Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003681

Physical Location & Seq

Genomic Coordinates Forward (+)

6717169 .. 6718731

Gene Structure 1563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0083500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGATCAAAAGGGTTTGTCAGAAGATTTGAGAAACGACGTTGAGTTAGTGAAATCATCCTCTGAAAAGCAACTTTTGAGACCATCAGCTCGACATTATTCAGTATTTAAAGGGCAAGCAACAGATGCGGATCCTGAAAAAGGAAGATATACGCTTATTAAAGATGCAGAGGACTTTCCATCAGGAATATATGAGAAACAGCTTCCATGCTTTGGCTGTGGGATAGGATGGTTTTCATTTCTTTTAGGCTTTGTCTTCCCATTGATGTGGTACTATGCCACAGTTCTCTACTTTGGAAACTACTATCGCAAAGATCCTAGGGAGCGAGCTGGACTGGCAGCCTCTGCAATTTGTGCACTGGTTTGTTCTGCTGTGTTGGTGGTCATAGTACTGTTTCTGATATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

135

Amino Acids

15.25

Weight (kDa)

6.56

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12131 FvH4_1g12133 FvH4_1g12134
malus_domestica	MD15G1253100.v1.1 MD15G1253200.v1.1 MD15G1253400.v1.1 MD15G1254000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0099811 RchiOBHm_Chr2g0099831 RchiOBHm_Chr2g0099841
rosa_laevigata	RLG00000016916 RLG00000016917 RLG00000016918
rosa_multiflora	Rmu_co8276881.1_g000001 Rmu_sc0004158.1_g000001 Rmu_sc0004158.1_g000002 Rmu_sc0004158.1_g000003 Rmu_sc0004158.1_g000004 Rmu_sc0008864.1_g000006 Rmu_sc0008864.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142760
rosa_rugosa	Rorug02G0083400.1 Rorug02G0083500
rosa_samantha	Rh2BG135700 Rh2BG135900 Rh2BG136000 Rh2CG137300 Rh2CG137500 Rh2CG137600 Rh2DG137700 Rh2DG137900 Rh2DG138000
rosa_wichuraiana	Rw2G010280 Rw2G010300 Rw2G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	4 cut(s)	12, 125, 138, 308
AfaI	GTAC	2 cut(s)	272, 390
AfiI	CCNNNNNNNGG	2 cut(s)	140, 212
AluBI	AGCT	3 cut(s)	89, 202, 329
AluI	AGCT	3 cut(s)	89, 202, 329
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	73
Alw44I	GTGCAC	1 cut(s)	354
AlwI	GGATC	4 cut(s)	12, 125, 138, 308
AlwNI	CAGNNNCTG	1 cut(s)	344
ApaLI	GTGCAC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	338
AspA2I	CCTAGG	1 cut(s)	317
AvrII	CCTAGG	1 cut(s)	317
BaeGI	GKGCMC	1 cut(s)	358
BamHI	GGATCC	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	3 cut(s)	91, 187, 222
BcoDI	GTCTC	1 cut(s)	73
BfaI	CTAG	2 cut(s)	318, 406
BisI	GCNGC	1 cut(s)	339
BlnI	CCTAGG	1 cut(s)	317
BlsI	GCNGC	1 cut(s)	340
BmcAI	AGTACT	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	132
BmsI	GCATC	2 cut(s)	115, 154
BpiI	GAAGAC	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 212
Bse1I	ACTGG	2 cut(s)	339, 363
Bse8I	GATNNNNATC	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	2 cut(s)	56, 233
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	2 cut(s)	140, 212
BseNI	ACTGG	2 cut(s)	339, 363
BseSI	GKGCMC	1 cut(s)	358
BseXI	GCAGC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	140, 212
BsmAI	GTCTC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	4, 130, 313
BspACI	CCGC	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	4 cut(s)	12, 125, 138, 308
BspTNI	GGTCTC	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	339, 363
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	3 cut(s)	4, 130, 313
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	283, 393
BstAPI	GCANNNNNTGC	3 cut(s)	125, 344, 353
BstC8I	GCNNGC	2 cut(s)	117, 327
BstENI	CCTNNNNNAGG	1 cut(s)	138
BstF5I	GGATG	2 cut(s)	56, 233
BstKTI	GATC	3 cut(s)	7, 133, 316
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	3 cut(s)	4, 130, 313
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 335, 344, 353
BstSLI	GKGCMC	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	247
BstX2I	RGATCY	2 cut(s)	130, 313
BstXI	CCANNNNNNTGG	1 cut(s)	267
BstYI	RGATCY	2 cut(s)	130, 313
BtsCI	GGATG	2 cut(s)	56, 233
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	117, 327
CaiI	CAGNNNCTG	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	271, 389
CviAII	CATG	1 cut(s)	207
CviJI	RGCY	6 cut(s)	89, 202, 216, 249, 329, 341
CviKI_1	RGCY	6 cut(s)	89, 202, 216, 249, 329, 341
CviQI	GTAC	2 cut(s)	271, 389
DpnI	GATC	3 cut(s)	6, 132, 315
DpnII	GATC	3 cut(s)	4, 130, 313
DraI	TTTAAA	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	73
EcoNI	CCTNNNNNAGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	1 cut(s)	210
FaiI	YATR	6 cut(s)	150, 190, 192, 208, 276, 386
FatI	CATG	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	2 cut(s)	43, 240
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	2 cut(s)	318, 406
GluI	GCNGC	1 cut(s)	339
Hin1II	CATG	1 cut(s)	210
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	22, 64, 399
Hpy188III	TCNNGA	2 cut(s)	134, 183
Hpy8I	GTNNAC	1 cut(s)	356
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4III	ACNGT	2 cut(s)	283, 393
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	3 cut(s)	167, 347, 356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 335, 344, 353
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	4, 130, 313
LmnI	GCTCC	1 cut(s)	322
LpnPI	CCDG	5 cut(s)	147, 168, 315, 320, 344
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	2 cut(s)	115, 154
MaeI	CTAG	2 cut(s)	318, 406
MaeII	ACGT	1 cut(s)	39
MalI	GATC	3 cut(s)	6, 132, 315
MboI	GATC	3 cut(s)	4, 130, 313
MboII	GAAGA	3 cut(s)	35, 156, 247
MflI	RGATCY	2 cut(s)	130, 313
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	1 cut(s)	348
MnlI	CCTC	3 cut(s)	70, 163, 352
MseI	TTAA	2 cut(s)	108, 159
MslI	CAYNNNNRTG	1 cut(s)	265
MwoI	GCNNNNNNNGC	4 cut(s)	125, 335, 344, 353
NdeII	GATC	3 cut(s)	4, 130, 313
NlaIII	CATG	1 cut(s)	210
NlaIV	GGNNCC	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	344
PsuI	RGATCY	2 cut(s)	130, 313
RsaI	GTAC	2 cut(s)	272, 390
RsaNI	GTAC	2 cut(s)	271, 389
RseI	CAYNNNNRTG	1 cut(s)	265
SaqAI	TTAA	2 cut(s)	108, 159
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	3 cut(s)	4, 130, 313
ScaI	AGTACT	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	4 cut(s)	42, 91, 204, 331
SfaNI	GCATC	2 cut(s)	115, 154
SmiMI	CAYNNNNRTG	1 cut(s)	265
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	1 cut(s)	128
SspMI	CTAG	2 cut(s)	318, 406
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	283, 393
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	348
TatI	WGTACW	1 cut(s)	388
Tru1I	TTAA	2 cut(s)	108, 159
Tru9I	TTAA	2 cut(s)	108, 159
TscAI	CASTG	1 cut(s)	363
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	363
Van91I	CCANNNNNTGG	1 cut(s)	212
VneI	GTGCAC	1 cut(s)	354
XagI	CCTNNNNNAGG	1 cut(s)	138
XmaJI	CCTAGG	1 cut(s)	317
XspI	CTAG	2 cut(s)	318, 406
ZrmI	AGTACT	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.