Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004158.1

Orthogroup ID

OG0003681

Physical Location & Seq

Genomic Coordinates Reverse (-)

2796 .. 4370

Gene Structure 1575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004158.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ctggaccctctagccaatcacataactttcctcatcgacaactctagggatcactactcggacgaaatttcgcagcgcaacctagtctatgatgctgctgaggtctatcttgccaccaagatcaacccgaaaacccaaatctttcgaatcagcaaagcaccgaaacaaaaggtccccatcattgttgttaccaccacccaagaaatcgccgacactttcgaaaacattaaagtaaagtggcgcatgatcttccctgaagaaaaagaccgtcacagtcactacagtaggctcaataagagccgctttgagctaacattccacaggaaacacaaagacaaagttataaactcgtacatcgcctatgtattggctcgggccgaggctatcaaagatgcagaaaagactctaaagctttatagttacaatagtaaacgttcctcggcccattactttaaaccttctggtggacgctctcaaggtagtgatgacgatgatgactttgcaccttcttcaggcaattggagttgcgaggataatgagcacccagctactttcgagacaatagcaatggagccggagctaaagagaattatcatagatgatttggacaagttcgtgaagaggagggagttctacaagagagttggcaaggcttggaagagaggctacttgttgtttggtccccccggaactggaaaatccagcttggtagcggccatggctaatcatctccgttttgatatttatgatttggaactcactagcatttccagcaccgatcaattgaggaaggccttgatgtctactaccaatcgttctattgtggtgtttgaggatattgattgcagcaaggaatccgtaaaccgggaatcagcagagagcaagaactttatggtttccaaagccgaatccaaggtcataattacactctcgggtctgctgaatgtcgttgatggtctgtggtcaagttgcggtgatgagagaattattgtgttcaccggccaccaaccacaaggagcggctagaccctgcattgttgaggacaccagcgaacatcgcctgtgtggagaaattgaagcattgatagagaacacaaacatcacccctgcagaggtttgtgaggagcttatgaggggtgatggtgatgatgctgatgctgctcttgaaggacttgtcaattgcctcaagtgtaagaggctcgagaccaaaaaaatagaggaagaagaaatagggaaagcaaagaggcagaaaacagataacaatgcgtctgaaatttccgagaattggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

429

Amino Acids

48.7

Weight (kDa)

5.97

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12131 FvH4_1g12133 FvH4_1g12134
malus_domestica	MD15G1253100.v1.1 MD15G1253200.v1.1 MD15G1253400.v1.1 MD15G1254000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0099811 RchiOBHm_Chr2g0099831 RchiOBHm_Chr2g0099841
rosa_laevigata	RLG00000016916 RLG00000016917 RLG00000016918
rosa_multiflora	Rmu_co8276881.1_g000001 Rmu_sc0004158.1_g000001 Rmu_sc0004158.1_g000002 Rmu_sc0004158.1_g000003 Rmu_sc0004158.1_g000004 Rmu_sc0008864.1_g000006 Rmu_sc0008864.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142760
rosa_rugosa	Rorug02G0083400.1 Rorug02G0083500
rosa_samantha	Rh2BG135700 Rh2BG135900 Rh2BG136000 Rh2CG137300 Rh2CG137500 Rh2CG137600 Rh2DG137700 Rh2DG137900 Rh2DG138000
rosa_wichuraiana	Rw2G010280 Rw2G010300 Rw2G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	344
AccBSI	CCGCTC	1 cut(s)	1019
AccI	GTMKAC	1 cut(s)	803
AciI	CCGC	4 cut(s)	301, 713, 972, 1019
AclI	AACGTT	1 cut(s)	433
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	2 cut(s)	714, 1000
AcsI	RAATTY	2 cut(s)	66, 1272
AcuI	CTGAAG	2 cut(s)	276, 495
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	6 cut(s)	464, 512, 692, 864, 1111, 1284
AgsI	TTSAA	2 cut(s)	1076, 1166
AluBI	AGCT	6 cut(s)	310, 412, 548, 580, 705, 1126
AluI	AGCT	6 cut(s)	310, 412, 548, 580, 705, 1126
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	2 cut(s)	551, 1196
AlwI	GGATC	1 cut(s)	57
Ama87I	CYCGRG	3 cut(s)	372, 931, 1199
AoxI	GGCC	5 cut(s)	375, 441, 714, 792, 1000
ApeKI	GCWGC	4 cut(s)	73, 95, 846, 1157
ApoI	RAATTY	2 cut(s)	66, 1272
ArsI	GACNNNNNNTTYG	2 cut(s)	900, 932
AspLEI	GCGC	2 cut(s)	78, 243
AspS9I	GGNCC	5 cut(s)	4, 172, 375, 442, 680
AsuC2I	CCSGG	2 cut(s)	687, 866
AsuHPI	GGTGA	5 cut(s)	986, 988, 1093, 1148, 1154
AsuII	TTCGAA	2 cut(s)	145, 219
AvaI	CYCGRG	3 cut(s)	372, 931, 1199
AvaII	GGWCC	3 cut(s)	4, 172, 680
BarI	GAAGNNNNNNTAC	2 cut(s)	650, 682
Bbv12I	GWGCWC	1 cut(s)	543
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	4 cut(s)	82, 85, 858, 1144
BccI	CCATC	3 cut(s)	185, 947, 1133
BcnI	CCSGG	2 cut(s)	687, 866
BcoDI	GTCTC	2 cut(s)	551, 1196
BfaI	CTAG	5 cut(s)	11, 45, 83, 762, 1023
BfmI	CTRYAG	2 cut(s)	280, 1107
BisI	GCNGC	7 cut(s)	74, 96, 301, 714, 847, 1020, 1158
BlsI	GCNGC	7 cut(s)	75, 97, 302, 715, 848, 1021, 1159
Bme1390I	CCNGG	2 cut(s)	687, 866
Bme18I	GGWCC	3 cut(s)	4, 172, 680
BmeT110I	CYCGRG	3 cut(s)	372, 931, 1199
BmgT120I	GGNCC	5 cut(s)	4, 172, 375, 442, 680
BmiI	GGNNCC	4 cut(s)	6, 174, 573, 682
BmrFI	CCNGG	2 cut(s)	687, 866
BmsI	GCATC	4 cut(s)	82, 382, 1138, 1144
Bpu10I	CCTNAGC	1 cut(s)	99
Bpu14I	TTCGAA	2 cut(s)	145, 219
BpuEI	CTTGAG	2 cut(s)	459, 1169
BpuMI	CCSGG	2 cut(s)	687, 866
BsaI	GGTCTC	1 cut(s)	1196
BsaJI	CCNNGG	5 cut(s)	378, 438, 685, 717, 912
Bsc4I	CCNNNNNNNGG	6 cut(s)	464, 512, 692, 864, 1111, 1284
Bse118I	RCCGGY	1 cut(s)	998
Bse1I	ACTGG	1 cut(s)	697
Bse3DI	GCAATG	1 cut(s)	573
BseDI	CCNNGG	5 cut(s)	378, 438, 685, 717, 912
BseLI	CCNNNNNNNGG	6 cut(s)	464, 512, 692, 864, 1111, 1284
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	697
BseRI	GAGGAG	2 cut(s)	637, 1136
BseXI	GCAGC	4 cut(s)	82, 85, 858, 1144
BseYI	CCCAGC	1 cut(s)	544
BshFI	GGCC	5 cut(s)	377, 443, 716, 794, 1002
BsiHKAI	GWGCWC	1 cut(s)	543
BsiHKCI	CYCGRG	3 cut(s)	372, 931, 1199
BsiSI	CCGG	4 cut(s)	575, 687, 865, 999
BslFI	GGGAC	2 cut(s)	158, 666
BslI	CCNNNNNNNGG	6 cut(s)	464, 512, 692, 864, 1111, 1284
BsmAI	GTCTC	2 cut(s)	551, 1196
BsmFI	GGGAC	2 cut(s)	158, 666
BsnI	GGCC	5 cut(s)	377, 443, 716, 794, 1002
Bso31I	GGTCTC	1 cut(s)	1196
BsoBI	CYCGRG	3 cut(s)	372, 931, 1199
Bsp119I	TTCGAA	2 cut(s)	145, 219
Bsp1286I	GDGCHC	1 cut(s)	543
Bsp143I	GATC	4 cut(s)	49, 120, 246, 778
Bsp19I	CCATGG	1 cut(s)	717
BspACI	CCGC	4 cut(s)	301, 713, 972, 1019
BspANI	GGCC	5 cut(s)	377, 443, 716, 794, 1002
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	4 cut(s)	6, 174, 573, 682
BspMAI	CTGCAG	1 cut(s)	1111
BspPI	GGATC	1 cut(s)	57
BspT104I	TTCGAA	2 cut(s)	145, 219
BspTNI	GGTCTC	1 cut(s)	1196
BsrBI	CCGCTC	1 cut(s)	1019
BsrDI	GCAATG	1 cut(s)	573
BsrFI	RCCGGY	1 cut(s)	998
BsrI	ACTGG	1 cut(s)	697
BssAI	RCCGGY	1 cut(s)	998
BssECI	CCNNGG	5 cut(s)	378, 438, 685, 717, 912
BssMI	GATC	4 cut(s)	49, 120, 246, 778
BssT1I	CCWWGG	2 cut(s)	717, 912
Bst4CI	ACNGT	3 cut(s)	269, 275, 284
Bst6I	CTCTTC	2 cut(s)	614, 653
BstBI	TTCGAA	2 cut(s)	145, 219
BstDEI	CTNAG	1 cut(s)	99
BstDSI	CCRYGG	1 cut(s)	717
BstENI	CCTNNNNNAGG	1 cut(s)	510
BstHHI	GCGC	2 cut(s)	78, 243
BstKTI	GATC	4 cut(s)	52, 123, 249, 781
BstMAI	GTCTC	2 cut(s)	551, 1196
BstMBI	GATC	4 cut(s)	49, 120, 246, 778
BstMWI	GCNNNNNNNGC	4 cut(s)	719, 771, 1056, 1157
BstSCI	CCNGG	2 cut(s)	685, 864
BstSFI	CTRYAG	2 cut(s)	280, 1107
BstV1I	GCAGC	4 cut(s)	82, 85, 858, 1144
BsuRI	GGCC	5 cut(s)	377, 443, 716, 794, 1002
BtgI	CCRYGG	1 cut(s)	717
BtgZI	GCGATG	2 cut(s)	340, 1040
CfoI	GCGC	2 cut(s)	78, 243
Cfr10I	RCCGGY	1 cut(s)	998
Cfr13I	GGNCC	5 cut(s)	4, 172, 375, 442, 680
CseI	GACGC	2 cut(s)	477, 1254
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	244, 718
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	4 cut(s)	51, 122, 248, 780
DpnII	GATC	4 cut(s)	49, 120, 246, 778
DraI	TTTAAA	1 cut(s)	454
EaeI	YGGCCR	2 cut(s)	714, 1000
Eam1104I	CTCTTC	2 cut(s)	614, 653
EarI	CTCTTC	2 cut(s)	614, 653
Eco130I	CCWWGG	2 cut(s)	717, 912
Eco147I	AGGCCT	1 cut(s)	794
Eco31I	GGTCTC	1 cut(s)	1196
Eco47I	GGWCC	3 cut(s)	4, 172, 680
Eco57I	CTGAAG	2 cut(s)	276, 495
Eco88I	CYCGRG	3 cut(s)	372, 931, 1199
EcoNI	CCTNNNNNAGG	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	717, 912
ErhI	CCWWGG	2 cut(s)	717, 912
FaeI	CATG	2 cut(s)	247, 721
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	2 cut(s)	158, 666
FatI	CATG	2 cut(s)	243, 717
FblI	GTMKAC	1 cut(s)	803
Fnu4HI	GCNGC	7 cut(s)	74, 96, 301, 714, 847, 1020, 1158
Fsp4HI	GCNGC	7 cut(s)	74, 96, 301, 714, 847, 1020, 1158
FspBI	CTAG	5 cut(s)	11, 45, 83, 762, 1023
GlaI	GCGC	2 cut(s)	77, 242
GluI	GCNGC	7 cut(s)	74, 96, 301, 714, 847, 1020, 1158
GsaI	CCCAGC	1 cut(s)	548
HaeIII	GGCC	5 cut(s)	377, 443, 716, 794, 1002
HapII	CCGG	4 cut(s)	575, 687, 865, 999
HgaI	GACGC	2 cut(s)	477, 1254
HhaI	GCGC	2 cut(s)	78, 243
Hin1II	CATG	2 cut(s)	247, 721
Hin6I	GCGC	2 cut(s)	76, 241
HinP1I	GCGC	2 cut(s)	76, 241
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	5 cut(s)	147, 403, 854, 869, 908
HpaII	CCGG	4 cut(s)	575, 687, 865, 999
HphI	GGTGA	5 cut(s)	986, 988, 1093, 1148, 1154
Hpy166II	GTNNAC	5 cut(s)	431, 467, 804, 862, 996
Hpy188I	TCNGA	3 cut(s)	61, 1270, 1279
Hpy188III	TCNNGA	4 cut(s)	556, 616, 1163, 1201
Hpy8I	GTNNAC	5 cut(s)	431, 467, 804, 862, 996
HpyAV	CCTTC	4 cut(s)	468, 516, 784, 1160
HpyCH4III	ACNGT	3 cut(s)	269, 275, 284
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	5 cut(s)	395, 503, 846, 1032, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	719, 771, 1056, 1157
HpyF3I	CTNAG	1 cut(s)	99
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	2 cut(s)	247, 721
HspAI	GCGC	2 cut(s)	76, 241
Kzo9I	GATC	4 cut(s)	49, 120, 246, 778
LmnI	GCTCC	4 cut(s)	571, 577, 1016, 1123
Lsp1109I	GCAGC	4 cut(s)	82, 85, 858, 1144
LweI	GCATC	4 cut(s)	82, 382, 1138, 1144
MaeI	CTAG	5 cut(s)	11, 45, 83, 762, 1023
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	4 cut(s)	187, 269, 275, 419
MalI	GATC	4 cut(s)	51, 122, 248, 780
MbiI	CCGCTC	1 cut(s)	1019
MboI	GATC	4 cut(s)	49, 120, 246, 778
MboII	GAAGA	7 cut(s)	241, 269, 501, 631, 670, 1232, 1235
MfeI	CAATTG	3 cut(s)	517, 782, 1177
MhlI	GDGCHC	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	397
MseI	TTAA	2 cut(s)	228, 453
MspI	CCGG	4 cut(s)	575, 687, 865, 999
MspR9I	CCNGG	2 cut(s)	687, 866
MunI	CAATTG	3 cut(s)	517, 782, 1177
MwoI	GCNNNNNNNGC	4 cut(s)	719, 771, 1056, 1157
NciI	CCSGG	2 cut(s)	687, 866
NcoI	CCATGG	1 cut(s)	717
NdeII	GATC	4 cut(s)	49, 120, 246, 778
NlaIII	CATG	2 cut(s)	247, 721
NlaIV	GGNNCC	4 cut(s)	6, 174, 573, 682
NmeAIII	GCCGAG	2 cut(s)	403, 419
NmuCI	GTSAC	2 cut(s)	269, 275
NspV	TTCGAA	2 cut(s)	145, 219
PaeR7I	CTCGAG	1 cut(s)	1199
PceI	AGGCCT	1 cut(s)	794
PfeI	GAWTC	4 cut(s)	147, 854, 869, 908
PkrI	GCNGC	7 cut(s)	75, 97, 302, 715, 848, 1021, 1159
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PpuMI	RGGWCCY	1 cut(s)	172
PsiI	TTATAA	1 cut(s)	344
Psp1406I	AACGTT	1 cut(s)	433
Psp5II	RGGWCCY	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	544
PspN4I	GGNNCC	4 cut(s)	6, 174, 573, 682
PspPI	GGNCC	5 cut(s)	4, 172, 375, 442, 680
PspPPI	RGGWCCY	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	1111
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	2 cut(s)	228, 453
SatI	GCNGC	7 cut(s)	74, 96, 301, 714, 847, 1020, 1158
Sau3AI	GATC	4 cut(s)	49, 120, 246, 778
Sau96I	GGNCC	5 cut(s)	4, 172, 375, 442, 680
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	2 cut(s)	687, 866
SduI	GDGCHC	1 cut(s)	543
SfaNI	GCATC	4 cut(s)	82, 382, 1138, 1144
SfcI	CTRYAG	2 cut(s)	280, 1107
Sfr274I	CTCGAG	1 cut(s)	1199
SfuI	TTCGAA	2 cut(s)	145, 219
SinI	GGWCC	3 cut(s)	4, 172, 680
SlaI	CTCGAG	1 cut(s)	1199
SmlI	CTYRAG	3 cut(s)	474, 1184, 1199
SmoI	CTYRAG	3 cut(s)	474, 1184, 1199
SseBI	AGGCCT	1 cut(s)	794
SsiI	CCGC	4 cut(s)	301, 713, 972, 1019
SspMI	CTAG	5 cut(s)	11, 45, 83, 762, 1023
StuI	AGGCCT	1 cut(s)	794
StyD4I	CCNGG	2 cut(s)	685, 864
StyI	CCWWGG	2 cut(s)	717, 912
TaaI	ACNGT	3 cut(s)	269, 275, 284
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	5 cut(s)	36, 145, 219, 555, 1200
TauI	GCSGC	3 cut(s)	303, 716, 1022
TfiI	GAWTC	4 cut(s)	147, 854, 869, 908
Tru1I	TTAA	2 cut(s)	228, 453
Tru9I	TTAA	2 cut(s)	228, 453
TseFI	GTSAC	2 cut(s)	269, 275
TseI	GCWGC	4 cut(s)	73, 95, 846, 1157
Tsp45I	GTSAC	2 cut(s)	269, 275
TspGWI	ACGGA	2 cut(s)	722, 847
VpaK11BI	GGWCC	3 cut(s)	4, 172, 680
XagI	CCTNNNNNAGG	1 cut(s)	510
XapI	RAATTY	2 cut(s)	66, 1272
XhoI	CTCGAG	1 cut(s)	1199
XmiI	GTMKAC	1 cut(s)	803
XspI	CTAG	5 cut(s)	11, 45, 83, 762, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.