Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003681

Physical Location & Seq

Genomic Coordinates Reverse (-)

12129605 .. 12130870

Gene Structure 1266 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG137300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGAGGAGCAATATTATGATGACCACAGCAATTCCAATTTCAAAGATATAATGCCCACAGCTATATCCTCCTTTTTCTCGGCCTATGCCCCCTTTGCTGGTTACATGTTTATGCTCCAATCCATGAACACCAATTTCCTCCCTTACGAGTTTAACTCATACGTATACTCGTACTTAAAATCAAGCCTCAGCTACCTCTTGGACCCTCAAGCCAATCACATAACGCTCCTCATCGACAACTCTAGCGATGAAGACTACTCGGACGAAATCTATGATTCTGCTGAGGTCTATCTTGCGACCAAGATCAACCCGAAAACCCAAATCTTTCGAATTAGCAAAGCACCAAAACAAAAGGTCCCCATCCTTGGTGTTACCACCAACCAAGAAATCACTGACACTTTCGAAGACATTAACGTGAAGTGGCGGATGATCTTCCCTAAAGAAAACGATGGTTACTACAGTAGCGTCTATAAGAGCCGCATGGAGCTAACATTCCACAGGAAACACAAAGACAAAGTTATAAACTCGTACATCCCCTATGTGTTGGCTCGGGCCAAGGCTATCAAAGATGCAGAAAAGACTCTGAAGCTTTATAGTTACAATAGTAAACGTTCCTCGGTCTTCAAAATTTCTCGTGGACGCTCTCATGGTTCTGATGACGATGATGACTTTGCACCTTCTTCGGGCAAATGGAGTTGCATCGATCTTGAGCACCCGGCTACTTTTGAGACAATGGCAATGGAGCCGGAGCTGAAGAGGATGATCATAGAGGATTTGGACAAGTTTGTGAAGAGGAGGGAGTTCTACAAGAGAGTTGGTAAGGCTTGGAAGAGAGGTTACTTGTTGTATGGTCCACCCGGTACTGGAAAGTCTAGCTTGGTTGCGGCCATGGCTAATCATCTCCATTTTAATATCTATGACTTGGAACTTACTAGTATTTCCAGCAATGATAAGTTGAGGAAGGCCTTGATGTCTACTACAAATCGTTCTATTGTGGTGTTTGAGGATATTGATTGCAGCAAGGGATCCATAAACCGGGAATCAGCAGAGAAGAAGTTTATGGTTTCCGAAGCCAAGGCATTAAGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

363

Amino Acids

41.89

Weight (kDa)

8.19

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	48 - 143	5.7e-15	Domain associated at C-terminal with AAA
AAA	PF00004	280 - 346	1.9e-10	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12131 FvH4_1g12133 FvH4_1g12134
malus_domestica	MD15G1253100.v1.1 MD15G1253200.v1.1 MD15G1253400.v1.1 MD15G1254000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0099811 RchiOBHm_Chr2g0099831 RchiOBHm_Chr2g0099841
rosa_laevigata	RLG00000016916 RLG00000016917 RLG00000016918
rosa_multiflora	Rmu_co8276881.1_g000001 Rmu_sc0004158.1_g000001 Rmu_sc0004158.1_g000002 Rmu_sc0004158.1_g000003 Rmu_sc0004158.1_g000004 Rmu_sc0008864.1_g000006 Rmu_sc0008864.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142760
rosa_rugosa	Rorug02G0083400.1 Rorug02G0083500
rosa_samantha	Rh2BG135700 Rh2BG135900 Rh2BG136000 Rh2CG137300 Rh2CG137500 Rh2CG137600 Rh2DG137700 Rh2DG137900 Rh2DG138000
rosa_wichuraiana	Rw2G010280 Rw2G010300 Rw2G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AccI	GTMKAC	2 cut(s)	165, 974
AciI	CCGC	3 cut(s)	424, 478, 884
AclI	AACGTT	1 cut(s)	610
AclWI	GGATC	2 cut(s)	1020, 1033
AcoI	YGGCCR	1 cut(s)	885
AcsI	RAATTY	1 cut(s)	627
AcuI	CTGAAG	2 cut(s)	605, 773
AfaI	GTAC	3 cut(s)	173, 530, 862
AfiI	CCNNNNNNNGG	5 cut(s)	98, 365, 683, 863, 1035
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	2 cut(s)	43, 625
AhlI	ACTAGT	1 cut(s)	932
AluBI	AGCT	6 cut(s)	62, 192, 487, 589, 751, 876
AluI	AGCT	6 cut(s)	62, 192, 487, 589, 751, 876
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	1 cut(s)	722
AlwI	GGATC	2 cut(s)	1020, 1033
Ama87I	CYCGRG	1 cut(s)	549
AoxI	GGCC	4 cut(s)	81, 552, 885, 963
ApeKI	GCWGC	1 cut(s)	1017
ApoI	RAATTY	1 cut(s)	627
AspS9I	GGNCC	4 cut(s)	202, 355, 552, 851
AsuC2I	CCSGG	3 cut(s)	716, 858, 1037
AsuII	TTCGAA	2 cut(s)	328, 402
AvaI	CYCGRG	1 cut(s)	549
AvaII	GGWCC	3 cut(s)	202, 355, 851
BamHI	GGATCC	1 cut(s)	1025
BarI	GAAGNNNNNNTAC	2 cut(s)	821, 853
BauI	CACGAG	1 cut(s)	633
BbsI	GAAGAC	3 cut(s)	258, 411, 613
Bbv12I	GWGCWC	1 cut(s)	714
BbvCI	CCTCAGC	2 cut(s)	188, 282
BbvI	GCAGC	1 cut(s)	1029
BccI	CCATC	2 cut(s)	368, 443
BcgI	CGANNNNNNTGC	2 cut(s)	663, 697
BclI	TGATCA	1 cut(s)	762
BcnI	CCSGG	3 cut(s)	716, 858, 1037
BcoDI	GTCTC	1 cut(s)	722
BcuI	ACTAGT	1 cut(s)	932
BfaI	CTAG	3 cut(s)	243, 873, 933
BfmI	CTRYAG	1 cut(s)	457
BisI	GCNGC	3 cut(s)	478, 885, 1018
BlsI	GCNGC	3 cut(s)	479, 886, 1019
Bme1390I	CCNGG	3 cut(s)	716, 858, 1037
Bme18I	GGWCC	3 cut(s)	202, 355, 851
BmeT110I	CYCGRG	1 cut(s)	549
BmgT120I	GGNCC	4 cut(s)	202, 355, 552, 851
BmiI	GGNNCC	4 cut(s)	204, 357, 744, 1027
BmrFI	CCNGG	3 cut(s)	716, 858, 1037
BmsI	GCATC	2 cut(s)	559, 708
BpiI	GAAGAC	3 cut(s)	258, 411, 613
BplI	GAGNNNNNCTC	2 cut(s)	140, 172
Bpu10I	CCTNAGC	2 cut(s)	188, 282
Bpu14I	TTCGAA	2 cut(s)	328, 402
BpuEI	CTTGAG	2 cut(s)	192, 728
BpuMI	CCSGG	3 cut(s)	716, 858, 1037
Bsa29I	ATCGAT	1 cut(s)	702
BsaAI	YACGTR	1 cut(s)	163
BsaJI	CCNNGG	5 cut(s)	364, 555, 615, 888, 1074
Bsc4I	CCNNNNNNNGG	5 cut(s)	98, 365, 683, 863, 1035
Bse1I	ACTGG	1 cut(s)	868
Bse3DI	GCAATG	2 cut(s)	744, 952
BseCI	ATCGAT	1 cut(s)	702
BseDI	CCNNGG	5 cut(s)	364, 555, 615, 888, 1074
BseGI	GGATG	4 cut(s)	360, 432, 531, 765
BseLI	CCNNNNNNNGG	5 cut(s)	98, 365, 683, 863, 1035
BseMI	GCAATG	2 cut(s)	744, 952
BseMII	CTCAG	2 cut(s)	202, 273
BseNI	ACTGG	1 cut(s)	868
BseRI	GAGGAG	3 cut(s)	20, 218, 808
BseXI	GCAGC	1 cut(s)	1029
BshFI	GGCC	4 cut(s)	83, 554, 887, 965
BshVI	ATCGAT	1 cut(s)	702
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	549
BsiSI	CCGG	4 cut(s)	716, 746, 858, 1036
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	5 cut(s)	98, 365, 683, 863, 1035
BsmAI	GTCTC	1 cut(s)	722
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	4 cut(s)	83, 554, 887, 965
BsoBI	CYCGRG	1 cut(s)	549
Bsp119I	TTCGAA	2 cut(s)	328, 402
Bsp1286I	GDGCHC	1 cut(s)	714
Bsp143I	GATC	5 cut(s)	303, 429, 703, 762, 1025
Bsp19I	CCATGG	1 cut(s)	888
BspACI	CCGC	3 cut(s)	424, 478, 884
BspANI	GGCC	4 cut(s)	83, 554, 887, 965
BspCNI	CTCAG	2 cut(s)	201, 274
BspDI	ATCGAT	1 cut(s)	702
BspLI	GGNNCC	4 cut(s)	204, 357, 744, 1027
BspPI	GGATC	2 cut(s)	1020, 1033
BspT104I	TTCGAA	2 cut(s)	328, 402
BsrDI	GCAATG	2 cut(s)	744, 952
BsrI	ACTGG	1 cut(s)	868
BssECI	CCNNGG	5 cut(s)	364, 555, 615, 888, 1074
BssMI	GATC	5 cut(s)	303, 429, 703, 762, 1025
BssNAI	GTATAC	1 cut(s)	166
BssSI	CACGAG	1 cut(s)	633
BssT1I	CCWWGG	4 cut(s)	364, 555, 888, 1074
Bst1107I	GTATAC	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	633
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	3 cut(s)	749, 785, 824
BstBAI	YACGTR	1 cut(s)	163
BstBI	TTCGAA	2 cut(s)	328, 402
BstDEI	CTNAG	2 cut(s)	188, 282
BstDSI	CCRYGG	1 cut(s)	888
BstF5I	GGATG	4 cut(s)	360, 432, 531, 765
BstKTI	GATC	5 cut(s)	306, 432, 706, 765, 1028
BstMAI	GTCTC	1 cut(s)	722
BstMBI	GATC	5 cut(s)	303, 429, 703, 762, 1025
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 890
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	3 cut(s)	714, 856, 1035
BstSFI	CTRYAG	1 cut(s)	457
BstSNI	TACGTA	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	1029
BstV2I	GAAGAC	3 cut(s)	258, 411, 613
BstX2I	RGATCY	1 cut(s)	1025
BstYI	RGATCY	1 cut(s)	1025
BstZ17I	GTATAC	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	702
BsuRI	GGCC	4 cut(s)	83, 554, 887, 965
BsuTUI	ATCGAT	1 cut(s)	702
BtgI	CCRYGG	1 cut(s)	888
BtgZI	GCGATG	1 cut(s)	261
BtsCI	GGATG	4 cut(s)	360, 432, 531, 765
BtsIMutI	CAGTG	1 cut(s)	390
Cfr13I	GGNCC	4 cut(s)	202, 355, 552, 851
ClaI	ATCGAT	1 cut(s)	702
CseI	GACGC	2 cut(s)	454, 648
Csp6I	GTAC	3 cut(s)	172, 529, 861
CviAII	CATG	5 cut(s)	106, 124, 481, 647, 889
CviQI	GTAC	3 cut(s)	172, 529, 861
DdeI	CTNAG	2 cut(s)	188, 282
DpnI	GATC	5 cut(s)	305, 431, 705, 764, 1027
DpnII	GATC	5 cut(s)	303, 429, 703, 762, 1025
EaeI	YGGCCR	1 cut(s)	885
Eam1104I	CTCTTC	3 cut(s)	749, 785, 824
EarI	CTCTTC	3 cut(s)	749, 785, 824
EciI	GGCGGA	1 cut(s)	439
Eco105I	TACGTA	1 cut(s)	163
Eco130I	CCWWGG	4 cut(s)	364, 555, 888, 1074
Eco147I	AGGCCT	1 cut(s)	965
Eco47I	GGWCC	3 cut(s)	202, 355, 851
Eco57I	CTGAAG	2 cut(s)	605, 773
Eco88I	CYCGRG	1 cut(s)	549
EcoO109I	RGGNCCY	1 cut(s)	355
EcoT14I	CCWWGG	4 cut(s)	364, 555, 888, 1074
ErhI	CCWWGG	4 cut(s)	364, 555, 888, 1074
FaeI	CATG	5 cut(s)	109, 127, 484, 650, 892
FalI	AAGNNNNNCTT	2 cut(s)	860, 892
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	5 cut(s)	105, 123, 480, 646, 888
FbaI	TGATCA	1 cut(s)	762
FblI	GTMKAC	2 cut(s)	165, 974
Fnu4HI	GCNGC	3 cut(s)	478, 885, 1018
FokI	GGATG	4 cut(s)	347, 439, 518, 772
Fsp4HI	GCNGC	3 cut(s)	478, 885, 1018
FspBI	CTAG	3 cut(s)	243, 873, 933
GluI	GCNGC	3 cut(s)	478, 885, 1018
HaeIII	GGCC	4 cut(s)	83, 554, 887, 965
HapII	CCGG	4 cut(s)	716, 746, 858, 1036
HgaI	GACGC	2 cut(s)	454, 648
Hin1II	CATG	5 cut(s)	109, 127, 484, 650, 892
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	3 cut(s)	275, 580, 1040
HpaII	CCGG	4 cut(s)	716, 746, 858, 1036
Hpy166II	GTNNAC	5 cut(s)	166, 608, 638, 854, 975
Hpy188I	TCNGA	4 cut(s)	262, 585, 655, 1069
Hpy188III	TCNNGA	1 cut(s)	707
Hpy8I	GTNNAC	5 cut(s)	166, 608, 638, 854, 975
HpyAV	CCTTC	2 cut(s)	687, 955
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	3 cut(s)	162, 414, 610
HpyCH4V	TGCA	4 cut(s)	572, 674, 699, 1017
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 890
HpyF3I	CTNAG	2 cut(s)	188, 282
HpySE526I	ACGT	3 cut(s)	162, 414, 610
Hsp92II	CATG	5 cut(s)	109, 127, 484, 650, 892
Ksp22I	TGATCA	1 cut(s)	762
Kzo9I	GATC	5 cut(s)	303, 429, 703, 762, 1025
LmnI	GCTCC	6 cut(s)	7, 120, 231, 484, 742, 748
LpnPI	CCDG	8 cut(s)	84, 484, 729, 759, 849, 871, 955, 1049
Lsp1109I	GCAGC	1 cut(s)	1029
LweI	GCATC	2 cut(s)	559, 708
MaeI	CTAG	3 cut(s)	243, 873, 933
MaeII	ACGT	3 cut(s)	162, 414, 610
MaeIII	GTNAC	5 cut(s)	101, 370, 452, 596, 836
MalI	GATC	5 cut(s)	305, 431, 705, 764, 1027
MboI	GATC	5 cut(s)	303, 429, 703, 762, 1025
MboII	GAAGA	9 cut(s)	263, 416, 424, 613, 672, 766, 802, 841, 1063
MflI	RGATCY	1 cut(s)	1025
MhlI	GDGCHC	1 cut(s)	714
MluCI	AATT	5 cut(s)	31, 37, 133, 330, 627
MlyI	GAGTC	1 cut(s)	574
MseI	TTAA	5 cut(s)	153, 176, 411, 909, 1082
MslI	CAYNNNNRTG	2 cut(s)	110, 413
MspI	CCGG	4 cut(s)	716, 746, 858, 1036
MspR9I	CCNGG	3 cut(s)	716, 858, 1037
MwoI	GCNNNNNNNGC	2 cut(s)	95, 890
NciI	CCSGG	3 cut(s)	716, 858, 1037
NcoI	CCATGG	1 cut(s)	888
NdeII	GATC	5 cut(s)	303, 429, 703, 762, 1025
NlaIII	CATG	5 cut(s)	109, 127, 484, 650, 892
NlaIV	GGNNCC	4 cut(s)	204, 357, 744, 1027
NmeAIII	GCCGAG	1 cut(s)	59
NspI	RCATGY	1 cut(s)	109
NspV	TTCGAA	2 cut(s)	328, 402
PceI	AGGCCT	1 cut(s)	965
PciI	ACATGT	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	275, 1040
PkrI	GCNGC	3 cut(s)	479, 886, 1019
PleI	GAGTC	1 cut(s)	574
PpsI	GAGTC	1 cut(s)	574
Ppu21I	YACGTR	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	355
PscI	ACATGT	1 cut(s)	105
PsiI	TTATAA	1 cut(s)	521
Psp1406I	AACGTT	1 cut(s)	610
Psp5II	RGGWCCY	1 cut(s)	355
PspN4I	GGNNCC	4 cut(s)	204, 357, 744, 1027
PspPI	GGNCC	4 cut(s)	202, 355, 552, 851
PspPPI	RGGWCCY	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	1025
RsaI	GTAC	3 cut(s)	173, 530, 862
RsaNI	GTAC	3 cut(s)	172, 529, 861
RseI	CAYNNNNRTG	2 cut(s)	110, 413
SaqAI	TTAA	5 cut(s)	153, 176, 411, 909, 1082
SatI	GCNGC	3 cut(s)	478, 885, 1018
Sau3AI	GATC	5 cut(s)	303, 429, 703, 762, 1025
Sau96I	GGNCC	4 cut(s)	202, 355, 552, 851
SchI	GAGTC	1 cut(s)	574
ScrFI	CCNGG	3 cut(s)	716, 858, 1037
SduI	GDGCHC	1 cut(s)	714
SfaNI	GCATC	2 cut(s)	559, 708
SfcI	CTRYAG	1 cut(s)	457
SfuI	TTCGAA	2 cut(s)	328, 402
SinI	GGWCC	3 cut(s)	202, 355, 851
SmiMI	CAYNNNNRTG	2 cut(s)	110, 413
SmlI	CTYRAG	2 cut(s)	207, 707
SmoI	CTYRAG	2 cut(s)	207, 707
SnaBI	TACGTA	1 cut(s)	163
SpeI	ACTAGT	1 cut(s)	932
Sse9I	AATT	5 cut(s)	31, 37, 133, 330, 627
SseBI	AGGCCT	1 cut(s)	965
SsiI	CCGC	3 cut(s)	424, 478, 884
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	3 cut(s)	243, 873, 933
StuI	AGGCCT	1 cut(s)	965
StyD4I	CCNGG	3 cut(s)	714, 856, 1035
StyI	CCWWGG	4 cut(s)	364, 555, 888, 1074
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	3 cut(s)	165, 417, 613
TaqI	TCGA	4 cut(s)	234, 328, 402, 702
TaqII	GACCGA	1 cut(s)	607
TasI	AATT	5 cut(s)	31, 37, 133, 330, 627
TauI	GCSGC	2 cut(s)	480, 887
TfiI	GAWTC	2 cut(s)	275, 1040
Tru1I	TTAA	5 cut(s)	153, 176, 411, 909, 1082
Tru9I	TTAA	5 cut(s)	153, 176, 411, 909, 1082
TscAI	CASTG	1 cut(s)	397
TseI	GCWGC	1 cut(s)	1017
TspDTI	ATGAA	2 cut(s)	140, 264
TspRI	CASTG	1 cut(s)	397
VpaK11BI	GGWCC	3 cut(s)	202, 355, 851
XapI	RAATTY	1 cut(s)	627
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	2 cut(s)	165, 974
XspI	CTAG	3 cut(s)	243, 873, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.