Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003681

Physical Location & Seq

Genomic Coordinates Reverse (-)

12139939 .. 12140415

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG137500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATCTTCCCTGAAGAAAAAGACCGTCACAGTCACTACAGTAGGCTCAATAAGAGCCGCTTTGAGCTAACATTCCACAAGAAACACAAAGACAAAGTTATAAACTCGTACATCCCCTATGTATTGGCTCGGGCCGAGGCTATCAAAGATGCAGAAAAGACTCTAAAGCTTTATAGTTACAATAGTAAACGTTCCTCGGCCCATTACTTTAAACCTTCTGGTGGACGCTCTCAAGGTAGTGATGACGATGATGACTTTGCACCTTCTTCAGGCAATTGGAGTTGCGCGGATAATGAGCACCCAGCTACTTTCGAGACAATAGCAATGGAGCCGGAGCTGAAGAGAATTATCATAGATGATTTGGACAAGTTCGTGAAGAGGAGGGAGTTCTACAAGAGAGTTGGCAAGGCTTGGAAGAGAGGCTACTTGTTGTTTGGTCCACCCGGCACTGGAAAATCCAGCTTGGTAGCGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

158

Amino Acids

18.17

Weight (kDa)

9.4

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12131 FvH4_1g12133 FvH4_1g12134
malus_domestica	MD15G1253100.v1.1 MD15G1253200.v1.1 MD15G1253400.v1.1 MD15G1254000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0099811 RchiOBHm_Chr2g0099831 RchiOBHm_Chr2g0099841
rosa_laevigata	RLG00000016916 RLG00000016917 RLG00000016918
rosa_multiflora	Rmu_co8276881.1_g000001 Rmu_sc0004158.1_g000001 Rmu_sc0004158.1_g000002 Rmu_sc0004158.1_g000003 Rmu_sc0004158.1_g000004 Rmu_sc0008864.1_g000006 Rmu_sc0008864.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142760
rosa_rugosa	Rorug02G0083400.1 Rorug02G0083500
rosa_samantha	Rh2BG135700 Rh2BG135900 Rh2BG136000 Rh2CG137300 Rh2CG137500 Rh2CG137600 Rh2DG137700 Rh2DG137900 Rh2DG138000
rosa_wichuraiana	Rw2G010280 Rw2G010300 Rw2G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	101
AccII	CGCG	1 cut(s)	287
AciI	CCGC	3 cut(s)	58, 287, 470
AclI	AACGTT	1 cut(s)	190
AcuI	CTGAAG	3 cut(s)	33, 252, 359
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	3 cut(s)	221, 269, 449
AluBI	AGCT	5 cut(s)	67, 169, 305, 337, 462
AluI	AGCT	5 cut(s)	67, 169, 305, 337, 462
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	129
AoxI	GGCC	2 cut(s)	132, 198
AspLEI	GCGC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	132, 199, 437
AsuC2I	CCSGG	1 cut(s)	444
AvaI	CYCGRG	1 cut(s)	129
AvaII	GGWCC	1 cut(s)	437
BarI	GAAGNNNNNNTAC	2 cut(s)	407, 439
Bbv12I	GWGCWC	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	444
BcoDI	GTCTC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	475
BfmI	CTRYAG	1 cut(s)	37
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	444
Bme18I	GGWCC	1 cut(s)	437
BmeT110I	CYCGRG	1 cut(s)	129
BmgT120I	GGNCC	3 cut(s)	132, 199, 437
BmiI	GGNNCC	1 cut(s)	330
BmrFI	CCNGG	1 cut(s)	444
BmsI	GCATC	1 cut(s)	139
BpuEI	CTTGAG	1 cut(s)	216
BpuMI	CCSGG	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	135, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	221, 269, 449
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	135, 195
BseGI	GGATG	1 cut(s)	111
BseLI	CCNNNNNNNGG	3 cut(s)	221, 269, 449
BseMI	GCAATG	1 cut(s)	330
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	394
BseYI	CCCAGC	1 cut(s)	301
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	2 cut(s)	134, 200
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	129
BsiSI	CCGG	2 cut(s)	332, 444
BslI	CCNNNNNNNGG	3 cut(s)	221, 269, 449
BsmAI	GTCTC	1 cut(s)	308
BsnI	GGCC	2 cut(s)	134, 200
BsoBI	CYCGRG	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	3 cut(s)	58, 287, 470
BspANI	GGCC	2 cut(s)	134, 200
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	135, 195
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	3 cut(s)	26, 32, 41
Bst6I	CTCTTC	3 cut(s)	335, 371, 410
BstC8I	GCNNGC	1 cut(s)	472
BstENI	CCTNNNNNAGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	287
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	308
BstMBI	GATC	1 cut(s)	3
BstSCI	CCNGG	1 cut(s)	442
BstSFI	CTRYAG	1 cut(s)	37
BstUI	CGCG	1 cut(s)	287
BsuRI	GGCC	2 cut(s)	134, 200
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	1 cut(s)	472
CfoI	GCGC	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	132, 199, 437
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	109
CviQI	GTAC	1 cut(s)	109
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraI	TTTAAA	1 cut(s)	211
Eam1104I	CTCTTC	3 cut(s)	335, 371, 410
EarI	CTCTTC	3 cut(s)	335, 371, 410
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	3 cut(s)	33, 252, 359
Eco88I	CYCGRG	1 cut(s)	129
EcoNI	CCTNNNNNAGG	1 cut(s)	267
FaiI	YATR	4 cut(s)	101, 120, 174, 353
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FauI	CCCGC	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	1 cut(s)	475
GlaI	GCGC	1 cut(s)	286
GluI	GCNGC	1 cut(s)	58
GsaI	CCCAGC	1 cut(s)	305
HaeIII	GGCC	2 cut(s)	134, 200
HapII	CCGG	2 cut(s)	332, 444
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	287
Hin6I	GCGC	1 cut(s)	285
HinP1I	GCGC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	2 cut(s)	332, 444
Hpy166II	GTNNAC	3 cut(s)	188, 224, 440
Hpy188III	TCNNGA	2 cut(s)	313, 373
Hpy8I	GTNNAC	3 cut(s)	188, 224, 440
HpyAV	CCTTC	2 cut(s)	225, 273
HpyCH4III	ACNGT	3 cut(s)	26, 32, 41
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	2 cut(s)	152, 260
HpySE526I	ACGT	1 cut(s)	190
HspAI	GCGC	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	328, 334
LpnPI	CCDG	8 cut(s)	24, 204, 255, 315, 345, 435, 457, 472
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	475
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	3 cut(s)	26, 32, 176
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	5 cut(s)	26, 258, 352, 388, 427
MfeI	CAATTG	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	300
MluCI	AATT	2 cut(s)	274, 345
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	5 cut(s)	130, 205, 372, 375, 413
MseI	TTAA	1 cut(s)	210
MspI	CCGG	2 cut(s)	332, 444
MspR9I	CCNGG	1 cut(s)	444
MunI	CAATTG	1 cut(s)	274
MvnI	CGCG	1 cut(s)	287
NciI	CCSGG	1 cut(s)	444
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	1 cut(s)	330
NmeAIII	GCCGAG	2 cut(s)	160, 176
NmuCI	GTSAC	2 cut(s)	26, 32
PkrI	GCNGC	1 cut(s)	59
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PsiI	TTATAA	1 cut(s)	101
Psp1406I	AACGTT	1 cut(s)	190
PspFI	CCCAGC	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	330
PspPI	GGNCC	3 cut(s)	132, 199, 437
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	3 cut(s)	132, 199, 437
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	9 cut(s)	69, 171, 193, 217, 238, 265, 307, 339, 464
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	2 cut(s)	274, 345
SsiI	CCGC	3 cut(s)	58, 287, 470
SspMI	CTAG	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	442
TaaI	ACNGT	3 cut(s)	26, 32, 41
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	312
TasI	AATT	2 cut(s)	274, 345
TauI	GCSGC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	454
TseFI	GTSAC	2 cut(s)	26, 32
Tsp45I	GTSAC	2 cut(s)	26, 32
TspRI	CASTG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	437
XagI	CCTNNNNNAGG	1 cut(s)	267
XspI	CTAG	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.