 163
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 157
BsrI ACTGG 4 cut(s) 21, 79, 116, 128
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 144
BstEII GGTNACC 1 cut(s) 77
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 3 cut(s) 127, 188, 323
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 131, 140
BstPI GGTNACC 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 135
CfoI GCGC 3 cut(s) 127, 188, 323
Csp6I GTAC 1 cut(s) 24
CviJI RGCY 5 cut(s) 8, 134, 143, 245, 251
CviKI_1 RGCY 5 cut(s) 8, 134, 143, 245, 251
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 8
Eco32I GATATC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 174
Eco91I GGTNACC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 77
EcoRV GATATC 1 cut(s) 256
FaiI YATR 1 cut(s) 275
FbaI TGATCA 1 cut(s) 163
FspBI CTAG 1 cut(s) 370
GlaI GCGC 3 cut(s) 126, 187, 322
GsaI CCCAGC 1 cut(s) 192
GsuI CTGGAG 1 cut(s) 4
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 248
HhaI GCGC 3 cut(s) 127, 188, 323
Hin6I GCGC 3 cut(s) 125, 186, 321
HinP1I GCGC 3 cut(s) 125, 186, 321
HpaII CCGG 1 cut(s) 248
HphI GGTGA 1 cut(s) 89
Hpy188I TCNGA 2 cut(s) 147, 154
Hpy188III TCNNGA 1 cut(s) 314
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 230, 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 140
HpyF3I CTNAG 1 cut(s) 144
HspAI GCGC 3 cut(s) 125, 186, 321
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 8 cut(s) 34, 60, 129, 141, 174, 174, 261, 263
MaeI CTAG 1 cut(s) 370
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 101, 232, 341
MluCI AATT 1 cut(s) 175
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 5 cut(s) 19, 27, 28, 117, 319
MseI TTAA 3 cut(s) 102, 171, 344
MspI CCGG 1 cut(s) 248
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 2 cut(s) 43, 214
MwoI GCNNNNNNNGC 2 cut(s) 131, 140
NciI CCSGG 1 cut(s) 248
NdeII GATC 1 cut(s) 163
NmuCI GTSAC 1 cut(s) 77
PceI AGGCCT 1 cut(s) 8
PctI GAATGC 2 cut(s) 43, 214
PspEI GGTNACC 1 cut(s) 77
PspFI CCCAGC 1 cut(s) 188
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 3 cut(s) 102, 171, 344
Sau3AI GATC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 248
SetI ASST 6 cut(s) 20, 32, 84, 109, 145, 163
SfcI CTRYAG 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 31, 312
SmoI CTYRAG 2 cut(s) 31, 312
Sse9I AATT 1 cut(s) 175
SseBI AGGCCT 1 cut(s) 8
SspMI CTAG 1 cut(s) 370
StuI AGGCCT 1 cut(s) 8
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 139
TasI AATT 1 cut(s) 175
TatI WGTACW 1 cut(s) 23
Tru1I TTAA 3 cut(s) 102, 171, 344
Tru9I TTAA 3 cut(s) 102, 171, 344
TscAI CASTG 1 cut(s) 135
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspRI CASTG 1 cut(s) 135
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XspI CTAG 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.