Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003071

Physical Location & Seq

Genomic Coordinates Forward (+)

4540852 .. 4541264

Gene Structure 413 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54732

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGTATATTCAGTATATACCGCAGCATTTGGTGAGACTGTTGCAAATTATTATGGACGGTAACTGCGACATGGGTGTACGTCAGGTTGCCAGCATCCATTTCAAGAACTTCATTGGAAAGAACTGGTTACCTCATAAGCCAGATGAGCATAATAAGATATCACAAGCTGACAAAGACGTGGTTAGAGAGCACGTTCTTGTCTTTGTTACACAGGTTCCCCCATTGTACGTTAAGGTACTTCGTTTGCTGTTTCGGCTACTGTGGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005829 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007154 GO:0007165 GO:0008104 GO:0008150 GO:0008565 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0015031 GO:0015833 GO:0016043 GO:0016441 GO:0016458 GO:0017038 GO:0019222 GO:0022607 GO:0022613 GO:0022618 GO:0023052 GO:0031047 GO:0031967 GO:0031975 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0034622 GO:0035194 GO:0035195 GO:0035280 GO:0040029 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0050789 GO:0050794 GO:0050896 GO:0051169 GO:0051170 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0070727 GO:0070922 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0072594

KEGG Pathways

Metabolic & Signaling

ko04013 map04013

Pfam Domains

Protein Families

Cse1 IBN_N

Protein Analysis

89

Amino Acids

10.56

Weight (kDa)

9.52

Isoelectric Point (pI)

26.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBN_N	PF03810	4 - 68	3e-12	Importin-beta N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003071)

Species	Orthologous Gene IDs
malus_domestica	MD10G1127700.v1.1
rosa_chinensis	RchiOBHm_Chr1g0316911 RchiOBHm_Chr1g0316961 RchiOBHm_Chr3g0465821 RchiOBHm_Chr5g0002481
rosa_multiflora	Rmu_sc0002398.1_g000020 Rmu_sc0004165.1_g000048 Rmu_sc0006317.1_g000003
rosa_roxburghii	Rroxscaffold_3G00222320 Rroxscaffold_3G00259850
rosa_rugosa	Rorug05G0291900 Rorug05G0455000
rosa_samantha	Rh1AG024500 Rh1AG113500 Rh1CG022800 Rh1DG304100 Rh2AG339700 Rh2AG378600 Rh2BG382800 Rh2CG279300 Rh3AG080500 Rh3BG082300 Rh3BG144500 Rh3CG145900 Rh4AG080000 Rh4CG086100 Rh5AG181300 Rh5AG182500 Rh5AG348500 Rh5AG464400 Rh5BG211500 Rh5BG470500 Rh5BG482100 Rh6AG330100 Rh7AG171000 Rh7AG472300 Rh7CG489500
rosa_wichuraiana	Rw5G022830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	263
AfaI	GTAC	3 cut(s)	78, 227, 237
AgsI	TTSAA	1 cut(s)	103
AjiI	CACGTC	1 cut(s)	178
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	28
AoxI	GGCC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	22
AsuHPI	GGTGA	1 cut(s)	43
BalI	TGGCCA	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
BmgBI	CACGTC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	216
BmsI	GCATC	1 cut(s)	102
Bse1I	ACTGG	1 cut(s)	128
BseGI	GGATG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	128
BseXI	GCAGC	1 cut(s)	34
BshFI	GGCC	1 cut(s)	265
BsiHKAI	GWGCWC	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	265
Bsp1286I	GDGCHC	1 cut(s)	192
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	128
Bst4CI	ACNGT	3 cut(s)	39, 59, 261
BstC8I	GCNNGC	1 cut(s)	91
BstEII	GGTNACC	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	93
BstMAI	GTCTC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 253, 262
BstPI	GGTNACC	1 cut(s)	126
BstV1I	GCAGC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	265
BtrI	CACGTC	1 cut(s)	178
BtsCI	GGATG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	77, 226, 236
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	4 cut(s)	139, 167, 256, 265
CviKI_1	RGCY	4 cut(s)	139, 167, 256, 265
CviQI	GTAC	3 cut(s)	77, 226, 236
EaeI	YGGCCR	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	159
Eco91I	GGTNACC	1 cut(s)	126
EcoO65I	GGTNACC	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	159
FaeI	CATG	1 cut(s)	73
FaiI	YATR	8 cut(s)	6, 15, 17, 53, 71, 135, 150, 268
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	23
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	23
HaeIII	GGCC	1 cut(s)	265
Hin1II	CATG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	77
HpyCH4III	ACNGT	3 cut(s)	39, 59, 261
HpyCH4IV	ACGT	4 cut(s)	79, 177, 192, 228
HpyCH4V	TGCA	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 253, 262
HpySE526I	ACGT	4 cut(s)	79, 177, 192, 228
Hsp92II	CATG	1 cut(s)	73
LpnPI	CCDG	5 cut(s)	68, 103, 109, 153, 197
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	102
MaeII	ACGT	4 cut(s)	79, 177, 192, 228
MaeIII	GTNAC	3 cut(s)	59, 126, 205
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	265
MluCI	AATT	1 cut(s)	45
MluNI	TGGCCA	1 cut(s)	265
MnlI	CCTC	1 cut(s)	141
Mox20I	TGGCCA	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	265
MseI	TTAA	1 cut(s)	231
Msp20I	TGGCCA	1 cut(s)	265
MwoI	GCNNNNNNNGC	3 cut(s)	145, 253, 262
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	1 cut(s)	216
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	216
RsaI	GTAC	3 cut(s)	78, 227, 237
RsaNI	GTAC	3 cut(s)	77, 226, 236
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	9 cut(s)	82, 87, 133, 169, 180, 195, 216, 231, 237
SfaNI	GCATC	1 cut(s)	102
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	1 cut(s)	20
TaaI	ACNGT	3 cut(s)	39, 59, 261
TaiI	ACGT	4 cut(s)	82, 180, 195, 231
TasI	AATT	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseI	GCWGC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.