Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003681

Physical Location & Seq

Genomic Coordinates Forward (+)

21382736 .. 21383113

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1253100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGTAGATACTTTTACATTGGTGTCTTCATCCATCTCTCAACAAACCAATCTGAAATTACCAAAATGTTTTCCTTTGATCTAAAAATTCTACTCACGGTAGCATCCTCCTTGTTCTCAGCCTATACCTCCGTTGAAGGATCCATGGTGTTGGTCCGTCCCATGGCCAAAAAGCTCATCCCCGTCGTCCGCTCATACGTCTACTCAAAACTCAAATCCCTTTTCACTCCACTCTCCTTTAACCTCACTTTCATCATTGACGAGCTCTACGGAGTGGCACGCAACCAGGTCTATGATACCGCTAAGGTCTACCTCCAAACCATTGGCACCAGTCTTAGCATTCAACGCCTACGAGTCGAAAAAACGCATCGCCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

126

Amino Acids

14.36

Weight (kDa)

9.89

Isoelectric Point (pI)

35.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	63 - 123	3.2e-10	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12131 FvH4_1g12133 FvH4_1g12134
malus_domestica	MD15G1253100.v1.1 MD15G1253200.v1.1 MD15G1253400.v1.1 MD15G1254000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0099811 RchiOBHm_Chr2g0099831 RchiOBHm_Chr2g0099841
rosa_laevigata	RLG00000016916 RLG00000016917 RLG00000016918
rosa_multiflora	Rmu_co8276881.1_g000001 Rmu_sc0004158.1_g000001 Rmu_sc0004158.1_g000002 Rmu_sc0004158.1_g000003 Rmu_sc0004158.1_g000004 Rmu_sc0008864.1_g000006 Rmu_sc0008864.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142760
rosa_rugosa	Rorug02G0083400.1 Rorug02G0083500
rosa_samantha	Rh2BG135700 Rh2BG135900 Rh2BG136000 Rh2CG137300 Rh2CG137500 Rh2CG137600 Rh2DG137700 Rh2DG137900 Rh2DG138000
rosa_wichuraiana	Rw2G010280 Rw2G010300 Rw2G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccBSI	CCGCTC	1 cut(s)	192
AccI	GTMKAC	2 cut(s)	201, 309
AciI	CCGC	2 cut(s)	190, 300
AclWI	GGATC	2 cut(s)	135, 148
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	2 cut(s)	137, 344
AjnI	CCWGG	1 cut(s)	285
AluBI	AGCT	2 cut(s)	175, 265
AluI	AGCT	2 cut(s)	175, 265
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	135, 148
AoxI	GGCC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
BalI	TGGCCA	1 cut(s)	167
BamHI	GGATCC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	1 cut(s)	267
BccI	CCATC	1 cut(s)	42
BciT130I	CCWGG	1 cut(s)	287
Bme1390I	CCNGG	1 cut(s)	287
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	2 cut(s)	142, 328
BmrFI	CCNGG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	303
BsaJI	CCNNGG	2 cut(s)	144, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	287
BseDI	CCNNGG	2 cut(s)	144, 162
BseGI	GGATG	3 cut(s)	30, 104, 177
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	2 cut(s)	79, 140
Bsp19I	CCATGG	2 cut(s)	144, 162
BspACI	CCGC	2 cut(s)	190, 300
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	142, 328
BspPI	GGATC	2 cut(s)	135, 148
BspT107I	GGYRCC	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	144, 162
BssMI	GATC	2 cut(s)	79, 140
BssT1I	CCWWGG	2 cut(s)	144, 162
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	100
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	3 cut(s)	118, 303, 335
BstDSI	CCRYGG	2 cut(s)	144, 162
BstF5I	GGATG	3 cut(s)	30, 104, 177
BstKTI	GATC	2 cut(s)	82, 143
BstMBI	GATC	2 cut(s)	79, 140
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstNI	CCWGG	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	285
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	140
BstXI	CCANNNNNNTGG	2 cut(s)	151, 323
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	2 cut(s)	144, 162
BtgZI	GCGATG	1 cut(s)	353
BtsCI	GGATG	3 cut(s)	30, 104, 177
Cac8I	GCNNGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	154
CsiI	ACCWGGT	1 cut(s)	285
CviAII	CATG	2 cut(s)	145, 163
CviJI	RGCY	4 cut(s)	122, 167, 175, 265
CviKI_1	RGCY	4 cut(s)	122, 167, 175, 265
DdeI	CTNAG	3 cut(s)	118, 303, 335
DpnI	GATC	2 cut(s)	81, 142
DpnII	GATC	2 cut(s)	79, 140
EaeI	YGGCCR	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	2 cut(s)	144, 162
Eco24I	GRGCYC	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	285
EcoT14I	CCWWGG	2 cut(s)	144, 162
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	144, 162
FaeI	CATG	2 cut(s)	148, 166
FaiI	YATR	5 cut(s)	126, 146, 164, 196, 294
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	2 cut(s)	144, 162
FblI	GTMKAC	2 cut(s)	201, 309
FokI	GGATG	3 cut(s)	17, 91, 164
FriOI	GRGCYC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	148, 166
HinfI	GANTC	1 cut(s)	354
Hpy166II	GTNNAC	2 cut(s)	202, 310
Hpy188I	TCNGA	1 cut(s)	55
Hpy8I	GTNNAC	2 cut(s)	202, 310
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4IV	ACGT	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	3 cut(s)	118, 303, 335
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	148, 166
Kzo9I	GATC	2 cut(s)	79, 140
LpnPI	CCDG	3 cut(s)	272, 299, 343
LweI	GCATC	1 cut(s)	113
MabI	ACCWGGT	1 cut(s)	285
MaeII	ACGT	1 cut(s)	198
MalI	GATC	2 cut(s)	81, 142
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	2 cut(s)	79, 140
MboII	GAAGA	1 cut(s)	19
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	1 cut(s)	267
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	2 cut(s)	57, 87
MluNI	TGGCCA	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	363
MnlI	CCTC	4 cut(s)	118, 139, 254, 323
Mox20I	TGGCCA	1 cut(s)	167
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	345
NcoI	CCATGG	2 cut(s)	144, 162
NdeII	GATC	2 cut(s)	79, 140
NlaIII	CATG	2 cut(s)	148, 166
NlaIV	GGNNCC	2 cut(s)	142, 328
PctI	GAATGC	1 cut(s)	339
PleI	GAGTC	1 cut(s)	362
PpsI	GAGTC	1 cut(s)	362
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	285
PspN4I	GGNNCC	2 cut(s)	142, 328
PspPI	GGNCC	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	140
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	2 cut(s)	79, 140
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	8 cut(s)	131, 177, 201, 246, 267, 291, 309, 315
SexAI	ACCWGGT	1 cut(s)	285
SfaNI	GCATC	1 cut(s)	113
SinI	GGWCC	1 cut(s)	154
Sse9I	AATT	2 cut(s)	57, 87
SsiI	CCGC	2 cut(s)	190, 300
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	285
StyI	CCWWGG	2 cut(s)	144, 162
TaaI	ACNGT	1 cut(s)	100
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	357
TasI	AATT	2 cut(s)	57, 87
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TspDTI	ATGAA	2 cut(s)	19, 241
TspGWI	ACGGA	3 cut(s)	121, 146, 285
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	87
XmiI	GTMKAC	2 cut(s)	201, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.