Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003681

Physical Location & Seq

Genomic Coordinates Reverse (-)

11592079 .. 11592777

Gene Structure 699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG136000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGGAATTAAGATGACTTCCCCAAATTTGCAAGATTTGATGCCCACAGCAATGTCTTCCTTTTTCTCGGCCTATGCCCCCTTCGCTGGTTACATGTTTATGCTCCAATCCTTGAACACCAATTTCATACCTTACCAGGTCAAATCATACATATACAAATACTTCAAATCAAGCATCAACTACCTCCTGGACCCTCAAGCTAATCACATAACTCTCCTCGTCGACTGTTCTAGCCATCGCAACTACTCCTCCGGAATCTCAATGGCTCAGCGCAACCAACTCTATGATGCCGCTGAGGTCTATCTCGCCACCAAGATCAGTCCGAAAACCCAAGTTTTTCGAATCACCAAAACATCTAAACAAAAGACCCCTAAACTTGCCGTTACCACCACCCAAGAAATCACCGACACTTTCCAAAACATTAAAGTAAAGTGGCGCATGATCTTCCGTTCCAATGATGACCATCACTACAGTAGTGATCAGAGTGCCCGCATTGAGTTAACATTCCCTAGGAAACACAAAGATAAGGTGTTGGACTCGTACATCCCCTATGTGTTGGCTCAGGCCGAGGCTATTAAAGATGCAGAAAAGACTCTGAAGCTTTATAGTTATGACGTTAACGTTCCATTCATTACAACCCTACTCGTGGTAGTGATGACGAGGGCTACGGACCTTCTTCGGGCAATTGGAGTTGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

232

Amino Acids

26.56

Weight (kDa)

9.45

Isoelectric Point (pI)

46.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_assoc	PF14363	43 - 147	8.3e-17	Domain associated at C-terminal with AAA

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12131 FvH4_1g12133 FvH4_1g12134
malus_domestica	MD15G1253100.v1.1 MD15G1253200.v1.1 MD15G1253400.v1.1 MD15G1254000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0099811 RchiOBHm_Chr2g0099831 RchiOBHm_Chr2g0099841
rosa_laevigata	RLG00000016916 RLG00000016917 RLG00000016918
rosa_multiflora	Rmu_co8276881.1_g000001 Rmu_sc0004158.1_g000001 Rmu_sc0004158.1_g000002 Rmu_sc0004158.1_g000003 Rmu_sc0004158.1_g000004 Rmu_sc0008864.1_g000006 Rmu_sc0008864.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142760
rosa_rugosa	Rorug02G0083400.1 Rorug02G0083500
rosa_samantha	Rh2BG135700 Rh2BG135900 Rh2BG136000 Rh2CG137300 Rh2CG137500 Rh2CG137600 Rh2DG137700 Rh2DG137900 Rh2DG138000
rosa_wichuraiana	Rw2G010280 Rw2G010300 Rw2G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	251
AciI	CCGC	2 cut(s)	291, 490
AclI	AACGTT	1 cut(s)	621
AcsI	RAATTY	1 cut(s)	25
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	1 cut(s)	542
AfiI	CCNNNNNNNGG	3 cut(s)	86, 646, 679
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	2 cut(s)	115, 166
AjnI	CCWGG	2 cut(s)	135, 186
AluBI	AGCT	2 cut(s)	200, 601
AluI	AGCT	2 cut(s)	200, 601
Aor13HI	TCCGGA	1 cut(s)	251
AoxI	GGCC	2 cut(s)	69, 564
ApoI	RAATTY	1 cut(s)	25
AspA2I	CCTAGG	1 cut(s)	509
AspLEI	GCGC	2 cut(s)	273, 438
AspS9I	GGNCC	2 cut(s)	190, 670
AsuHPI	GGTGA	2 cut(s)	337, 394
AsuII	TTCGAA	1 cut(s)	340
AvaII	GGWCC	2 cut(s)	190, 670
AvrII	CCTAGG	1 cut(s)	509
BaeGI	GKGCMC	1 cut(s)	490
BauI	CACGAG	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	48
BbvCI	CCTCAGC	1 cut(s)	294
BccI	CCATC	2 cut(s)	243, 471
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	2 cut(s)	137, 188
BclI	TGATCA	1 cut(s)	478
BfaI	CTAG	2 cut(s)	231, 510
BfmI	CTRYAG	1 cut(s)	469
BisI	GCNGC	1 cut(s)	291
BlnI	CCTAGG	1 cut(s)	509
BlpI	GCTNAGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	137, 188
Bme18I	GGWCC	2 cut(s)	190, 670
BmgT120I	GGNCC	2 cut(s)	190, 670
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	2 cut(s)	137, 188
BmsI	GCATC	4 cut(s)	30, 183, 277, 571
BpiI	GAAGAC	1 cut(s)	48
Bpu10I	CCTNAGC	2 cut(s)	294, 561
Bpu1102I	GCTNAGC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	509, 567
BsaWI	WCCGGW	1 cut(s)	251
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 646, 679
Bse3DI	GCAATG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	462
BseAI	TCCGGA	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	137, 188
BseDI	CCNNGG	2 cut(s)	509, 567
BseGI	GGATG	1 cut(s)	543
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	3 cut(s)	86, 646, 679
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	3 cut(s)	281, 285, 575
BseRI	GAGGAG	2 cut(s)	206, 238
BseSI	GKGCMC	1 cut(s)	490
BshFI	GGCC	2 cut(s)	71, 566
BsiSI	CCGG	1 cut(s)	252
BslI	CCNNNNNNNGG	3 cut(s)	86, 646, 679
BsnI	GGCC	2 cut(s)	71, 566
Bsp119I	TTCGAA	1 cut(s)	340
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp13I	TCCGGA	1 cut(s)	251
Bsp143I	GATC	3 cut(s)	315, 441, 478
Bsp1720I	GCTNAGC	1 cut(s)	267
BspACI	CCGC	2 cut(s)	291, 490
BspANI	GGCC	2 cut(s)	71, 566
BspCNI	CTCAG	3 cut(s)	280, 286, 574
BspEI	TCCGGA	1 cut(s)	251
BspLI	GGNNCC	1 cut(s)	192
BspT104I	TTCGAA	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	509, 567
BssMI	GATC	3 cut(s)	315, 441, 478
BssSI	CACGAG	1 cut(s)	644
BssT1I	CCWWGG	1 cut(s)	509
Bst2BI	CACGAG	1 cut(s)	644
Bst2UI	CCWGG	2 cut(s)	137, 188
Bst4CI	ACNGT	2 cut(s)	227, 473
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	490
BstDEI	CTNAG	3 cut(s)	267, 294, 561
BstF5I	GGATG	1 cut(s)	543
BstHHI	GCGC	2 cut(s)	273, 438
BstKTI	GATC	3 cut(s)	318, 444, 481
BstMBI	GATC	3 cut(s)	315, 441, 478
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	2 cut(s)	137, 188
BstNSI	RCATGY	1 cut(s)	97
BstSCI	CCNGG	2 cut(s)	135, 186
BstSFI	CTRYAG	1 cut(s)	469
BstSLI	GKGCMC	1 cut(s)	490
BstV2I	GAAGAC	1 cut(s)	48
BsuRI	GGCC	2 cut(s)	71, 566
BtgZI	GCGATG	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	543
Cac8I	GCNNGC	1 cut(s)	490
CfoI	GCGC	2 cut(s)	273, 438
Cfr13I	GGNCC	2 cut(s)	190, 670
CsiI	ACCWGGT	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	541
CviAII	CATG	2 cut(s)	94, 439
CviJI	RGCY	9 cut(s)	71, 200, 234, 266, 560, 566, 572, 601, 665
CviKI_1	RGCY	9 cut(s)	71, 200, 234, 266, 560, 566, 572, 601, 665
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	3 cut(s)	267, 294, 561
DpnI	GATC	3 cut(s)	317, 443, 480
DpnII	GATC	3 cut(s)	315, 441, 478
Eco130I	CCWWGG	1 cut(s)	509
Eco47I	GGWCC	2 cut(s)	190, 670
Eco57I	CTGAAG	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	135, 186
EcoT14I	CCWWGG	1 cut(s)	509
ErhI	CCWWGG	1 cut(s)	509
FaeI	CATG	2 cut(s)	97, 442
FatI	CATG	2 cut(s)	93, 438
FauI	CCCGC	1 cut(s)	497
FbaI	TGATCA	1 cut(s)	478
FblI	GTMKAC	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	2 cut(s)	231, 510
GlaI	GCGC	2 cut(s)	272, 437
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	2 cut(s)	71, 566
HapII	CCGG	1 cut(s)	252
HhaI	GCGC	2 cut(s)	273, 438
Hin1II	CATG	2 cut(s)	97, 442
Hin6I	GCGC	2 cut(s)	271, 436
HinP1I	GCGC	2 cut(s)	271, 436
HincII	GTYRAC	3 cut(s)	223, 501, 619
HindII	GTYRAC	3 cut(s)	223, 501, 619
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	4 cut(s)	255, 342, 536, 592
HpaI	GTTAAC	2 cut(s)	501, 619
HpaII	CCGG	1 cut(s)	252
HphI	GGTGA	2 cut(s)	337, 394
Hpy166II	GTNNAC	3 cut(s)	223, 501, 619
Hpy188I	TCNGA	3 cut(s)	324, 483, 597
Hpy188III	TCNNGA	1 cut(s)	252
Hpy8I	GTNNAC	3 cut(s)	223, 501, 619
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	2 cut(s)	91, 683
HpyCH4III	ACNGT	2 cut(s)	227, 473
HpyCH4IV	ACGT	2 cut(s)	615, 621
HpyCH4V	TGCA	2 cut(s)	31, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	3 cut(s)	267, 294, 561
HpySE526I	ACGT	2 cut(s)	615, 621
Hsp92II	CATG	2 cut(s)	97, 442
HspAI	GCGC	2 cut(s)	271, 436
Kpn2I	TCCGGA	1 cut(s)	251
Ksp22I	TGATCA	1 cut(s)	478
KspAI	GTTAAC	2 cut(s)	501, 619
Kzo9I	GATC	3 cut(s)	315, 441, 478
LmnI	GCTCC	1 cut(s)	108
LpnPI	CCDG	7 cut(s)	72, 122, 149, 173, 200, 265, 548
LweI	GCATC	4 cut(s)	30, 183, 277, 571
MabI	ACCWGGT	1 cut(s)	135
MaeI	CTAG	2 cut(s)	231, 510
MaeII	ACGT	2 cut(s)	615, 621
MaeIII	GTNAC	2 cut(s)	89, 382
MalI	GATC	3 cut(s)	317, 443, 480
MboI	GATC	3 cut(s)	315, 441, 478
MboII	GAAGA	3 cut(s)	48, 436, 668
MfeI	CAATTG	1 cut(s)	684
MhlI	GDGCHC	1 cut(s)	490
MluCI	AATT	4 cut(s)	6, 25, 121, 684
MlyI	GAGTC	2 cut(s)	530, 586
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	7 cut(s)	194, 204, 227, 259, 289, 562, 654
MroI	TCCGGA	1 cut(s)	251
MseI	TTAA	5 cut(s)	9, 423, 500, 576, 618
MslI	CAYNNNNRTG	2 cut(s)	50, 98
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	252
MspR9I	CCNGG	2 cut(s)	137, 188
MunI	CAATTG	1 cut(s)	684
MvaI	CCWGG	2 cut(s)	137, 188
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeII	GATC	3 cut(s)	315, 441, 478
NlaIII	CATG	2 cut(s)	97, 442
NlaIV	GGNNCC	1 cut(s)	192
NmeAIII	GCCGAG	2 cut(s)	47, 592
NspI	RCATGY	1 cut(s)	97
NspV	TTCGAA	1 cut(s)	340
PciI	ACATGT	1 cut(s)	93
PfeI	GAWTC	2 cut(s)	255, 342
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	292
PleI	GAGTC	2 cut(s)	530, 586
PpsI	GAGTC	2 cut(s)	530, 586
PscI	ACATGT	1 cut(s)	93
Psp1406I	AACGTT	1 cut(s)	621
Psp6I	CCWGG	2 cut(s)	135, 186
PspGI	CCWGG	2 cut(s)	135, 186
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	190, 670
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	2 cut(s)	50, 98
SalI	GTCGAC	1 cut(s)	221
SaqAI	TTAA	5 cut(s)	9, 423, 500, 576, 618
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	3 cut(s)	315, 441, 478
Sau96I	GGNCC	2 cut(s)	190, 670
SchI	GAGTC	2 cut(s)	530, 586
ScrFI	CCNGG	2 cut(s)	137, 188
SduI	GDGCHC	1 cut(s)	490
SexAI	ACCWGGT	1 cut(s)	135
SfaNI	GCATC	4 cut(s)	30, 183, 277, 571
SfcI	CTRYAG	1 cut(s)	469
SfuI	TTCGAA	1 cut(s)	340
SinI	GGWCC	2 cut(s)	190, 670
SmiMI	CAYNNNNRTG	2 cut(s)	50, 98
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	4 cut(s)	6, 25, 121, 684
SsiI	CCGC	2 cut(s)	291, 490
SspMI	CTAG	2 cut(s)	231, 510
StyD4I	CCNGG	2 cut(s)	135, 186
StyI	CCWWGG	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	227, 473
TaiI	ACGT	2 cut(s)	618, 624
TaqI	TCGA	2 cut(s)	222, 340
TasI	AATT	4 cut(s)	6, 25, 121, 684
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	255, 342
Tru1I	TTAA	5 cut(s)	9, 423, 500, 576, 618
Tru9I	TTAA	5 cut(s)	9, 423, 500, 576, 618
TspDTI	ATGAA	2 cut(s)	115, 619
TspGWI	ACGGA	2 cut(s)	437, 683
VpaK11BI	GGWCC	2 cut(s)	190, 670
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	97
XmaJI	CCTAGG	1 cut(s)	509
XmiI	GTMKAC	1 cut(s)	222
XspI	CTAG	2 cut(s)	231, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.