RLG00000016917

Domain associated at C-terminal with AAA

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
11215518 .. 11217274
1757 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016917

Sequence Viewer

Length: 1563 bp
ATGGAGGGGCAATATTGTGATGACCACAGCAATTTCAATTTCAAAAGTATGATGCCCACAGCTATATCCTCCTTTTTCTCGGCCTATGCCCCCTTTGCTGGTTACATGTTTATGCTCAAATCCATGAACACCAATTTCCTCCCTTACGAGTTTAAATCATACATATACTCATACCTACAATCAAGCCTCAGCTACCTCCTGGACCCTCTTGCCAATCACATAACTCTCCTCATCGACAACTCTAGGGATCAGTACTCGGACGAAATTTCGCAGCGCAACCTAGTCTATGATGCTGCTGAGGTCTATCTTGCCACCAAGATCAACCCGAAAACCCAAATCTTTCGAATTAGCAAAGCACCGAAACAAAAGGTCCCCATCGTTGTTGTTACCACCACCCAAGAAATCGCCGACACTTTCGAAAACATTAAAGTAAAGTGGCGAATGATCTTCCCTGAAGAAAAAGACCGTCACAGTCACTACAGTAGGCTCAATAAGAGCCGCTTTGAGCTAACATTCCACAGGAAACACAAAGACAAAGTTATAAACTCGTACATCCCCCATGTATTGGCTCGGGCCGAGGCTATCAAAGATGCAGAAAAGACTCTAAAGCTTTATAGTTACAATAGCAAACGTTCCACGGGCCATTACTTTAAACCTACTGGTGGACGCTCTCAAGGTAGTGATGACGATGATGACTTTGCACCTTCTTCAGGCAATTGGAGTTGCGCGGATAATGAGCACCCAGCTACTTTCGAGACAATAGCAATGGAGCCGGAGCTGAAGAGAATTATCATAGAGGATTTGGACAAGTTCGTGAAGAGGAGGGAGTTCTACAAGAGAGTTGGCAAGGCTTGGAAGAGAGGCTACTTGTTGTTTGGTCCACCCGGCACTGGAAAATCAAGCTTGGTAGCGGCCATGGCTAATCATCTCCGTTTTGATATTTATGATTTGGAACTCACTAGCATTTCCAGCAACGATCAATTGAGGAAGGCCTTGATGTCTACTACGAATCGTTCTATTGTGGTGTTTGAGGATATTGATTGCAGCAAGGAATCAGTAAACCGGGAATCAGCAGAGAAGAACTTTATGGTTTCCAAAGCCGAATCCAAGTTTACACTCTCGGGTCTGCTGAATGTCGTTGATGGTCTGTGGTCAAGTTGCGGTGATGAGAGAATTATTGTGTTCACCACCAACCACAAGGAGCGGCTAGACCCTGCATTGTTGAGGCCTGGTCGAATGGATGTACACATTCACATGTCGTATTGCACCCCAAGAGGGTTCAAGACCTTAGCCTCGAACTACCTCGGCATTCAGGATACCAGCGAACATCGCCTGTGTGGAGAAATTGAAGCATTGATGGAGAACACAAACATCACCCCTGCAGAGGTTTGTGAGGAGCTTATGAGGGGTGATGGTGATGATGCTGATGCTGCTCTTGAAGGACTTGTCAATTGCCTCAAGTGTAAGAGGCTCGAGACCAAAAAGATAGAGGAAGAAGAAATAGGGAAAGCAAAGAGGCAGAAAACAGATAACAATGCGTCTGAAATTTCCGAGAATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

521

Amino Acids

59.49

Weight (kDa)

6.43

Isoelectric Point (pI)

46.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 48 - 148 4e-15 Domain associated at C-terminal with AAA
AAA PF00004 289 - 420 1.5e-18 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 422 - 498 8.8e-22 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AccB7I CCANNNNNTGG 1 cut(s) 565
AccBSI CCGCTC 1 cut(s) 1204
AccI GTMKAC 1 cut(s) 1001
AccII CGCG 1 cut(s) 728
AciI CCGC 5 cut(s) 499, 728, 911, 1161, 1204
AclI AACGTT 1 cut(s) 631
AclWI GGATC 1 cut(s) 255
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 2 cut(s) 264, 1545
AcuI CTGAAG 3 cut(s) 474, 693, 800
AfaI GTAC 3 cut(s) 254, 551, 1245
AfiI CCNNNNNNNGG 8 cut(s) 98, 565, 662, 710, 890, 1275, 1384, 1557
AflIII ACRYGT 2 cut(s) 105, 1254
AgsI TTSAA 5 cut(s) 37, 43, 1282, 1349, 1439
AjnI CCWGG 2 cut(s) 198, 1228
AluBI AGCT 8 cut(s) 62, 192, 508, 610, 746, 778, 903, 1399
AluI AGCT 8 cut(s) 62, 192, 508, 610, 746, 778, 903, 1399
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 2 cut(s) 749, 1469
AlwI GGATC 1 cut(s) 255
Ama87I CYCGRG 3 cut(s) 570, 1120, 1472
AoxI GGCC 6 cut(s) 81, 573, 640, 912, 990, 1226
ApeKI GCWGC 4 cut(s) 271, 293, 1044, 1430
ApoI RAATTY 2 cut(s) 264, 1545
AspLEI GCGC 2 cut(s) 276, 728
AspS9I GGNCC 5 cut(s) 202, 370, 573, 640, 878
AsuC2I CCSGG 2 cut(s) 885, 1064
AsuHPI GGTGA 5 cut(s) 1175, 1177, 1366, 1421, 1427
AsuII TTCGAA 2 cut(s) 343, 417
AvaI CYCGRG 3 cut(s) 570, 1120, 1472
AvaII GGWCC 3 cut(s) 202, 370, 878
BarI GAAGNNNNNNTAC 2 cut(s) 848, 880
Bbv12I GWGCWC 1 cut(s) 741
BbvCI CCTCAGC 2 cut(s) 188, 297
BbvI GCAGC 4 cut(s) 280, 283, 1056, 1417
BccI CCATC 4 cut(s) 383, 1136, 1351, 1406
BciT130I CCWGG 2 cut(s) 200, 1230
BciVI GTATCC 1 cut(s) 1309
BcnI CCSGG 2 cut(s) 885, 1064
BcoDI GTCTC 2 cut(s) 749, 1469
BfaI CTAG 4 cut(s) 243, 281, 960, 1208
BfmI CTRYAG 2 cut(s) 478, 1380
BfuI GTATCC 1 cut(s) 1309
BisI GCNGC 7 cut(s) 272, 294, 499, 912, 1045, 1205, 1431
BlsI GCNGC 7 cut(s) 273, 295, 500, 913, 1046, 1206, 1432
BmcAI AGTACT 1 cut(s) 254
Bme1390I CCNGG 4 cut(s) 200, 885, 1064, 1230
Bme18I GGWCC 3 cut(s) 202, 370, 878
BmeT110I CYCGRG 3 cut(s) 570, 1120, 1472
BmgT120I GGNCC 5 cut(s) 202, 370, 573, 640, 878
BmiI GGNNCC 3 cut(s) 204, 372, 771
BmrFI CCNGG 4 cut(s) 200, 885, 1064, 1230
BmsI GCATC 5 cut(s) 42, 280, 580, 1411, 1417
Bpu10I CCTNAGC 3 cut(s) 188, 297, 1288
Bpu14I TTCGAA 2 cut(s) 343, 417
BpuEI CTTGAG 2 cut(s) 657, 1442
BpuMI CCSGG 2 cut(s) 885, 1064
BsaI GGTCTC 1 cut(s) 1469
BsaJI CCNNGG 4 cut(s) 576, 636, 915, 1303
Bsc4I CCNNNNNNNGG 8 cut(s) 98, 565, 662, 710, 890, 1275, 1384, 1557
Bse1I ACTGG 2 cut(s) 664, 895
Bse3DI GCAATG 1 cut(s) 771
BseBI CCWGG 2 cut(s) 200, 1230
BseDI CCNNGG 4 cut(s) 576, 636, 915, 1303
BseGI GGATG 2 cut(s) 552, 1246
BseLI CCNNNNNNNGG 8 cut(s) 98, 565, 662, 710, 890, 1275, 1384, 1557
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 2 cut(s) 202, 288
BseNI ACTGG 2 cut(s) 664, 895
BseRI GAGGAG 3 cut(s) 218, 835, 1409
BseXI GCAGC 4 cut(s) 280, 283, 1056, 1417
BseYI CCCAGC 1 cut(s) 742
Bsh1236I CGCG 1 cut(s) 728
BshFI GGCC 6 cut(s) 83, 575, 642, 914, 992, 1228
BsiHKAI GWGCWC 1 cut(s) 741
BsiHKCI CYCGRG 3 cut(s) 570, 1120, 1472
BsiSI CCGG 3 cut(s) 773, 885, 1063
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 8 cut(s) 98, 565, 662, 710, 890, 1275, 1384, 1557
BsmAI GTCTC 2 cut(s) 749, 1469
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 1308
BsnI GGCC 6 cut(s) 83, 575, 642, 914, 992, 1228
Bso31I GGTCTC 1 cut(s) 1469
BsoBI CYCGRG 3 cut(s) 570, 1120, 1472
Bsp119I TTCGAA 2 cut(s) 343, 417
Bsp1286I GDGCHC 1 cut(s) 741
Bsp1407I TGTACA 1 cut(s) 1243
Bsp143I GATC 4 cut(s) 247, 318, 444, 976
Bsp19I CCATGG 1 cut(s) 915
BspACI CCGC 5 cut(s) 499, 728, 911, 1161, 1204
BspANI GGCC 6 cut(s) 83, 575, 642, 914, 992, 1228
BspCNI CTCAG 2 cut(s) 201, 289
BspFNI CGCG 1 cut(s) 728
BspLI GGNNCC 3 cut(s) 204, 372, 771
BspMAI CTGCAG 1 cut(s) 1384
BspPI GGATC 1 cut(s) 255
BspT104I TTCGAA 2 cut(s) 343, 417
BspTNI GGTCTC 1 cut(s) 1469
BsrBI CCGCTC 1 cut(s) 1204
BsrDI GCAATG 1 cut(s) 771
BsrGI TGTACA 1 cut(s) 1243
BsrI ACTGG 2 cut(s) 664, 895
BssECI CCNNGG 4 cut(s) 576, 636, 915, 1303
BssMI GATC 4 cut(s) 247, 318, 444, 976
BssT1I CCWWGG 1 cut(s) 915
Bst2UI CCWGG 2 cut(s) 200, 1230
Bst4CI ACNGT 3 cut(s) 467, 473, 482
Bst6I CTCTTC 3 cut(s) 776, 812, 851
BstAUI TGTACA 1 cut(s) 1243
BstBI TTCGAA 2 cut(s) 343, 417
BstDEI CTNAG 3 cut(s) 188, 297, 1288
BstDSI CCRYGG 2 cut(s) 636, 915
BstENI CCTNNNNNAGG 1 cut(s) 708
BstF5I GGATG 2 cut(s) 552, 1246
BstFNI CGCG 1 cut(s) 728
BstHHI GCGC 2 cut(s) 276, 728
BstKTI GATC 4 cut(s) 250, 321, 447, 979
BstMAI GTCTC 2 cut(s) 749, 1469
BstMBI GATC 4 cut(s) 247, 318, 444, 976
BstMWI GCNNNNNNNGC 5 cut(s) 95, 917, 969, 1329, 1430
BstNI CCWGG 2 cut(s) 200, 1230
BstNSI RCATGY 2 cut(s) 109, 1258
BstSCI CCNGG 4 cut(s) 198, 883, 1062, 1228
BstSFI CTRYAG 2 cut(s) 478, 1380
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 4 cut(s) 280, 283, 1056, 1417
BsuI GTATCC 1 cut(s) 1309
BsuRI GGCC 6 cut(s) 83, 575, 642, 914, 992, 1228
BtgI CCRYGG 2 cut(s) 636, 915
BtgZI GCGATG 1 cut(s) 1313
BtsCI GGATG 2 cut(s) 552, 1246
BtsIMutI CAGTG 1 cut(s) 888
CfoI GCGC 2 cut(s) 276, 728
Cfr13I GGNCC 5 cut(s) 202, 370, 573, 640, 878
CseI GACGC 2 cut(s) 675, 1527
Csp6I GTAC 3 cut(s) 253, 550, 1244
CviAII CATG 5 cut(s) 106, 124, 560, 916, 1255
CviQI GTAC 3 cut(s) 253, 550, 1244
DdeI CTNAG 3 cut(s) 188, 297, 1288
DpnI GATC 4 cut(s) 249, 320, 446, 978
DpnII GATC 4 cut(s) 247, 318, 444, 976
DraI TTTAAA 2 cut(s) 154, 652
EaeI YGGCCR 1 cut(s) 912
Eam1104I CTCTTC 3 cut(s) 776, 812, 851
EarI CTCTTC 3 cut(s) 776, 812, 851
Eco130I CCWWGG 1 cut(s) 915
Eco147I AGGCCT 2 cut(s) 992, 1228
Eco31I GGTCTC 1 cut(s) 1469
Eco47I GGWCC 3 cut(s) 202, 370, 878
Eco57I CTGAAG 3 cut(s) 474, 693, 800
Eco88I CYCGRG 3 cut(s) 570, 1120, 1472
EcoNI CCTNNNNNAGG 1 cut(s) 708
EcoO109I RGGNCCY 1 cut(s) 370
EcoRII CCWGG 2 cut(s) 198, 1228
EcoT14I CCWWGG 1 cut(s) 915
ErhI CCWWGG 1 cut(s) 915
FaeI CATG 5 cut(s) 109, 127, 563, 919, 1258
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 1 cut(s) 356
FatI CATG 5 cut(s) 105, 123, 559, 915, 1254
FblI GTMKAC 1 cut(s) 1001
Fnu4HI GCNGC 7 cut(s) 272, 294, 499, 912, 1045, 1205, 1431
FokI GGATG 2 cut(s) 539, 1253
Fsp4HI GCNGC 7 cut(s) 272, 294, 499, 912, 1045, 1205, 1431
FspBI CTAG 4 cut(s) 243, 281, 960, 1208
GlaI GCGC 2 cut(s) 275, 727
GluI GCNGC 7 cut(s) 272, 294, 499, 912, 1045, 1205, 1431
GsaI CCCAGC 1 cut(s) 746
HaeIII GGCC 6 cut(s) 83, 575, 642, 914, 992, 1228
HapII CCGG 3 cut(s) 773, 885, 1063
HgaI GACGC 2 cut(s) 675, 1527
HhaI GCGC 2 cut(s) 276, 728
Hin1II CATG 5 cut(s) 109, 127, 563, 919, 1258
Hin6I GCGC 2 cut(s) 274, 726
HinP1I GCGC 2 cut(s) 274, 726
HindIII AAGCTT 2 cut(s) 608, 901
HinfI GANTC 5 cut(s) 601, 1009, 1052, 1067, 1103
HpaII CCGG 3 cut(s) 773, 885, 1063
HphI GGTGA 5 cut(s) 1175, 1177, 1366, 1421, 1427
Hpy166II GTNNAC 7 cut(s) 665, 881, 1002, 1060, 1113, 1185, 1246
Hpy188I TCNGA 3 cut(s) 259, 1543, 1552
Hpy188III TCNNGA 6 cut(s) 754, 814, 1282, 1313, 1436, 1474
Hpy8I GTNNAC 7 cut(s) 665, 881, 1002, 1060, 1113, 1185, 1246
HpyAV CCTTC 3 cut(s) 714, 982, 1433
HpyCH4III ACNGT 3 cut(s) 467, 473, 482
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 6 cut(s) 593, 701, 1044, 1217, 1266, 1382
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 917, 969, 1329, 1430
HpyF3I CTNAG 3 cut(s) 188, 297, 1288
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 5 cut(s) 109, 127, 563, 919, 1258
HspAI GCGC 2 cut(s) 274, 726
Kzo9I GATC 4 cut(s) 247, 318, 444, 976
LmnI GCTCC 4 cut(s) 769, 775, 1201, 1396
Lsp1109I GCAGC 4 cut(s) 280, 283, 1056, 1417
LweI GCATC 5 cut(s) 42, 280, 580, 1411, 1417
MaeI CTAG 4 cut(s) 243, 281, 960, 1208
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 5 cut(s) 101, 385, 467, 473, 617
MalI GATC 4 cut(s) 249, 320, 446, 978
MbiI CCGCTC 1 cut(s) 1204
MboI GATC 4 cut(s) 247, 318, 444, 976
MboII GAAGA 9 cut(s) 439, 467, 699, 793, 829, 868, 1090, 1505, 1508
MfeI CAATTG 3 cut(s) 715, 980, 1450
MhlI GDGCHC 1 cut(s) 741
MlyI GAGTC 1 cut(s) 595
MseI TTAA 3 cut(s) 153, 426, 651
MslI CAYNNNNRTG 2 cut(s) 110, 1253
MspI CCGG 3 cut(s) 773, 885, 1063
MspR9I CCNGG 4 cut(s) 200, 885, 1064, 1230
MunI CAATTG 3 cut(s) 715, 980, 1450
Mva1269I GAATGC 1 cut(s) 1308
MvaI CCWGG 2 cut(s) 200, 1230
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 5 cut(s) 95, 917, 969, 1329, 1430
NciI CCSGG 2 cut(s) 885, 1064
NcoI CCATGG 1 cut(s) 915
NdeII GATC 4 cut(s) 247, 318, 444, 976
NlaIII CATG 5 cut(s) 109, 127, 563, 919, 1258
NlaIV GGNNCC 3 cut(s) 204, 372, 771
NmeAIII GCCGAG 3 cut(s) 59, 601, 1284
NmuCI GTSAC 2 cut(s) 467, 473
NspI RCATGY 2 cut(s) 109, 1258
NspV TTCGAA 2 cut(s) 343, 417
PaeR7I CTCGAG 1 cut(s) 1472
PceI AGGCCT 2 cut(s) 992, 1228
PciI ACATGT 2 cut(s) 105, 1254
PctI GAATGC 1 cut(s) 1308
PfeI GAWTC 4 cut(s) 1009, 1052, 1067, 1103
PflMI CCANNNNNTGG 1 cut(s) 565
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 7 cut(s) 273, 295, 500, 913, 1046, 1206, 1432
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PpuMI RGGWCCY 1 cut(s) 370
PscI ACATGT 2 cut(s) 105, 1254
PsiI TTATAA 1 cut(s) 542
Psp1406I AACGTT 1 cut(s) 631
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 2 cut(s) 198, 1228
PspFI CCCAGC 1 cut(s) 742
PspGI CCWGG 2 cut(s) 198, 1228
PspN4I GGNNCC 3 cut(s) 204, 372, 771
PspPI GGNCC 5 cut(s) 202, 370, 573, 640, 878
PspPPI RGGWCCY 1 cut(s) 370
PstI CTGCAG 1 cut(s) 1384
RsaI GTAC 3 cut(s) 254, 551, 1245
RsaNI GTAC 3 cut(s) 253, 550, 1244
RseI CAYNNNNRTG 2 cut(s) 110, 1253
SaqAI TTAA 3 cut(s) 153, 426, 651
SatI GCNGC 7 cut(s) 272, 294, 499, 912, 1045, 1205, 1431
Sau3AI GATC 4 cut(s) 247, 318, 444, 976
Sau96I GGNCC 5 cut(s) 202, 370, 573, 640, 878
ScaI AGTACT 1 cut(s) 254
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 4 cut(s) 200, 885, 1064, 1230
SduI GDGCHC 1 cut(s) 741
SfaNI GCATC 5 cut(s) 42, 280, 580, 1411, 1417
SfcI CTRYAG 2 cut(s) 478, 1380
Sfr274I CTCGAG 1 cut(s) 1472
SfuI TTCGAA 2 cut(s) 343, 417
SinI GGWCC 3 cut(s) 202, 370, 878
SlaI CTCGAG 1 cut(s) 1472
SmiMI CAYNNNNRTG 2 cut(s) 110, 1253
SmlI CTYRAG 3 cut(s) 672, 1457, 1472
SmoI CTYRAG 3 cut(s) 672, 1457, 1472
SseBI AGGCCT 2 cut(s) 992, 1228
SsiI CCGC 5 cut(s) 499, 728, 911, 1161, 1204
SspI AATATT 1 cut(s) 14
SspMI CTAG 4 cut(s) 243, 281, 960, 1208
StuI AGGCCT 2 cut(s) 992, 1228
StyD4I CCNGG 4 cut(s) 198, 883, 1062, 1228
StyI CCWWGG 1 cut(s) 915
TaaI ACNGT 3 cut(s) 467, 473, 482
TaiI ACGT 1 cut(s) 634
TaqI TCGA 7 cut(s) 234, 343, 417, 753, 1234, 1295, 1473
TatI WGTACW 2 cut(s) 252, 1243
TauI GCSGC 3 cut(s) 501, 914, 1207
TfiI GAWTC 4 cut(s) 1009, 1052, 1067, 1103
Tru1I TTAA 3 cut(s) 153, 426, 651
Tru9I TTAA 3 cut(s) 153, 426, 651
TscAI CASTG 1 cut(s) 895
TseFI GTSAC 2 cut(s) 467, 473
TseI GCWGC 4 cut(s) 271, 293, 1044, 1430
Tsp45I GTSAC 2 cut(s) 467, 473
TspDTI ATGAA 1 cut(s) 140
TspGWI ACGGA 1 cut(s) 920
TspRI CASTG 1 cut(s) 895
Van91I CCANNNNNTGG 1 cut(s) 565
VpaK11BI GGWCC 3 cut(s) 202, 370, 878
XagI CCTNNNNNAGG 1 cut(s) 708
XapI RAATTY 2 cut(s) 264, 1545
XceI RCATGY 2 cut(s) 109, 1258
XhoI CTCGAG 1 cut(s) 1472
XmiI GTMKAC 1 cut(s) 1001
XspI CTAG 4 cut(s) 243, 281, 960, 1208
ZrmI AGTACT 1 cut(s) 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.