Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Reverse (-)

57621227 .. 57625963

Gene Structure 4737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG348500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAAGGCTGCTTCTTCATCGATTGAGCCATATATGGATTGCAAAGACAACCCCACGCACCACGACTCGTTCCTCACCGCCTCGTGGGACGACACCGTGAAGCTCTGGACCGTCAACAACCCAGCCTCCGTCCGCACCTTCAAGGAGCACGCCTACTGCGTCTACTCCGCCATCTTTGGTGTGAAGAGCTCGGAAGCTCGTTCCGGTCGTCAATGGAGGCCTCCGAGACCTCCAGCGGTACAACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006605 GO:0006625 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016043 GO:0031461 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043574 GO:0044424 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072662 GO:0072663 GO:0080008 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

WD40

Protein Analysis

82

Amino Acids

9.25

Weight (kDa)

8.69

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	4 cut(s)	78, 133, 168, 236
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	84
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	3 cut(s)	103, 189, 197
AluI	AGCT	3 cut(s)	103, 189, 197
Alw21I	GWGCWC	2 cut(s)	150, 191
Alw26I	GTCTC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	218
ApeKI	GCWGC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	108
BanII	GRGCYC	1 cut(s)	191
BauI	CACGAG	1 cut(s)	82
Bbv12I	GWGCWC	2 cut(s)	150, 191
BccI	CCATC	1 cut(s)	179
BcoDI	GTCTC	1 cut(s)	220
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
Bme18I	GGWCC	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	216
Bsa29I	ATCGAT	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	220
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseYI	CCCAGC	1 cut(s)	121
Bsh1285I	CGRYCG	1 cut(s)	208
BshFI	GGCC	1 cut(s)	220
BshVI	ATCGAT	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	208
BsiHKAI	GWGCWC	2 cut(s)	150, 191
BsiSI	CCGG	1 cut(s)	204
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	220
Bso31I	GGTCTC	1 cut(s)	220
Bsp1286I	GDGCHC	2 cut(s)	150, 191
BspACI	CCGC	4 cut(s)	78, 133, 168, 236
BspANI	GGCC	1 cut(s)	220
BspDI	ATCGAT	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	220
BssSI	CACGAG	1 cut(s)	82
Bst2BI	CACGAG	1 cut(s)	82
Bst4CI	ACNGT	2 cut(s)	97, 112
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	220
BstMCI	CGRYCG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	220
BsuTUI	ATCGAT	1 cut(s)	20
Cac8I	GCNNGC	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	108
ClaI	ATCGAT	1 cut(s)	20
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	239
CviJI	RGCY	7 cut(s)	8, 28, 103, 125, 189, 197, 220
CviKI_1	RGCY	7 cut(s)	8, 28, 103, 125, 189, 197, 220
CviQI	GTAC	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	157
Ecl136II	GAGCTC	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	191
Eco31I	GGTCTC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	191
FaiI	YATR	3 cut(s)	31, 33, 35
FaqI	GGGAC	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	9
FriOI	GRGCYC	1 cut(s)	191
Fsp4HI	GCNGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	9
GsaI	CCCAGC	1 cut(s)	125
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	204
HgaI	GACGC	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	204
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	115, 163
Hpy188I	TCNGA	2 cut(s)	193, 225
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	115, 163
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	2 cut(s)	97, 112
HpyCH4V	TGCA	1 cut(s)	42
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	3 cut(s)	91, 135, 217
MboII	GAAGA	2 cut(s)	6, 196
MhlI	GDGCHC	2 cut(s)	150, 191
MlyI	GAGTC	1 cut(s)	59
MnlI	CCTC	6 cut(s)	83, 91, 136, 210, 231, 240
MspA1I	CMGCKG	1 cut(s)	236
MspI	CCGG	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 205
PkrI	GCNGC	1 cut(s)	10
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	191
PspFI	CCCAGC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	108
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
SacI	GAGCTC	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	179
SatI	GCNGC	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	108
SchI	GAGTC	1 cut(s)	59
SduI	GDGCHC	2 cut(s)	150, 191
SetI	ASST	6 cut(s)	105, 140, 191, 199, 232, 247
SinI	GGWCC	1 cut(s)	108
SseBI	AGGCCT	1 cut(s)	220
SsiI	CCGC	4 cut(s)	78, 133, 168, 236
SstI	GAGCTC	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	220
TaaI	ACNGT	2 cut(s)	97, 112
TaqI	TCGA	1 cut(s)	20
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	6, 17
TspGWI	ACGGA	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.