Rroxscaffold_2G00142760

Domain associated at C-terminal with AAA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003681
Physical Location & Seq
Forward (+)
80837989 .. 80850705
12717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00142760.1

Sequence Viewer

Length: 876 bp
ATGACTTCTCCAAATTTGCAAGATTTGATGCCCACAGCAATGTCTTCCTTTTTCTCGGCCTATGCCCCCTTTGCGGGTTACATGTTTATGCTCCAATCCTTGAACACCAATTTCATACCTTACCAGATCAACTACCTCCTGGACCCTCAAGCTAATCACATAACTCTCCTCATCGACAGCTCTAGGGATCACTACTCGGACGAAATTTCGCAGCGCAACCTAGTCTATGATGCTGCTGAGGTCTATCTTGCCACCAAGATCAACCCGAAAACCCAAATCTTTCGAATCATGAGCAAAGCACCGAAACAAAAGGTCCCCATCGTTGTTGTTACCACCACCCAAGAAATCGCAGACACTTTTGAAAACATTAAAGTAAAGTGGCGCATGATCTTCCCTGAAGAAAAAGACCGTCACAGTCACTACAGTAGCGACTATAAGAGCAGCATGGAGCTAACATTCCACAGGAAACACAAAGACAAAGTTATAAACTCGTACATCCCCTATGTGTTGGCTCGGGCCGAAGCTATCAAAGATGCAGAAAAGACTCTGAAGCTTTATAGTTACAATAGTAAACGTTCCTCGGTCTTCAAAATTTCTCGTGGACGCTCTCATGGTTCTGATGATGATGATTACTTTGCACCTTCTTCGGGCAAATGGAGTTGCATGGATCTTGAGCACCCGGCTACTTTTGAGACAATGGCAATGGAGCCGGAGCTGAAGAGGATGATCATAGAGGATTTGGACAAGTTTGTGAAGAGGAGGGAGTTCTACAAGAGAGTTGGTAAGGCTTGGAAGAGAGGTTACTTGGAAGAGAGGGTATTTGTTGTATGGTCCACCTGGTACAGGCAAATCGAGCTTGATTGCAGCCATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA AAA_assoc

Protein Analysis

291

Amino Acids

34.16

Weight (kDa)

8.77

Isoelectric Point (pI)

58.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 43 - 129 8.4e-12 Domain associated at C-terminal with AAA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
AciI CCGC 1 cut(s) 74
AclI AACGTT 1 cut(s) 574
AclWI GGATC 2 cut(s) 195, 675
AcsI RAATTY 3 cut(s) 13, 204, 591
AcuI CTGAAG 3 cut(s) 417, 569, 737
AfaI GTAC 2 cut(s) 494, 842
AfiI CCNNNNNNNGG 4 cut(s) 73, 74, 647, 843
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 3 cut(s) 103, 362, 589
AjnI CCWGG 2 cut(s) 138, 836
AluBI AGCT 7 cut(s) 152, 180, 451, 524, 553, 715, 856
AluI AGCT 7 cut(s) 152, 180, 451, 524, 553, 715, 856
Alw21I GWGCWC 1 cut(s) 678
Alw26I GTCTC 1 cut(s) 686
AlwI GGATC 2 cut(s) 195, 675
Ama87I CYCGRG 1 cut(s) 513
AoxI GGCC 2 cut(s) 57, 516
ApeKI GCWGC 4 cut(s) 211, 233, 441, 864
ApoI RAATTY 3 cut(s) 13, 204, 591
AspLEI GCGC 2 cut(s) 216, 384
AspS9I GGNCC 4 cut(s) 142, 313, 516, 831
AsuC2I CCSGG 1 cut(s) 680
AsuII TTCGAA 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 513
AvaII GGWCC 3 cut(s) 142, 313, 831
BarI GAAGNNNNNNTAC 2 cut(s) 785, 817
BauI CACGAG 1 cut(s) 597
BbsI GAAGAC 2 cut(s) 36, 577
Bbv12I GWGCWC 1 cut(s) 678
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 220, 223, 453
BccI CCATC 1 cut(s) 326
BcgI CGANNNNNNTGC 2 cut(s) 627, 661
BciT130I CCWGG 2 cut(s) 140, 838
BclI TGATCA 1 cut(s) 726
BcnI CCSGG 1 cut(s) 680
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 2 cut(s) 183, 221
BfmI CTRYAG 1 cut(s) 421
BisI GCNGC 4 cut(s) 212, 234, 442, 865
BlsI GCNGC 4 cut(s) 213, 235, 443, 866
Bme1390I CCNGG 3 cut(s) 140, 680, 838
Bme18I GGWCC 3 cut(s) 142, 313, 831
BmeT110I CYCGRG 1 cut(s) 513
BmgT120I GGNCC 4 cut(s) 142, 313, 516, 831
BmiI GGNNCC 3 cut(s) 144, 315, 708
BmrFI CCNGG 3 cut(s) 140, 680, 838
BmsI GCATC 3 cut(s) 18, 220, 523
BpiI GAAGAC 2 cut(s) 36, 577
Bpu10I CCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 283
BpuEI CTTGAG 2 cut(s) 132, 692
BpuMI CCSGG 1 cut(s) 680
BsaJI CCNNGG 2 cut(s) 579, 868
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 74, 647, 843
Bse3DI GCAATG 2 cut(s) 45, 708
BseBI CCWGG 2 cut(s) 140, 838
BseDI CCNNGG 2 cut(s) 579, 868
BseGI GGATG 2 cut(s) 495, 729
BseLI CCNNNNNNNGG 4 cut(s) 73, 74, 647, 843
BseMI GCAATG 2 cut(s) 45, 708
BseMII CTCAG 1 cut(s) 228
BseRI GAGGAG 2 cut(s) 158, 772
BseXI GCAGC 3 cut(s) 220, 223, 453
BshFI GGCC 2 cut(s) 59, 518
BsiHKAI GWGCWC 1 cut(s) 678
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 2 cut(s) 680, 710
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 4 cut(s) 73, 74, 647, 843
BsmAI GTCTC 1 cut(s) 686
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 2 cut(s) 59, 518
BsoBI CYCGRG 1 cut(s) 513
Bsp119I TTCGAA 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 6 cut(s) 126, 187, 258, 387, 667, 726
Bsp19I CCATGG 1 cut(s) 868
BspACI CCGC 1 cut(s) 74
BspANI GGCC 2 cut(s) 59, 518
BspCNI CTCAG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 288
BspLI GGNNCC 3 cut(s) 144, 315, 708
BspPI GGATC 2 cut(s) 195, 675
BspT104I TTCGAA 1 cut(s) 283
BsrDI GCAATG 2 cut(s) 45, 708
BssECI CCNNGG 2 cut(s) 579, 868
BssMI GATC 6 cut(s) 126, 187, 258, 387, 667, 726
BssSI CACGAG 1 cut(s) 597
BssT1I CCWWGG 1 cut(s) 868
Bst2BI CACGAG 1 cut(s) 597
Bst2UI CCWGG 2 cut(s) 140, 838
Bst4CI ACNGT 3 cut(s) 410, 416, 425
Bst6I CTCTTC 4 cut(s) 713, 749, 788, 804
BstBI TTCGAA 1 cut(s) 283
BstDEI CTNAG 1 cut(s) 237
BstDSI CCRYGG 1 cut(s) 868
BstENI CCTNNNNNAGG 1 cut(s) 841
BstF5I GGATG 2 cut(s) 495, 729
BstHHI GCGC 2 cut(s) 216, 384
BstKTI GATC 6 cut(s) 129, 190, 261, 390, 670, 729
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 6 cut(s) 126, 187, 258, 387, 667, 726
BstMWI GCNNNNNNNGC 3 cut(s) 71, 853, 870
BstNI CCWGG 2 cut(s) 140, 838
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 3 cut(s) 138, 678, 836
BstSFI CTRYAG 1 cut(s) 421
BstV1I GCAGC 3 cut(s) 220, 223, 453
BstV2I GAAGAC 2 cut(s) 36, 577
BstX2I RGATCY 1 cut(s) 667
BstYI RGATCY 1 cut(s) 667
BsuRI GGCC 2 cut(s) 59, 518
BtgI CCRYGG 1 cut(s) 868
BtsCI GGATG 2 cut(s) 495, 729
CciI TCATGA 1 cut(s) 288
CfoI GCGC 2 cut(s) 216, 384
Cfr13I GGNCC 4 cut(s) 142, 313, 516, 831
CseI GACGC 1 cut(s) 612
CsiI ACCWGGT 1 cut(s) 836
Csp6I GTAC 2 cut(s) 493, 841
CviAII CATG 7 cut(s) 82, 289, 385, 445, 611, 664, 869
CviQI GTAC 2 cut(s) 493, 841
DdeI CTNAG 1 cut(s) 237
DpnI GATC 6 cut(s) 128, 189, 260, 389, 669, 728
DpnII GATC 6 cut(s) 126, 187, 258, 387, 667, 726
Eam1104I CTCTTC 4 cut(s) 713, 749, 788, 804
EarI CTCTTC 4 cut(s) 713, 749, 788, 804
Eco130I CCWWGG 1 cut(s) 868
Eco47I GGWCC 3 cut(s) 142, 313, 831
Eco57I CTGAAG 3 cut(s) 417, 569, 737
Eco88I CYCGRG 1 cut(s) 513
EcoNI CCTNNNNNAGG 1 cut(s) 841
EcoO109I RGGNCCY 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 138, 836
EcoT14I CCWWGG 1 cut(s) 868
ErhI CCWWGG 1 cut(s) 868
FaeI CATG 7 cut(s) 85, 292, 388, 448, 614, 667, 872
FaqI GGGAC 1 cut(s) 299
FatI CATG 7 cut(s) 81, 288, 384, 444, 610, 663, 868
FauI CCCGC 1 cut(s) 67
FbaI TGATCA 1 cut(s) 726
Fnu4HI GCNGC 4 cut(s) 212, 234, 442, 865
FokI GGATG 2 cut(s) 482, 736
Fsp4HI GCNGC 4 cut(s) 212, 234, 442, 865
FspBI CTAG 2 cut(s) 183, 221
GlaI GCGC 2 cut(s) 215, 383
GluI GCNGC 4 cut(s) 212, 234, 442, 865
HaeIII GGCC 2 cut(s) 59, 518
HapII CCGG 2 cut(s) 680, 710
HgaI GACGC 1 cut(s) 612
HhaI GCGC 2 cut(s) 216, 384
Hin1II CATG 7 cut(s) 85, 292, 388, 448, 614, 667, 872
Hin6I GCGC 2 cut(s) 214, 382
HinP1I GCGC 2 cut(s) 214, 382
HindIII AAGCTT 1 cut(s) 551
HinfI GANTC 2 cut(s) 285, 544
HpaII CCGG 2 cut(s) 680, 710
Hpy166II GTNNAC 3 cut(s) 572, 602, 834
Hpy188I TCNGA 3 cut(s) 199, 549, 619
Hpy188III TCNNGA 2 cut(s) 289, 671
Hpy8I GTNNAC 3 cut(s) 572, 602, 834
HpyAV CCTTC 1 cut(s) 651
HpyCH4III ACNGT 3 cut(s) 410, 416, 425
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 5 cut(s) 19, 536, 638, 663, 864
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 853, 870
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 7 cut(s) 85, 292, 388, 448, 614, 667, 872
HspAI GCGC 2 cut(s) 214, 382
Ksp22I TGATCA 1 cut(s) 726
Kzo9I GATC 6 cut(s) 126, 187, 258, 387, 667, 726
LmnI GCTCC 4 cut(s) 96, 448, 706, 712
Lsp1109I GCAGC 3 cut(s) 220, 223, 453
LweI GCATC 3 cut(s) 18, 220, 523
MabI ACCWGGT 1 cut(s) 836
MaeI CTAG 2 cut(s) 183, 221
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 6 cut(s) 77, 328, 410, 416, 560, 800
MalI GATC 6 cut(s) 128, 189, 260, 389, 669, 728
MboI GATC 6 cut(s) 126, 187, 258, 387, 667, 726
MboII GAAGA 9 cut(s) 36, 382, 410, 577, 636, 730, 766, 805, 821
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 4 cut(s) 13, 109, 204, 591
MlyI GAGTC 1 cut(s) 538
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 2 cut(s) 38, 86
MspI CCGG 2 cut(s) 680, 710
MspR9I CCNGG 3 cut(s) 140, 680, 838
MvaI CCWGG 2 cut(s) 140, 838
MwoI GCNNNNNNNGC 3 cut(s) 71, 853, 870
NciI CCSGG 1 cut(s) 680
NcoI CCATGG 1 cut(s) 868
NdeII GATC 6 cut(s) 126, 187, 258, 387, 667, 726
NlaIII CATG 7 cut(s) 85, 292, 388, 448, 614, 667, 872
NlaIV GGNNCC 3 cut(s) 144, 315, 708
NmeAIII GCCGAG 1 cut(s) 35
NmuCI GTSAC 2 cut(s) 410, 416
NspI RCATGY 1 cut(s) 85
NspV TTCGAA 1 cut(s) 283
PagI TCATGA 1 cut(s) 288
PciI ACATGT 1 cut(s) 81
PfeI GAWTC 1 cut(s) 285
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 4 cut(s) 213, 235, 443, 866
PleI GAGTC 1 cut(s) 538
PpsI GAGTC 1 cut(s) 538
PpuMI RGGWCCY 1 cut(s) 313
PscI ACATGT 1 cut(s) 81
PsiI TTATAA 1 cut(s) 485
Psp1406I AACGTT 1 cut(s) 574
Psp5II RGGWCCY 1 cut(s) 313
Psp6I CCWGG 2 cut(s) 138, 836
PspGI CCWGG 2 cut(s) 138, 836
PspN4I GGNNCC 3 cut(s) 144, 315, 708
PspPI GGNCC 4 cut(s) 142, 313, 516, 831
PspPPI RGGWCCY 1 cut(s) 313
PsuI RGATCY 1 cut(s) 667
RsaI GTAC 2 cut(s) 494, 842
RsaNI GTAC 2 cut(s) 493, 841
RseI CAYNNNNRTG 2 cut(s) 38, 86
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 4 cut(s) 212, 234, 442, 865
Sau3AI GATC 6 cut(s) 126, 187, 258, 387, 667, 726
Sau96I GGNCC 4 cut(s) 142, 313, 516, 831
SchI GAGTC 1 cut(s) 538
ScrFI CCNGG 3 cut(s) 140, 680, 838
SduI GDGCHC 1 cut(s) 678
SexAI ACCWGGT 1 cut(s) 836
SfaNI GCATC 3 cut(s) 18, 220, 523
SfcI CTRYAG 1 cut(s) 421
SfuI TTCGAA 1 cut(s) 283
SinI GGWCC 3 cut(s) 142, 313, 831
SmiMI CAYNNNNRTG 2 cut(s) 38, 86
SmlI CTYRAG 2 cut(s) 147, 671
SmoI CTYRAG 2 cut(s) 147, 671
Sse9I AATT 4 cut(s) 13, 109, 204, 591
SsiI CCGC 1 cut(s) 74
SspMI CTAG 2 cut(s) 183, 221
StyD4I CCNGG 3 cut(s) 138, 678, 836
StyI CCWWGG 1 cut(s) 868
TaaI ACNGT 3 cut(s) 410, 416, 425
TaiI ACGT 1 cut(s) 577
TaqI TCGA 3 cut(s) 174, 283, 852
TaqII GACCGA 1 cut(s) 571
TasI AATT 4 cut(s) 13, 109, 204, 591
TfiI GAWTC 1 cut(s) 285
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TseFI GTSAC 2 cut(s) 410, 416
TseI GCWGC 4 cut(s) 211, 233, 441, 864
Tsp45I GTSAC 2 cut(s) 410, 416
TspDTI ATGAA 1 cut(s) 103
VpaK11BI GGWCC 3 cut(s) 142, 313, 831
XagI CCTNNNNNAGG 1 cut(s) 841
XapI RAATTY 3 cut(s) 13, 204, 591
XceI RCATGY 1 cut(s) 85
XspI CTAG 2 cut(s) 183, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.