Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002398.1

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Reverse (-)

78505 .. 80212

Gene Structure 1708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002398.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

atgctcaaagattggcacaatgcaaacatgactttccgtaactgtatatccgaatctcaccactccctcctcatcaccttcgtcaagctctacgacctcgccctcccgcagacctccaacctactccgctccctccacgagcacacgcgtgaggtcagctccgccgactacaaccccacgcgccgcgactcgttgttcaccgccttgtgggaggacaccgtgaagctatggaccgtcgaccgccccgcctccattcgcaccttcaaggagcacctctactgtgtctactccgccgcctttggtgtgaagagctcggaagctcgttctaattgtcaatggaggcctttgagacctccagcgattcagtatataccgcagcatttggtgagactgttgcaaattattgtggaaggtaactgcgacatgggtgtacgtcaggttgccagcatccatttcaagaacttcattggaaagaactggttacctcatgagccagatgagcataataagatatcacaagctgacaaagacgtggttagagagcacgttcttgtctttgttacacaggttcccccattgttaaggtactttgtttgctgtttcggctactgtggcaataatgggcttgtgactgcacgcagattgtctttatgttttgttttaagttgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031047 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko04013 map04013

Pfam Domains

Protein Families

Cse1 IBN_N

Protein Analysis

223

Amino Acids

25.79

Weight (kDa)

8.74

Isoelectric Point (pI)

37.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	129
AccI	GTMKAC	2 cut(s)	237, 285
AccII	CGCG	3 cut(s)	148, 181, 186
AfaI	GTAC	2 cut(s)	432, 587
AfiI	CCNNNNNNNGG	1 cut(s)	207
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	2 cut(s)	265, 457
AjiI	CACGTC	1 cut(s)	532
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	6 cut(s)	88, 159, 226, 312, 320, 521
AluI	AGCT	6 cut(s)	88, 159, 226, 312, 320, 521
Alw21I	GWGCWC	4 cut(s)	144, 273, 314, 546
Alw26I	GTCTC	2 cut(s)	343, 382
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	1 cut(s)	376
AspLEI	GCGC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	231
AsuHPI	GGTGA	4 cut(s)	50, 67, 190, 397
AvaII	GGWCC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	137
Bbv12I	GWGCWC	4 cut(s)	144, 273, 314, 546
BbvI	GCAGC	1 cut(s)	388
BcoDI	GTCTC	2 cut(s)	343, 382
BisI	GCNGC	3 cut(s)	184, 294, 377
BlsI	GCNGC	3 cut(s)	185, 295, 378
Bme18I	GGWCC	1 cut(s)	231
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	1 cut(s)	231
BmiI	GGNNCC	1 cut(s)	570
BmsI	GCATC	1 cut(s)	456
BplI	GAGNNNNNCTC	2 cut(s)	143, 175
BpmI	CTGGAG	1 cut(s)	339
BsaI	GGTCTC	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	482
BseGI	GGATG	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	207
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	3 cut(s)	148, 181, 186
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	4 cut(s)	144, 273, 314, 546
BslI	CCNNNNNNNGG	1 cut(s)	207
BsmAI	GTCTC	2 cut(s)	343, 382
BsnI	GGCC	1 cut(s)	343
Bso31I	GGTCTC	1 cut(s)	343
Bsp1286I	GDGCHC	4 cut(s)	144, 273, 314, 546
BspANI	GGCC	1 cut(s)	343
BspFNI	CGCG	3 cut(s)	148, 181, 186
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	570
BspQI	GCTCTTC	1 cut(s)	302
BspTNI	GGTCTC	1 cut(s)	343
BsrBI	CCGCTC	1 cut(s)	129
BsrI	ACTGG	1 cut(s)	482
BssSI	CACGAG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	137
Bst4CI	ACNGT	6 cut(s)	44, 220, 235, 281, 393, 611
Bst6I	CTCTTC	1 cut(s)	302
BstC8I	GCNNGC	2 cut(s)	445, 637
BstEII	GGTNACC	1 cut(s)	480
BstF5I	GGATG	1 cut(s)	447
BstFNI	CGCG	3 cut(s)	148, 181, 186
BstHHI	GCGC	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	343, 382
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	499, 603, 612
BstPI	GGTNACC	1 cut(s)	480
BstUI	CGCG	3 cut(s)	148, 181, 186
BstV1I	GCAGC	1 cut(s)	388
BsuRI	GGCC	1 cut(s)	343
BtrI	CACGTC	1 cut(s)	532
BtsCI	GGATG	1 cut(s)	447
Cac8I	GCNNGC	2 cut(s)	445, 637
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	431, 586
CviAII	CATG	3 cut(s)	28, 424, 488
CviQI	GTAC	2 cut(s)	431, 586
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
EciI	GGCGGA	2 cut(s)	151, 280
Ecl136II	GAGCTC	1 cut(s)	312
Eco147I	AGGCCT	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	343
Eco32I	GATATC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	312
Eco91I	GGTNACC	1 cut(s)	480
EcoICRI	GAGCTC	1 cut(s)	312
EcoO65I	GGTNACC	1 cut(s)	480
EcoRV	GATATC	1 cut(s)	513
EcoT38I	GRGCYC	1 cut(s)	314
FaeI	CATG	3 cut(s)	31, 427, 491
FaiI	YATR	9 cut(s)	29, 47, 229, 369, 371, 425, 489, 504, 652
FatI	CATG	3 cut(s)	27, 423, 487
FauI	CCCGC	2 cut(s)	114, 253
FblI	GTMKAC	2 cut(s)	237, 285
Fnu4HI	GCNGC	3 cut(s)	184, 294, 377
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	184, 294, 377
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	3 cut(s)	184, 294, 377
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	31, 427, 491
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	53, 188, 361
HphI	GGTGA	4 cut(s)	50, 67, 190, 397
Hpy166II	GTNNAC	4 cut(s)	198, 238, 286, 431
Hpy188I	TCNGA	2 cut(s)	52, 316
Hpy188III	TCNNGA	2 cut(s)	457, 488
Hpy8I	GTNNAC	4 cut(s)	198, 238, 286, 431
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	88, 271, 404
HpyCH4III	ACNGT	6 cut(s)	44, 220, 235, 281, 393, 611
HpyCH4IV	ACGT	3 cut(s)	433, 531, 546
HpyCH4V	TGCA	3 cut(s)	23, 397, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	499, 603, 612
HpySE526I	ACGT	3 cut(s)	433, 531, 546
Hsp92II	CATG	3 cut(s)	31, 427, 491
HspAI	GCGC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	3 cut(s)	134, 164, 268
LpnPI	CCDG	6 cut(s)	369, 422, 457, 463, 507, 551
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	456
MaeII	ACGT	3 cut(s)	433, 531, 546
MaeIII	GTNAC	5 cut(s)	38, 413, 480, 559, 628
MbiI	CCGCTC	1 cut(s)	129
MboII	GAAGA	1 cut(s)	319
MhlI	GDGCHC	4 cut(s)	144, 273, 314, 546
MluCI	AATT	2 cut(s)	328, 399
MluI	ACGCGT	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	141
MseI	TTAA	2 cut(s)	581, 662
MslI	CAYNNNNRTG	1 cut(s)	147
MvnI	CGCG	3 cut(s)	148, 181, 186
MwoI	GCNNNNNNNGC	3 cut(s)	499, 603, 612
NlaIII	CATG	3 cut(s)	31, 427, 491
NlaIV	GGNNCC	1 cut(s)	570
NmuCI	GTSAC	1 cut(s)	628
OliI	CACNNNNGTG	1 cut(s)	147
PagI	TCATGA	1 cut(s)	487
PceI	AGGCCT	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	53, 361
PkrI	GCNGC	3 cut(s)	185, 295, 378
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	314
PspEI	GGTNACC	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	1 cut(s)	231
RsaI	GTAC	2 cut(s)	432, 587
RsaNI	GTAC	2 cut(s)	431, 586
RseI	CAYNNNNRTG	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	236
SapI	GCTCTTC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	581, 662
SatI	GCNGC	3 cut(s)	184, 294, 377
Sau96I	GGNCC	1 cut(s)	231
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	4 cut(s)	144, 273, 314, 546
SfaNI	GCATC	1 cut(s)	456
SinI	GGWCC	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	2 cut(s)	328, 399
SseBI	AGGCCT	1 cut(s)	343
SstI	GAGCTC	1 cut(s)	314
StuI	AGGCCT	1 cut(s)	343
TaaI	ACNGT	6 cut(s)	44, 220, 235, 281, 393, 611
TaiI	ACGT	3 cut(s)	436, 534, 549
TaqI	TCGA	1 cut(s)	237
TasI	AATT	2 cut(s)	328, 399
TauI	GCSGC	2 cut(s)	186, 296
TfiI	GAWTC	2 cut(s)	53, 361
Tru1I	TTAA	2 cut(s)	581, 662
Tru9I	TTAA	2 cut(s)	581, 662
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	1 cut(s)	454
TspGWI	ACGGA	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	231
XmiI	GTMKAC	2 cut(s)	237, 285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.