Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003681

Physical Location & Seq

Genomic Coordinates Forward (+)

21383195 .. 21383791

Gene Structure 597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1253200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAAACCAAGAAGGGAAGGAATGAGTACTCCAGGGAAAGTTCGAAGCACCAATTCTTTGAGCTGACATTTCACCAAAAACACAAAGACATAGTTATGAACGCTTTCTTGCCTTACATGCTTGCTCGGGCAAATGCCATTAAAGAAGAAGAGAAGGTTGTGAAGCTTTATTCTCGTCATTTATGTTCGTATGATGACGGCAACAACAGTACTTGGGGATTGATAAACCTAGAGCATCCTGCTACTTTTGAGACGATGGCGATGGACCCTGAGCTCAAGAAAATGATTGCAGAGGATTTGGACAGGTTTGTGAGGAGCAGGGAGTTTTATAAGAAGGTGGGGAAGGCTTGGAAAAAGGCTACTTGTTGTATGAGGGTGTTGTTGTCTACTACAAATCGTTCGATTTTGGTGATTGAGGATATCGATTGTTGCAGTGTTGATATACAAAATCGGCAACCAGAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0012505 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

156

Amino Acids

18.23

Weight (kDa)

8.55

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g12131 FvH4_1g12133 FvH4_1g12134
malus_domestica	MD15G1253100.v1.1 MD15G1253200.v1.1 MD15G1253400.v1.1 MD15G1254000.v1.1
rosa_chinensis	RchiOBHm_Chr2g0099811 RchiOBHm_Chr2g0099831 RchiOBHm_Chr2g0099841
rosa_laevigata	RLG00000016916 RLG00000016917 RLG00000016918
rosa_multiflora	Rmu_co8276881.1_g000001 Rmu_sc0004158.1_g000001 Rmu_sc0004158.1_g000002 Rmu_sc0004158.1_g000003 Rmu_sc0004158.1_g000004 Rmu_sc0008864.1_g000006 Rmu_sc0008864.1_g000007
rosa_roxburghii	Rroxscaffold_2G00142760
rosa_rugosa	Rorug02G0083400.1 Rorug02G0083500
rosa_samantha	Rh2BG135700 Rh2BG135900 Rh2BG136000 Rh2CG137300 Rh2CG137500 Rh2CG137600 Rh2DG137700 Rh2DG137900 Rh2DG138000
rosa_wichuraiana	Rw2G010280 Rw2G010300 Rw2G010310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	386
AfaI	GTAC	2 cut(s)	29, 211
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	3 cut(s)	64, 166, 274
AluI	AGCT	3 cut(s)	64, 166, 274
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	65, 421
AsuII	TTCGAA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	126
AvaII	GGWCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	276
Bbv12I	GWGCWC	1 cut(s)	276
BccI	CCATC	2 cut(s)	250, 256
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	230
BmcAI	AGTACT	2 cut(s)	29, 211
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	267
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	244
BpmI	CTGGAG	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	44
BpuEI	CTTGAG	1 cut(s)	260
Bsa29I	ATCGAT	1 cut(s)	423
BsaJI	CCNNGG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	34
BseCI	ATCGAT	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	235
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	328
BshVI	ATCGAT	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	245
BsmBI	CGTCTC	1 cut(s)	245
BsoBI	CYCGRG	1 cut(s)	126
Bsp119I	TTCGAA	1 cut(s)	44
Bsp1286I	GDGCHC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	267
BspT104I	TTCGAA	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	144
BstBI	TTCGAA	1 cut(s)	44
BstC8I	GCNNGC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	235
BstMAI	GTCTC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	423
BsuTUI	ATCGAT	1 cut(s)	423
BtgZI	GCGATG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	265
ClaI	ATCGAT	1 cut(s)	423
Csp6I	GTAC	2 cut(s)	28, 210
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	5 cut(s)	64, 166, 274, 347, 359
CviKI_1	RGCY	5 cut(s)	64, 166, 274, 347, 359
CviQI	GTAC	2 cut(s)	28, 210
DdeI	CTNAG	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	144
EarI	CTCTTC	1 cut(s)	144
Ecl136II	GAGCTC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	276
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	274
Eco88I	CYCGRG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	421
EcoT38I	GRGCYC	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	1 cut(s)	121
FaiI	YATR	8 cut(s)	92, 98, 119, 184, 192, 330, 371, 443
FatI	CATG	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	386
FokI	GGATG	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	230
GsuI	CTGGAG	1 cut(s)	16
Hin1II	CATG	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	164
HphI	GGTGA	2 cut(s)	65, 421
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	5 cut(s)	7, 12, 148, 328, 337
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	2 cut(s)	290, 432
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	121
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	6 cut(s)	19, 46, 252, 282, 289, 304
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	1 cut(s)	230
MboII	GAAGA	2 cut(s)	158, 161
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	1 cut(s)	53
MnlI	CCTC	4 cut(s)	286, 306, 366, 409
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	267
NspI	RCATGY	1 cut(s)	121
NspV	TTCGAA	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	267
PspPI	GGNCC	1 cut(s)	265
RsaI	GTAC	2 cut(s)	29, 211
RsaNI	GTAC	2 cut(s)	28, 210
RseI	CAYNNNNRTG	1 cut(s)	95
SacI	GAGCTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	141
Sau96I	GGNCC	1 cut(s)	265
ScaI	AGTACT	2 cut(s)	29, 211
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	7 cut(s)	66, 159, 168, 231, 276, 308, 339
SfaNI	GCATC	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	44
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	53
SspMI	CTAG	1 cut(s)	230
SstI	GAGCTC	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	44, 401, 423
TasI	AATT	1 cut(s)	53
TatI	WGTACW	2 cut(s)	27, 209
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	265
XceI	RCATGY	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	386
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	1 cut(s)	230
ZrmI	AGTACT	2 cut(s)	29, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.