Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003681

Physical Location & Seq

Genomic Coordinates Reverse (-)

21465799 .. 21468904

Gene Structure 3106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1254000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAGTAGATACTTTTACATTGGTGTCTTCATGCATCTCTCAACAAACCAATCTGAAATTACCAAAATGTTTTCCTTTGATCTAAAAATTCTACTCACGGTAGCATCCTCCTTGTTCACAGCCTATACCTCTGTTAAAGGATCCATGGTGTTGGTCCGTCCCATGGCCAAAAAGCTCATCCCCGCTGTCCGCTCATACGTCTACTCAAAACTCAAATCCCTTTTCACTCCACTCTCCTTTAACCTCACTTTCATCATTGACGAGCTCTACGGAGTGGCACGCAACCAGGTCTATGATGCCGCTAAGGAGAAGGTTGTGAAGCTTTATTCTCGTCATTTATGTTCGTATGATGACGGCAACAACAGTACTTGGGGATTGATAAACCTAGAGCATCCTGCTACTTTTGAGACGATGGCGATGGACCCTGAGCTCAAGAAAATGATTGCAGAGGATTTGGACAGGTTTGTGAGGAGTAGGGAGTTTTATAAGAAGGTGGGGAAGGCTTGGAAAAAGGCTACTTGTTTTGGTGTCACTCTCGGGCTTTTGAACTTCATAGACGGTTTGTGGTCAAGCTTTGGCGACGAGAGAATTATTGTATTCACCACCAACAAGAAGGATCGACTTGACCCTGCATTGCTGCGTCCTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

217

Amino Acids

24.72

Weight (kDa)

9.46

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12131 FvH4_1g12133 FvH4_1g12134
malus_domestica	MD15G1253100.v1.1 MD15G1253200.v1.1 MD15G1253400.v1.1 MD15G1254000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0099811 RchiOBHm_Chr2g0099831 RchiOBHm_Chr2g0099841
rosa_laevigata	RLG00000016916 RLG00000016917 RLG00000016918
rosa_multiflora	Rmu_co8276881.1_g000001 Rmu_sc0004158.1_g000001 Rmu_sc0004158.1_g000002 Rmu_sc0004158.1_g000003 Rmu_sc0004158.1_g000004 Rmu_sc0008864.1_g000006 Rmu_sc0008864.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142760
rosa_rugosa	Rorug02G0083400.1 Rorug02G0083500
rosa_samantha	Rh2BG135700 Rh2BG135900 Rh2BG136000 Rh2CG137300 Rh2CG137500 Rh2CG137600 Rh2DG137700 Rh2DG137900 Rh2DG138000
rosa_wichuraiana	Rw2G010280 Rw2G010300 Rw2G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AccBSI	CCGCTC	1 cut(s)	192
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	3 cut(s)	183, 190, 300
AclWI	GGATC	3 cut(s)	135, 148, 624
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	87
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	547
AjnI	CCWGG	2 cut(s)	285, 643
AluBI	AGCT	5 cut(s)	175, 265, 322, 430, 573
AluI	AGCT	5 cut(s)	175, 265, 322, 430, 573
Alw21I	GWGCWC	2 cut(s)	267, 432
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	3 cut(s)	135, 148, 624
Ama87I	CYCGRG	1 cut(s)	536
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	637
ApoI	RAATTY	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	154, 421
AsuHPI	GGTGA	1 cut(s)	592
AvaI	CYCGRG	1 cut(s)	536
AvaII	GGWCC	2 cut(s)	154, 421
BalI	TGGCCA	1 cut(s)	167
BamHI	GGATCC	1 cut(s)	140
BanII	GRGCYC	2 cut(s)	267, 432
BbsI	GAAGAC	1 cut(s)	19
Bbv12I	GWGCWC	2 cut(s)	267, 432
BbvI	GCAGC	1 cut(s)	624
BccI	CCATC	2 cut(s)	406, 412
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	2 cut(s)	287, 645
BcoDI	GTCTC	1 cut(s)	401
BfaI	CTAG	1 cut(s)	386
BisI	GCNGC	2 cut(s)	300, 638
BlsI	GCNGC	2 cut(s)	301, 639
BmcAI	AGTACT	1 cut(s)	367
Bme1390I	CCNGG	2 cut(s)	287, 645
Bme18I	GGWCC	2 cut(s)	154, 421
BmeT110I	CYCGRG	1 cut(s)	536
BmgT120I	GGNCC	2 cut(s)	154, 421
BmiI	GGNNCC	2 cut(s)	142, 423
BmrFI	CCNGG	2 cut(s)	287, 645
BmsI	GCATC	4 cut(s)	43, 113, 286, 400
BpiI	GAAGAC	1 cut(s)	19
Bpu10I	CCTNAGC	2 cut(s)	303, 426
BpuEI	CTTGAG	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	144, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	632
BseBI	CCWGG	2 cut(s)	287, 645
BseDI	CCNNGG	2 cut(s)	144, 162
BseGI	GGATG	3 cut(s)	104, 177, 391
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	1 cut(s)	417
BseRI	GAGGAG	1 cut(s)	484
BseXI	GCAGC	1 cut(s)	624
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	2 cut(s)	267, 432
BsiHKCI	CYCGRG	1 cut(s)	536
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	401
BsmBI	CGTCTC	1 cut(s)	401
BsmFI	GGGAC	1 cut(s)	144
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	536
Bsp1286I	GDGCHC	2 cut(s)	267, 432
Bsp143I	GATC	3 cut(s)	79, 140, 616
Bsp19I	CCATGG	2 cut(s)	144, 162
BspACI	CCGC	3 cut(s)	183, 190, 300
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	142, 423
BspPI	GGATC	3 cut(s)	135, 148, 624
BsrBI	CCGCTC	1 cut(s)	192
BsrDI	GCAATG	1 cut(s)	632
BssECI	CCNNGG	2 cut(s)	144, 162
BssMI	GATC	3 cut(s)	79, 140, 616
BssT1I	CCWWGG	2 cut(s)	144, 162
Bst2UI	CCWGG	2 cut(s)	287, 645
Bst4CI	ACNGT	3 cut(s)	100, 365, 560
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	303, 426
BstDSI	CCRYGG	2 cut(s)	144, 162
BstF5I	GGATG	3 cut(s)	104, 177, 391
BstKTI	GATC	3 cut(s)	82, 143, 619
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	3 cut(s)	79, 140, 616
BstNI	CCWGG	2 cut(s)	287, 645
BstSCI	CCNGG	2 cut(s)	285, 643
BstV1I	GCAGC	1 cut(s)	624
BstV2I	GAAGAC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	140
BstXI	CCANNNNNNTGG	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	140
BsuRI	GGCC	1 cut(s)	167
BtgI	CCRYGG	2 cut(s)	144, 162
BtgZI	GCGATG	1 cut(s)	431
BtsCI	GGATG	3 cut(s)	104, 177, 391
Cac8I	GCNNGC	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	154, 421
CseI	GACGC	1 cut(s)	629
CsiI	ACCWGGT	1 cut(s)	285
Csp6I	GTAC	1 cut(s)	366
CviAII	CATG	3 cut(s)	31, 145, 163
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	2 cut(s)	303, 426
DpnI	GATC	3 cut(s)	81, 142, 618
DpnII	GATC	3 cut(s)	79, 140, 616
EaeI	YGGCCR	1 cut(s)	165
Ecl136II	GAGCTC	2 cut(s)	265, 430
Eco130I	CCWWGG	2 cut(s)	144, 162
Eco24I	GRGCYC	2 cut(s)	267, 432
Eco47I	GGWCC	2 cut(s)	154, 421
Eco53kI	GAGCTC	2 cut(s)	265, 430
Eco88I	CYCGRG	1 cut(s)	536
EcoICRI	GAGCTC	2 cut(s)	265, 430
EcoRII	CCWGG	2 cut(s)	285, 643
EcoT14I	CCWWGG	2 cut(s)	144, 162
EcoT22I	ATGCAT	1 cut(s)	36
EcoT38I	GRGCYC	2 cut(s)	267, 432
ErhI	CCWWGG	2 cut(s)	144, 162
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	3 cut(s)	34, 148, 166
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	30, 144, 162
FauI	CCCGC	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	2 cut(s)	300, 638
FokI	GGATG	3 cut(s)	91, 164, 378
FriOI	GRGCYC	2 cut(s)	267, 432
Fsp4HI	GCNGC	2 cut(s)	300, 638
FspBI	CTAG	1 cut(s)	386
GluI	GCNGC	2 cut(s)	300, 638
HaeIII	GGCC	1 cut(s)	167
HgaI	GACGC	1 cut(s)	629
Hin1II	CATG	3 cut(s)	34, 148, 166
HindIII	AAGCTT	2 cut(s)	320, 571
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	2 cut(s)	117, 202
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	2 cut(s)	117, 202
Hpy99I	CGWCG	1 cut(s)	584
HpyAV	CCTTC	4 cut(s)	304, 484, 493, 607
HpyCH4III	ACNGT	3 cut(s)	100, 365, 560
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	3 cut(s)	34, 446, 632
HpyF3I	CTNAG	2 cut(s)	303, 426
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	3 cut(s)	34, 148, 166
Kzo9I	GATC	3 cut(s)	79, 140, 616
LpnPI	CCDG	7 cut(s)	272, 299, 408, 438, 445, 630, 642
Lsp1109I	GCAGC	1 cut(s)	624
LweI	GCATC	4 cut(s)	43, 113, 286, 400
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	1 cut(s)	386
MaeII	ACGT	1 cut(s)	198
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	3 cut(s)	81, 142, 618
MbiI	CCGCTC	1 cut(s)	192
MboI	GATC	3 cut(s)	79, 140, 616
MboII	GAAGA	1 cut(s)	19
MflI	RGATCY	1 cut(s)	140
MhlI	GDGCHC	2 cut(s)	267, 432
MlsI	TGGCCA	1 cut(s)	167
MluCI	AATT	3 cut(s)	57, 87, 588
MluNI	TGGCCA	1 cut(s)	167
MnlI	CCTC	5 cut(s)	118, 139, 254, 442, 462
Mox20I	TGGCCA	1 cut(s)	167
Mph1103I	ATGCAT	1 cut(s)	36
MscI	TGGCCA	1 cut(s)	167
MseI	TTAA	2 cut(s)	135, 240
Msp20I	TGGCCA	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	287, 645
MvaI	CCWGG	2 cut(s)	287, 645
NcoI	CCATGG	2 cut(s)	144, 162
NdeII	GATC	3 cut(s)	79, 140, 616
NlaIII	CATG	3 cut(s)	34, 148, 166
NlaIV	GGNNCC	2 cut(s)	142, 423
NmuCI	GTSAC	1 cut(s)	529
NsiI	ATGCAT	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	301, 639
PsiI	TTATAA	1 cut(s)	486
Psp124BI	GAGCTC	2 cut(s)	267, 432
Psp6I	CCWGG	2 cut(s)	285, 643
PspGI	CCWGG	2 cut(s)	285, 643
PspN4I	GGNNCC	2 cut(s)	142, 423
PspPI	GGNCC	2 cut(s)	154, 421
PsuI	RGATCY	1 cut(s)	140
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SacI	GAGCTC	2 cut(s)	267, 432
SaqAI	TTAA	2 cut(s)	135, 240
SatI	GCNGC	2 cut(s)	300, 638
Sau3AI	GATC	3 cut(s)	79, 140, 616
Sau96I	GGNCC	2 cut(s)	154, 421
ScaI	AGTACT	1 cut(s)	367
ScrFI	CCNGG	2 cut(s)	287, 645
SduI	GDGCHC	2 cut(s)	267, 432
SexAI	ACCWGGT	1 cut(s)	285
SfaNI	GCATC	4 cut(s)	43, 113, 286, 400
SinI	GGWCC	2 cut(s)	154, 421
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	3 cut(s)	57, 87, 588
SsiI	CCGC	3 cut(s)	183, 190, 300
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	2 cut(s)	267, 432
StyD4I	CCNGG	2 cut(s)	285, 643
StyI	CCWWGG	2 cut(s)	144, 162
TaaI	ACNGT	3 cut(s)	100, 365, 560
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	619
TasI	AATT	3 cut(s)	57, 87, 588
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	135, 240
Tru9I	TTAA	2 cut(s)	135, 240
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	1 cut(s)	637
Tsp45I	GTSAC	1 cut(s)	529
TspDTI	ATGAA	3 cut(s)	19, 241, 541
TspGWI	ACGGA	2 cut(s)	146, 285
VpaK11BI	GGWCC	2 cut(s)	154, 421
XapI	RAATTY	1 cut(s)	87
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	1 cut(s)	386
ZrmI	AGTACT	1 cut(s)	367
Zsp2I	ATGCAT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.